data_4Z17 # _model_server_result.job_id yH0czz_s-Tp7cZNj9TOtRw _model_server_result.datetime_utc '2024-12-01 03:59:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4z17 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":502}' # _entry.id 4Z17 # _exptl.entry_id 4Z17 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 168.042 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description PHOSPHOENOLPYRUVATE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4Z17 _cell.length_a 146.279 _cell.length_b 146.279 _cell.length_c 101.777 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4Z17 _symmetry.cell_setting ? _symmetry.Int_Tables_number 79 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 243 A ASP 243 1_555 C MG MG . A MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.732 ? metalc ? metalc2 A OD2 ASP 243 A ASP 243 1_555 C MG MG . A MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.781 ? metalc ? metalc3 A OD2 ASP 313 A ASP 313 1_555 C MG MG . A MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.313 ? metalc ? metalc4 D O1 PEP . A PEP 502 1_555 E MG MG . A MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.822 ? metalc ? metalc5 B OD2 ASP 243 B ASP 243 1_555 F MG MG . B MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.606 ? metalc ? metalc6 B OD2 ASP 313 B ASP 313 1_555 F MG MG . B MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.517 ? metalc ? metalc7 F MG MG . B MG 501 1_555 G O2' PEP . B PEP 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.595 ? metalc ? metalc8 G O2P PEP . B PEP 502 1_555 H MG MG . B MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.967 ? # _chem_comp.formula 'C3 H5 O6 P' _chem_comp.formula_weight 168.042 _chem_comp.id PEP _chem_comp.mon_nstd_flag . _chem_comp.name PHOSPHOENOLPYRUVATE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 PEP doub 224 n n C1 O2' PEP sing 225 n n C1 C2 PEP sing 226 n n O2' HO2 PEP sing 227 n n C2 C3 PEP doub 228 n n C2 O2 PEP sing 229 n n C3 H31 PEP sing 230 n n C3 H32 PEP sing 231 n n O2 P PEP sing 232 n n P O1P PEP doub 233 n n P O2P PEP sing 234 n n P O3P PEP sing 235 n n O2P HOP2 PEP sing 236 n n O3P HOP3 PEP sing 237 n n # _atom_sites.entry_id 4Z17 _atom_sites.fract_transf_matrix[1][1] 0.006836 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006836 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009825 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MG A 1 501 1 MG MG . D 3 PEP A 1 502 1 PEP PEP . E 2 MG A 1 503 1 MG MG . F 2 MG B 1 501 1 MG MG . G 3 PEP B 1 502 1 PEP PEP . H 2 MG B 1 503 1 MG MG . I 4 HOH A 1 601 22 HOH HOH . I 4 HOH A 2 602 14 HOH HOH . I 4 HOH A 3 603 3 HOH HOH . I 4 HOH A 4 604 1 HOH HOH . I 4 HOH A 5 605 16 HOH HOH . I 4 HOH A 6 606 25 HOH HOH . I 4 HOH A 7 607 18 HOH HOH . I 4 HOH A 8 608 29 HOH HOH . I 4 HOH A 9 609 12 HOH HOH . I 4 HOH A 10 610 20 HOH HOH . I 4 HOH A 11 611 9 HOH HOH . I 4 HOH A 12 612 10 HOH HOH . I 4 HOH A 13 613 21 HOH HOH . J 4 HOH B 1 601 15 HOH HOH . J 4 HOH B 2 602 30 HOH HOH . J 4 HOH B 3 603 19 HOH HOH . J 4 HOH B 4 604 28 HOH HOH . J 4 HOH B 5 605 26 HOH HOH . J 4 HOH B 6 606 31 HOH HOH . J 4 HOH B 7 607 2 HOH HOH . J 4 HOH B 8 608 27 HOH HOH . J 4 HOH B 9 609 4 HOH HOH . J 4 HOH B 10 610 5 HOH HOH . J 4 HOH B 11 611 8 HOH HOH . J 4 HOH B 12 612 17 HOH HOH . J 4 HOH B 13 613 13 HOH HOH . J 4 HOH B 14 614 6 HOH HOH . J 4 HOH B 15 615 24 HOH HOH . J 4 HOH B 16 616 32 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PEP . . . D 3 189.414 26.641 -10.345 1 126.26 ? C1 PEP 502 A 1 HETATM 2 O O1 PEP . . . D 3 190.222 27.439 -10.868 1 126.21 ? O1 PEP 502 A 1 HETATM 3 O O2' PEP . . . D 3 189.804 25.562 -9.856 1 126.17 ? O2' PEP 502 A 1 HETATM 4 C C2 PEP . . . D 3 187.987 26.972 -10.288 1 126.77 ? C2 PEP 502 A 1 HETATM 5 C C3 PEP . . . D 3 187.515 27.582 -9.216 1 126.26 ? C3 PEP 502 A 1 HETATM 6 O O2 PEP . . . D 3 187.081 26.607 -11.382 1 127.89 ? O2 PEP 502 A 1 HETATM 7 P P PEP . . . D 3 186.772 27.55 -12.668 1 127.52 ? P PEP 502 A 1 HETATM 8 O O1P PEP . . . D 3 187.729 27.062 -13.73 1 127.48 ? O1P PEP 502 A 1 HETATM 9 O O2P PEP . . . D 3 185.33 27.266 -13.008 1 127.16 ? O2P PEP 502 A 1 HETATM 10 O O3P PEP . . . D 3 187.015 28.964 -12.189 1 127.84 ? O3P PEP 502 A 1 # _model_server_stats.io_time_ms 42 _model_server_stats.parse_time_ms 41 _model_server_stats.create_model_time_ms 37 _model_server_stats.query_time_ms 1196 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 10 #