data_4Z04
#
_model_server_result.job_id            f9N8RK4uGpMQYqAAfJBQ2g 
_model_server_result.datetime_utc      '2025-01-05 02:40:19' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4z04 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":201}' 
#
_entry.id    4Z04 
#
_exptl.entry_id    4Z04 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              65.409 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'ZINC ION' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          116.29 
_cell.angle_gamma         90 
_cell.entry_id            4Z04 
_cell.length_a            82.63 
_cell.length_b            39.5 
_cell.length_c            41.7 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4Z04 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_556 -x,y,-z+1 -1 0 0 0 1 0 0 0 -1 -18.469544 0 37.386708 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 12 A HIS 4 1_555 C ZN ZN . A ZN 201 2_556 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? 
metalc ? metalc2 A NE2 HIS 71 A HIS 63 1_555 C ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? 
metalc ? metalc3 A OE2 GLU 124 A GLU 116 1_555 C ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.993 ? 
metalc ? metalc4 B SG2 GSH . A GSH 200 1_555 C ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.237 ? 
#
_chem_comp.formula           'Zn 2' 
_chem_comp.formula_weight    65.409 
_chem_comp.id                ZN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'ZINC ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     4Z04 
_atom_sites.fract_transf_matrix[1][1]    0.012102 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.005978 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.025316 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.026747 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 GSH A 1 200 200 GSH GSH . 
C 3 ZN A 1 201 201 ZN ZN . 
D 4 MRD A 1 202 202 MRD MRD . 
E 5 MPD A 1 203 203 MPD MPD . 
F 6 HOH A 1 301 113 HOH HOH . 
F 6 HOH A 2 302 73 HOH HOH . 
F 6 HOH A 3 303 39 HOH HOH . 
F 6 HOH A 4 304 30 HOH HOH . 
F 6 HOH A 5 305 58 HOH HOH . 
F 6 HOH A 6 306 37 HOH HOH . 
F 6 HOH A 7 307 62 HOH HOH . 
F 6 HOH A 8 308 20 HOH HOH . 
F 6 HOH A 9 309 50 HOH HOH . 
F 6 HOH A 10 310 14 HOH HOH . 
F 6 HOH A 11 311 54 HOH HOH . 
F 6 HOH A 12 312 71 HOH HOH . 
F 6 HOH A 13 313 33 HOH HOH . 
F 6 HOH A 14 314 15 HOH HOH . 
F 6 HOH A 15 315 43 HOH HOH . 
F 6 HOH A 16 316 21 HOH HOH . 
F 6 HOH A 17 317 7 HOH HOH . 
F 6 HOH A 18 318 24 HOH HOH . 
F 6 HOH A 19 319 59 HOH HOH . 
F 6 HOH A 20 320 1 HOH HOH . 
F 6 HOH A 21 321 114 HOH HOH . 
F 6 HOH A 22 322 10 HOH HOH . 
F 6 HOH A 23 323 2 HOH HOH . 
F 6 HOH A 24 324 11 HOH HOH . 
F 6 HOH A 25 325 111 HOH HOH . 
F 6 HOH A 26 326 82 HOH HOH . 
F 6 HOH A 27 327 88 HOH HOH . 
F 6 HOH A 28 328 26 HOH HOH . 
F 6 HOH A 29 329 17 HOH HOH . 
F 6 HOH A 30 330 4 HOH HOH . 
F 6 HOH A 31 331 103 HOH HOH . 
F 6 HOH A 32 332 64 HOH HOH . 
F 6 HOH A 33 333 42 HOH HOH . 
F 6 HOH A 34 334 25 HOH HOH . 
F 6 HOH A 35 335 3 HOH HOH . 
F 6 HOH A 36 336 128 HOH HOH . 
F 6 HOH A 37 337 19 HOH HOH . 
F 6 HOH A 38 338 90 HOH HOH . 
F 6 HOH A 39 339 5 HOH HOH . 
F 6 HOH A 40 340 31 HOH HOH . 
F 6 HOH A 41 341 60 HOH HOH . 
F 6 HOH A 42 342 72 HOH HOH . 
F 6 HOH A 43 343 56 HOH HOH . 
F 6 HOH A 44 344 44 HOH HOH . 
F 6 HOH A 45 345 28 HOH HOH . 
F 6 HOH A 46 346 53 HOH HOH . 
F 6 HOH A 47 347 29 HOH HOH . 
F 6 HOH A 48 348 84 HOH HOH . 
F 6 HOH A 49 349 34 HOH HOH . 
F 6 HOH A 50 350 70 HOH HOH . 
F 6 HOH A 51 351 57 HOH HOH . 
F 6 HOH A 52 352 18 HOH HOH . 
F 6 HOH A 53 353 66 HOH HOH . 
F 6 HOH A 54 354 87 HOH HOH . 
F 6 HOH A 55 355 83 HOH HOH . 
F 6 HOH A 56 356 16 HOH HOH . 
F 6 HOH A 57 357 32 HOH HOH . 
F 6 HOH A 58 358 49 HOH HOH . 
F 6 HOH A 59 359 6 HOH HOH . 
F 6 HOH A 60 360 35 HOH HOH . 
F 6 HOH A 61 361 55 HOH HOH . 
F 6 HOH A 62 362 13 HOH HOH . 
F 6 HOH A 63 363 104 HOH HOH . 
F 6 HOH A 64 364 61 HOH HOH . 
F 6 HOH A 65 365 101 HOH HOH . 
F 6 HOH A 66 366 22 HOH HOH . 
F 6 HOH A 67 367 124 HOH HOH . 
F 6 HOH A 68 368 67 HOH HOH . 
F 6 HOH A 69 369 122 HOH HOH . 
F 6 HOH A 70 370 98 HOH HOH . 
F 6 HOH A 71 371 100 HOH HOH . 
F 6 HOH A 72 372 9 HOH HOH . 
F 6 HOH A 73 373 41 HOH HOH . 
F 6 HOH A 74 374 46 HOH HOH . 
F 6 HOH A 75 375 36 HOH HOH . 
F 6 HOH A 76 376 40 HOH HOH . 
F 6 HOH A 77 377 63 HOH HOH . 
F 6 HOH A 78 378 65 HOH HOH . 
F 6 HOH A 79 379 45 HOH HOH . 
F 6 HOH A 80 380 105 HOH HOH . 
F 6 HOH A 81 381 78 HOH HOH . 
F 6 HOH A 82 382 109 HOH HOH . 
F 6 HOH A 83 383 91 HOH HOH . 
F 6 HOH A 84 384 38 HOH HOH . 
F 6 HOH A 85 385 116 HOH HOH . 
F 6 HOH A 86 386 112 HOH HOH . 
F 6 HOH A 87 387 81 HOH HOH . 
F 6 HOH A 88 388 92 HOH HOH . 
F 6 HOH A 89 389 74 HOH HOH . 
F 6 HOH A 90 390 127 HOH HOH . 
F 6 HOH A 91 391 51 HOH HOH . 
F 6 HOH A 92 392 118 HOH HOH . 
F 6 HOH A 93 393 94 HOH HOH . 
F 6 HOH A 94 394 8 HOH HOH . 
F 6 HOH A 95 395 48 HOH HOH . 
F 6 HOH A 96 396 80 HOH HOH . 
F 6 HOH A 97 397 12 HOH HOH . 
F 6 HOH A 98 398 129 HOH HOH . 
F 6 HOH A 99 399 95 HOH HOH . 
F 6 HOH A 100 400 47 HOH HOH . 
F 6 HOH A 101 401 75 HOH HOH . 
F 6 HOH A 102 402 68 HOH HOH . 
F 6 HOH A 103 403 110 HOH HOH . 
F 6 HOH A 104 404 85 HOH HOH . 
F 6 HOH A 105 405 123 HOH HOH . 
F 6 HOH A 106 406 125 HOH HOH . 
F 6 HOH A 107 407 99 HOH HOH . 
F 6 HOH A 108 408 27 HOH HOH . 
F 6 HOH A 109 409 107 HOH HOH . 
F 6 HOH A 110 410 52 HOH HOH . 
F 6 HOH A 111 411 121 HOH HOH . 
F 6 HOH A 112 412 23 HOH HOH . 
F 6 HOH A 113 413 119 HOH HOH . 
F 6 HOH A 114 414 77 HOH HOH . 
F 6 HOH A 115 415 69 HOH HOH . 
F 6 HOH A 116 416 102 HOH HOH . 
F 6 HOH A 117 417 93 HOH HOH . 
F 6 HOH A 118 418 130 HOH HOH . 
F 6 HOH A 119 419 108 HOH HOH . 
F 6 HOH A 120 420 76 HOH HOH . 
F 6 HOH A 121 421 96 HOH HOH . 
F 6 HOH A 122 422 126 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           ZN 
_atom_site.label_atom_id         ZN 
_atom_site.label_comp_id         ZN 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         C 
_atom_site.label_entity_id       3 
_atom_site.Cartn_x               -20.066 
_atom_site.Cartn_y               -17.868 
_atom_site.Cartn_z               19.474 
_atom_site.occupancy             0.89 
_atom_site.B_iso_or_equiv        13.42 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          ZN 
_atom_site.auth_comp_id          ZN 
_atom_site.auth_seq_id           201 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              43 
_model_server_stats.parse_time_ms           51 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           295 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           1 
#