data_4Z19 # _model_server_result.job_id rnDzki7qFk4hx4wutdS_YA _model_server_result.datetime_utc '2024-11-05 00:30:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4z19 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 4Z19 # _exptl.entry_id 4Z19 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4Z19 _cell.length_a 91.46 _cell.length_b 119.88 _cell.length_c 49.26 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4Z19 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_556 x,-y,-z+1 1 0 0 0 -1 0 0 0 -1 0 0 49.26 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ALA 111 A ALA 111 1_555 A N SCY 112 A SCY 112 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale2 A C SCY 112 A SCY 112 1_555 A N ALA 113 A ALA 113 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 4Z19 _atom_sites.fract_transf_matrix[1][1] 0.010934 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008342 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.0203 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL A 1 401 1 GOL GOL . C 2 GOL A 1 402 2 GOL GOL . D 3 HOH A 1 501 159 HOH HOH . D 3 HOH A 2 502 9 HOH HOH . D 3 HOH A 3 503 164 HOH HOH . D 3 HOH A 4 504 209 HOH HOH . D 3 HOH A 5 505 195 HOH HOH . D 3 HOH A 6 506 131 HOH HOH . D 3 HOH A 7 507 35 HOH HOH . D 3 HOH A 8 508 130 HOH HOH . D 3 HOH A 9 509 207 HOH HOH . D 3 HOH A 10 510 123 HOH HOH . D 3 HOH A 11 511 99 HOH HOH . D 3 HOH A 12 512 126 HOH HOH . D 3 HOH A 13 513 153 HOH HOH . D 3 HOH A 14 514 23 HOH HOH . D 3 HOH A 15 515 96 HOH HOH . D 3 HOH A 16 516 115 HOH HOH . D 3 HOH A 17 517 85 HOH HOH . D 3 HOH A 18 518 108 HOH HOH . D 3 HOH A 19 519 43 HOH HOH . D 3 HOH A 20 520 190 HOH HOH . D 3 HOH A 21 521 46 HOH HOH . D 3 HOH A 22 522 105 HOH HOH . D 3 HOH A 23 523 215 HOH HOH . D 3 HOH A 24 524 227 HOH HOH . D 3 HOH A 25 525 62 HOH HOH . D 3 HOH A 26 526 233 HOH HOH . D 3 HOH A 27 527 158 HOH HOH . D 3 HOH A 28 528 65 HOH HOH . D 3 HOH A 29 529 15 HOH HOH . D 3 HOH A 30 530 64 HOH HOH . D 3 HOH A 31 531 81 HOH HOH . D 3 HOH A 32 532 32 HOH HOH . D 3 HOH A 33 533 149 HOH HOH . D 3 HOH A 34 534 48 HOH HOH . D 3 HOH A 35 535 7 HOH HOH . D 3 HOH A 36 536 39 HOH HOH . D 3 HOH A 37 537 80 HOH HOH . D 3 HOH A 38 538 170 HOH HOH . D 3 HOH A 39 539 107 HOH HOH . D 3 HOH A 40 540 146 HOH HOH . D 3 HOH A 41 541 42 HOH HOH . D 3 HOH A 42 542 196 HOH HOH . D 3 HOH A 43 543 27 HOH HOH . D 3 HOH A 44 544 52 HOH HOH . D 3 HOH A 45 545 86 HOH HOH . D 3 HOH A 46 546 66 HOH HOH . D 3 HOH A 47 547 177 HOH HOH . D 3 HOH A 48 548 14 HOH HOH . D 3 HOH A 49 549 160 HOH HOH . D 3 HOH A 50 550 197 HOH HOH . D 3 HOH A 51 551 4 HOH HOH . D 3 HOH A 52 552 133 HOH HOH . D 3 HOH A 53 553 8 HOH HOH . D 3 HOH A 54 554 114 HOH HOH . D 3 HOH A 55 555 132 HOH HOH . D 3 HOH A 56 556 134 HOH HOH . D 3 HOH A 57 557 31 HOH HOH . D 3 HOH A 58 558 40 HOH HOH . D 3 HOH A 59 559 94 HOH HOH . D 3 HOH A 60 560 37 HOH HOH . D 3 HOH A 61 561 148 HOH HOH . D 3 HOH A 62 562 45 HOH HOH . D 3 HOH A 63 563 101 HOH HOH . D 3 HOH A 64 564 237 HOH HOH . D 3 HOH A 65 565 89 HOH HOH . D 3 HOH A 66 566 68 HOH HOH . D 3 HOH A 67 567 30 HOH HOH . D 3 HOH A 68 568 2 HOH HOH . D 3 HOH A 69 569 55 HOH HOH . D 3 HOH A 70 570 180 HOH HOH . D 3 HOH A 71 571 128 HOH HOH . D 3 HOH A 72 572 34 HOH HOH . D 3 HOH A 73 573 24 HOH HOH . D 3 HOH A 74 574 110 HOH HOH . D 3 HOH A 75 575 78 HOH HOH . D 3 HOH A 76 576 161 HOH HOH . D 3 HOH A 77 577 20 HOH HOH . D 3 HOH A 78 578 56 HOH HOH . D 3 HOH A 79 579 57 HOH HOH . D 3 HOH A 80 580 143 HOH HOH . D 3 HOH A 81 581 139 HOH HOH . D 3 HOH A 82 582 21 HOH HOH . D 3 HOH A 83 583 38 HOH HOH . D 3 HOH A 84 584 29 HOH HOH . D 3 HOH A 85 585 41 HOH HOH . D 3 HOH A 86 586 5 HOH HOH . D 3 HOH A 87 587 6 HOH HOH . D 3 HOH A 88 588 11 HOH HOH . D 3 HOH A 89 589 213 HOH HOH . D 3 HOH A 90 590 16 HOH HOH . D 3 HOH A 91 591 17 HOH HOH . D 3 HOH A 92 592 36 HOH HOH . D 3 HOH A 93 593 92 HOH HOH . D 3 HOH A 94 594 18 HOH HOH . D 3 HOH A 95 595 116 HOH HOH . D 3 HOH A 96 596 220 HOH HOH . D 3 HOH A 97 597 53 HOH HOH . D 3 HOH A 98 598 163 HOH HOH . D 3 HOH A 99 599 155 HOH HOH . D 3 HOH A 100 600 77 HOH HOH . D 3 HOH A 101 601 51 HOH HOH . D 3 HOH A 102 602 120 HOH HOH . D 3 HOH A 103 603 75 HOH HOH . D 3 HOH A 104 604 33 HOH HOH . D 3 HOH A 105 605 3 HOH HOH . D 3 HOH A 106 606 119 HOH HOH . D 3 HOH A 107 607 104 HOH HOH . D 3 HOH A 108 608 10 HOH HOH . D 3 HOH A 109 609 83 HOH HOH . D 3 HOH A 110 610 49 HOH HOH . D 3 HOH A 111 611 13 HOH HOH . D 3 HOH A 112 612 199 HOH HOH . D 3 HOH A 113 613 50 HOH HOH . D 3 HOH A 114 614 188 HOH HOH . D 3 HOH A 115 615 54 HOH HOH . D 3 HOH A 116 616 95 HOH HOH . D 3 HOH A 117 617 22 HOH HOH . D 3 HOH A 118 618 186 HOH HOH . D 3 HOH A 119 619 71 HOH HOH . D 3 HOH A 120 620 113 HOH HOH . D 3 HOH A 121 621 147 HOH HOH . D 3 HOH A 122 622 26 HOH HOH . D 3 HOH A 123 623 58 HOH HOH . D 3 HOH A 124 624 67 HOH HOH . D 3 HOH A 125 625 140 HOH HOH . D 3 HOH A 126 626 90 HOH HOH . D 3 HOH A 127 627 61 HOH HOH . D 3 HOH A 128 628 240 HOH HOH . D 3 HOH A 129 629 127 HOH HOH . D 3 HOH A 130 630 122 HOH HOH . D 3 HOH A 131 631 93 HOH HOH . D 3 HOH A 132 632 82 HOH HOH . D 3 HOH A 133 633 103 HOH HOH . D 3 HOH A 134 634 72 HOH HOH . D 3 HOH A 135 635 100 HOH HOH . D 3 HOH A 136 636 25 HOH HOH . D 3 HOH A 137 637 174 HOH HOH . D 3 HOH A 138 638 59 HOH HOH . D 3 HOH A 139 639 118 HOH HOH . D 3 HOH A 140 640 12 HOH HOH . D 3 HOH A 141 641 243 HOH HOH . D 3 HOH A 142 642 69 HOH HOH . D 3 HOH A 143 643 44 HOH HOH . D 3 HOH A 144 644 74 HOH HOH . D 3 HOH A 145 645 189 HOH HOH . D 3 HOH A 146 646 97 HOH HOH . D 3 HOH A 147 647 150 HOH HOH . D 3 HOH A 148 648 112 HOH HOH . D 3 HOH A 149 649 219 HOH HOH . D 3 HOH A 150 650 102 HOH HOH . D 3 HOH A 151 651 184 HOH HOH . D 3 HOH A 152 652 28 HOH HOH . D 3 HOH A 153 653 203 HOH HOH . D 3 HOH A 154 654 121 HOH HOH . D 3 HOH A 155 655 109 HOH HOH . D 3 HOH A 156 656 211 HOH HOH . D 3 HOH A 157 657 145 HOH HOH . D 3 HOH A 158 658 125 HOH HOH . D 3 HOH A 159 659 234 HOH HOH . D 3 HOH A 160 660 166 HOH HOH . D 3 HOH A 161 661 204 HOH HOH . D 3 HOH A 162 662 194 HOH HOH . D 3 HOH A 163 663 129 HOH HOH . D 3 HOH A 164 664 47 HOH HOH . D 3 HOH A 165 665 19 HOH HOH . D 3 HOH A 166 666 79 HOH HOH . D 3 HOH A 167 667 185 HOH HOH . D 3 HOH A 168 668 87 HOH HOH . D 3 HOH A 169 669 242 HOH HOH . D 3 HOH A 170 670 183 HOH HOH . D 3 HOH A 171 671 84 HOH HOH . D 3 HOH A 172 672 181 HOH HOH . D 3 HOH A 173 673 176 HOH HOH . D 3 HOH A 174 674 137 HOH HOH . D 3 HOH A 175 675 117 HOH HOH . D 3 HOH A 176 676 171 HOH HOH . D 3 HOH A 177 677 73 HOH HOH . D 3 HOH A 178 678 179 HOH HOH . D 3 HOH A 179 679 212 HOH HOH . D 3 HOH A 180 680 235 HOH HOH . D 3 HOH A 181 681 111 HOH HOH . D 3 HOH A 182 682 1 HOH HOH . D 3 HOH A 183 683 60 HOH HOH . D 3 HOH A 184 684 214 HOH HOH . D 3 HOH A 185 685 141 HOH HOH . D 3 HOH A 186 686 217 HOH HOH . D 3 HOH A 187 687 165 HOH HOH . D 3 HOH A 188 688 198 HOH HOH . D 3 HOH A 189 689 63 HOH HOH . D 3 HOH A 190 690 206 HOH HOH . D 3 HOH A 191 691 154 HOH HOH . D 3 HOH A 192 692 208 HOH HOH . D 3 HOH A 193 693 136 HOH HOH . D 3 HOH A 194 694 76 HOH HOH . D 3 HOH A 195 695 232 HOH HOH . D 3 HOH A 196 696 182 HOH HOH . D 3 HOH A 197 697 173 HOH HOH . D 3 HOH A 198 698 222 HOH HOH . D 3 HOH A 199 699 187 HOH HOH . D 3 HOH A 200 700 169 HOH HOH . D 3 HOH A 201 701 205 HOH HOH . D 3 HOH A 202 702 138 HOH HOH . D 3 HOH A 203 703 144 HOH HOH . D 3 HOH A 204 704 156 HOH HOH . D 3 HOH A 205 705 167 HOH HOH . D 3 HOH A 206 706 152 HOH HOH . D 3 HOH A 207 707 142 HOH HOH . D 3 HOH A 208 708 210 HOH HOH . D 3 HOH A 209 709 88 HOH HOH . D 3 HOH A 210 710 162 HOH HOH . D 3 HOH A 211 711 135 HOH HOH . D 3 HOH A 212 712 175 HOH HOH . D 3 HOH A 213 713 151 HOH HOH . D 3 HOH A 214 714 98 HOH HOH . D 3 HOH A 215 715 124 HOH HOH . D 3 HOH A 216 716 193 HOH HOH . D 3 HOH A 217 717 106 HOH HOH . D 3 HOH A 218 718 239 HOH HOH . D 3 HOH A 219 719 202 HOH HOH . D 3 HOH A 220 720 91 HOH HOH . D 3 HOH A 221 721 178 HOH HOH . D 3 HOH A 222 722 241 HOH HOH . D 3 HOH A 223 723 218 HOH HOH . D 3 HOH A 224 724 172 HOH HOH . D 3 HOH A 225 725 226 HOH HOH . D 3 HOH A 226 726 70 HOH HOH . D 3 HOH A 227 727 230 HOH HOH . D 3 HOH A 228 728 157 HOH HOH . D 3 HOH A 229 729 228 HOH HOH . D 3 HOH A 230 730 168 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . B 2 41.247 -18.762 33.329 1 47.65 ? C1 GOL 401 A 1 HETATM 2 O O1 GOL . . . B 2 41.072 -20.019 32.724 1 45.17 ? O1 GOL 401 A 1 HETATM 3 C C2 GOL . . . B 2 40.976 -17.699 32.279 1 50.03 ? C2 GOL 401 A 1 HETATM 4 O O2 GOL . . . B 2 40.076 -16.762 32.821 1 52.35 ? O2 GOL 401 A 1 HETATM 5 C C3 GOL . . . B 2 42.278 -17.01 31.897 1 53.16 ? C3 GOL 401 A 1 HETATM 6 O O3 GOL . . . B 2 42.448 -15.861 32.698 1 54.9 ? O3 GOL 401 A 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 6 #