data_4Z1F # _model_server_result.job_id DJHahW5ZONI9PKbq5IZGHw _model_server_result.datetime_utc '2024-11-14 18:49:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4z1f # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1001}' # _entry.id 4Z1F # _exptl.entry_id 4Z1F _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 512.368 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 8-[(6-IODO-1,3-BENZODIOXOL-5-YL)THIO]-9-[3-(ISOPROPYLAMINO)PROPYL]-9H-PURIN-6-AMINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4Z1F _cell.length_a 69.223 _cell.length_b 69.223 _cell.length_c 252.522 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4Z1F _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 442 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 501 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 468 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 527 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.975 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C18 H21 I N6 O2 S' _chem_comp.formula_weight 512.368 _chem_comp.id H71 _chem_comp.mon_nstd_flag . _chem_comp.name 8-[(6-IODO-1,3-BENZODIOXOL-5-YL)THIO]-9-[3-(ISOPROPYLAMINO)PROPYL]-9H-PURIN-6-AMINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C96 C95 H71 sing 129 n n C96 H961 H71 sing 130 n n C96 H962 H71 sing 131 n n C96 H963 H71 sing 132 n n C95 C97 H71 sing 133 n n C95 N94 H71 sing 134 n n C95 H95 H71 sing 135 n n C97 H971 H71 sing 136 n n C97 H972 H71 sing 137 n n C97 H973 H71 sing 138 n n N94 C93 H71 sing 139 n n N94 HN94 H71 sing 140 n n C93 C92 H71 sing 141 n n C93 H931 H71 sing 142 n n C93 H932 H71 sing 143 n n C92 C91 H71 sing 144 n n C92 H921 H71 sing 145 n n C92 H922 H71 sing 146 n n C91 N9 H71 sing 147 n n C91 H911 H71 sing 148 n n C91 H912 H71 sing 149 n n N9 C4 H71 sing 150 n y N9 C8 H71 sing 151 n y C4 N3 H71 doub 152 n y C4 C5 H71 sing 153 n y N3 C2 H71 sing 154 n y C2 N1 H71 doub 155 n y C2 H2 H71 sing 156 n n N1 C6 H71 sing 157 n y C6 N6 H71 sing 158 n n C6 C5 H71 doub 159 n y N6 HN61 H71 sing 160 n n N6 HN62 H71 sing 161 n n C5 N7 H71 sing 162 n y N7 C8 H71 doub 163 n y C8 S H71 sing 164 n n S C1' H71 sing 165 n n C1' C6' H71 sing 166 n y C1' C2' H71 doub 167 n y C6' C5' H71 doub 168 n y C6' H6' H71 sing 169 n n C5' O3' H71 sing 170 n n C5' C4' H71 sing 171 n y O3' "C'2" H71 sing 172 n n "C'2" O1' H71 sing 173 n n "C'2" "H'21" H71 sing 174 n n "C'2" "H'22" H71 sing 175 n n O1' C4' H71 sing 176 n n C4' C3' H71 doub 177 n y C3' C2' H71 sing 178 n y C3' H3' H71 sing 179 n n C2' I H71 sing 180 n n # _atom_sites.entry_id 4Z1F _atom_sites.fract_transf_matrix[1][1] 0.014446 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014446 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00396 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 H71 A 1 1001 1001 H71 H71 . C 3 HOH A 1 1101 9 HOH HOH . C 3 HOH A 2 1102 4 HOH HOH . C 3 HOH A 3 1103 27 HOH HOH . C 3 HOH A 4 1104 16 HOH HOH . C 3 HOH A 5 1105 25 HOH HOH . C 3 HOH A 6 1106 23 HOH HOH . C 3 HOH A 7 1107 33 HOH HOH . C 3 HOH A 8 1108 5 HOH HOH . C 3 HOH A 9 1109 32 HOH HOH . C 3 HOH A 10 1110 7 HOH HOH . C 3 HOH A 11 1111 2 HOH HOH . C 3 HOH A 12 1112 19 HOH HOH . C 3 HOH A 13 1113 6 HOH HOH . C 3 HOH A 14 1114 12 HOH HOH . C 3 HOH A 15 1115 3 HOH HOH . C 3 HOH A 16 1116 21 HOH HOH . C 3 HOH A 17 1117 29 HOH HOH . C 3 HOH A 18 1118 10 HOH HOH . C 3 HOH A 19 1119 26 HOH HOH . C 3 HOH A 20 1120 31 HOH HOH . C 3 HOH A 21 1121 17 HOH HOH . C 3 HOH A 22 1122 28 HOH HOH . C 3 HOH A 23 1123 18 HOH HOH . C 3 HOH A 24 1124 1 HOH HOH . C 3 HOH A 25 1125 15 HOH HOH . C 3 HOH A 26 1126 14 HOH HOH . C 3 HOH A 27 1127 13 HOH HOH . C 3 HOH A 28 1128 20 HOH HOH . C 3 HOH A 29 1129 8 HOH HOH . C 3 HOH A 30 1130 34 HOH HOH . C 3 HOH A 31 1131 22 HOH HOH . C 3 HOH A 32 1132 11 HOH HOH . C 3 HOH A 33 1133 30 HOH HOH . C 3 HOH A 34 1134 24 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C96 H71 . . . B 2 4.566 6.987 29.046 1 66.97 ? C96 H71 1001 A 1 HETATM 2 C C95 H71 . . . B 2 3.79 6.478 27.865 1 91.21 ? C95 H71 1001 A 1 HETATM 3 C C97 H71 . . . B 2 2.674 5.601 28.34 1 94.33 ? C97 H71 1001 A 1 HETATM 4 N N94 H71 . . . B 2 3.245 7.6 27.121 1 88.17 ? N94 H71 1001 A 1 HETATM 5 C C93 H71 . . . B 2 2.651 7.14 25.872 1 66.9 ? C93 H71 1001 A 1 HETATM 6 C C92 H71 . . . B 2 3.464 7.675 24.701 1 57.67 ? C92 H71 1001 A 1 HETATM 7 C C91 H71 . . . B 2 4.552 6.676 24.347 1 61.9 ? C91 H71 1001 A 1 HETATM 8 N N9 H71 . . . B 2 5.829 7.386 24.166 1 53.96 ? N9 H71 1001 A 1 HETATM 9 C C4 H71 . . . B 2 6.742 7.822 25.218 1 51.27 ? C4 H71 1001 A 1 HETATM 10 N N3 H71 . . . B 2 6.722 7.729 26.551 1 51.18 ? N3 H71 1001 A 1 HETATM 11 C C2 H71 . . . B 2 7.732 8.239 27.295 1 48.2 ? C2 H71 1001 A 1 HETATM 12 N N1 H71 . . . B 2 8.802 8.858 26.725 1 47.08 ? N1 H71 1001 A 1 HETATM 13 C C6 H71 . . . B 2 8.872 8.979 25.39 1 41.6 ? C6 H71 1001 A 1 HETATM 14 N N6 H71 . . . B 2 10.004 9.635 24.777 1 32.52 ? N6 H71 1001 A 1 HETATM 15 C C5 H71 . . . B 2 7.852 8.469 24.586 1 45.3 ? C5 H71 1001 A 1 HETATM 16 N N7 H71 . . . B 2 7.615 8.424 23.151 1 40.87 ? N7 H71 1001 A 1 HETATM 17 C C8 H71 . . . B 2 6.392 7.777 22.937 1 49.66 ? C8 H71 1001 A 1 HETATM 18 S S H71 . . . B 2 5.661 7.462 21.358 1 73.79 ? S H71 1001 A 1 HETATM 19 C C1' H71 . . . B 2 6.02 5.756 21.043 1 84 ? C1' H71 1001 A 1 HETATM 20 C C6' H71 . . . B 2 7.345 5.36 21.078 1 73.39 ? C6' H71 1001 A 1 HETATM 21 C C5' H71 . . . B 2 7.676 4.032 20.847 1 72.54 ? C5' H71 1001 A 1 HETATM 22 O O3' H71 . . . B 2 8.888 3.392 20.821 1 69 ? O3' H71 1001 A 1 HETATM 23 C "C'2" H71 . . . B 2 8.642 2.16 20.238 1 71.16 ? "C'2" H71 1001 A 1 HETATM 24 O O1' H71 . . . B 2 7.289 1.898 20.401 1 84.28 ? O1' H71 1001 A 1 HETATM 25 C C4' H71 . . . B 2 6.688 3.113 20.589 1 78.16 ? C4' H71 1001 A 1 HETATM 26 C C3' H71 . . . B 2 5.352 3.511 20.559 1 90.77 ? C3' H71 1001 A 1 HETATM 27 C C2' H71 . . . B 2 5.015 4.836 20.79 1 94.49 ? C2' H71 1001 A 1 HETATM 28 I I H71 . . . B 2 2.989 5.438 20.744 1 167.8 ? I H71 1001 A 1 # _model_server_stats.io_time_ms 71 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 22 _model_server_stats.query_time_ms 391 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 28 #