data_4Z1H # _model_server_result.job_id -xAFe7zPJEPHn4qVpX0MMg _model_server_result.datetime_utc '2025-02-16 22:03:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4z1h # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":601}' # _entry.id 4Z1H # _exptl.entry_id 4Z1H _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 759.639 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 8-[(6-iodo-1,3-benzodioxol-5-yl)sulfanyl]-9-[6-(triphenyl-lambda~5~-phosphanyl)hexyl]-9H-purin-6-amine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4Z1H _cell.length_a 69.336 _cell.length_b 69.336 _cell.length_c 255.774 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4Z1H _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 442 A CYS 501 1_555 A SG CYS 468 A CYS 527 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? covale ? covale1 A SG CYS 442 A CYS 501 1_555 A CB CYS 468 A CYS 527 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.641 ? # _chem_comp.formula 'C36 H35 I N5 O2 P S' _chem_comp.formula_weight 759.639 _chem_comp.id 4KP _chem_comp.mon_nstd_flag . _chem_comp.name 8-[(6-iodo-1,3-benzodioxol-5-yl)sulfanyl]-9-[6-(triphenyl-lambda~5~-phosphanyl)hexyl]-9H-purin-6-amine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C12 4KP sing 1 n n O1 C11 4KP sing 2 n n C12 O2 4KP sing 3 n n C6 C11 4KP doub 4 n y C6 C7 4KP sing 5 n y C11 C10 4KP sing 6 n y I1 C7 4KP sing 7 n n O2 C10 4KP sing 8 n n C7 C8 4KP doub 9 n y C10 C9 4KP doub 10 n y C8 C9 4KP sing 11 n y C8 S1 4KP sing 12 n n S1 C3 4KP sing 13 n n C3 N4 4KP doub 14 n y C3 N5 4KP sing 15 n y N4 C4 4KP sing 16 n y C36 C31 4KP doub 17 n y C36 C35 4KP sing 18 n y N5 C13 4KP sing 19 n n N5 C5 4KP sing 20 n y C4 C1 4KP doub 21 n y C4 C5 4KP sing 22 n y N1 C1 4KP sing 23 n n C31 C32 4KP sing 24 n y C13 C14 4KP sing 25 n n C1 N2 4KP sing 26 n y C5 N3 4KP doub 27 n y C35 C34 4KP doub 28 n y C18 C15 4KP sing 29 n n C18 C16 4KP sing 30 n n C15 C14 4KP sing 31 n n C32 C33 4KP doub 32 n y N2 C2 4KP doub 33 n y C34 C33 4KP sing 34 n y C34 P1 4KP sing 35 n n N3 C2 4KP sing 36 n y C16 C17 4KP sing 37 n n C17 P1 4KP sing 38 n n P1 C22 4KP sing 39 n n P1 C28 4KP sing 40 n n C21 C22 4KP doub 41 n y C21 C20 4KP sing 42 n y C22 C23 4KP sing 43 n y C20 C19 4KP doub 44 n y C23 C24 4KP doub 45 n y C19 C24 4KP sing 46 n y C28 C27 4KP doub 47 n y C28 C29 4KP sing 48 n y C27 C26 4KP sing 49 n y C29 C30 4KP doub 50 n y C26 C25 4KP doub 51 n y C30 C25 4KP sing 52 n y C2 H1 4KP sing 53 n n N1 H2 4KP sing 54 n n N1 H3 4KP sing 55 n n C6 H4 4KP sing 56 n n C9 H5 4KP sing 57 n n C12 H6 4KP sing 58 n n C13 H7 4KP sing 59 n n C13 H8 4KP sing 60 n n C14 H9 4KP sing 61 n n C14 H10 4KP sing 62 n n C15 H11 4KP sing 63 n n C15 H12 4KP sing 64 n n C16 H13 4KP sing 65 n n C16 H14 4KP sing 66 n n C17 H15 4KP sing 67 n n C17 H16 4KP sing 68 n n C18 H17 4KP sing 69 n n C18 H18 4KP sing 70 n n C19 H19 4KP sing 71 n n C20 H20 4KP sing 72 n n C21 H21 4KP sing 73 n n C23 H22 4KP sing 74 n n C24 H23 4KP sing 75 n n C25 H24 4KP sing 76 n n C26 H25 4KP sing 77 n n C27 H26 4KP sing 78 n n C29 H27 4KP sing 79 n n C30 H28 4KP sing 80 n n C31 H29 4KP sing 81 n n C32 H30 4KP sing 82 n n C33 H31 4KP sing 83 n n C35 H32 4KP sing 84 n n C36 H33 4KP sing 85 n n C12 H34 4KP sing 86 n n P1 H35 4KP sing 87 n n # _atom_sites.entry_id 4Z1H _atom_sites.fract_transf_matrix[1][1] 0.014423 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014423 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00391 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 4KP A 1 601 999 4KP UNK . C 3 HOH A 1 701 13 HOH HOH . C 3 HOH A 2 702 11 HOH HOH . C 3 HOH A 3 703 9 HOH HOH . C 3 HOH A 4 704 5 HOH HOH . C 3 HOH A 5 705 20 HOH HOH . C 3 HOH A 6 706 7 HOH HOH . C 3 HOH A 7 707 3 HOH HOH . C 3 HOH A 8 708 6 HOH HOH . C 3 HOH A 9 709 10 HOH HOH . C 3 HOH A 10 710 17 HOH HOH . C 3 HOH A 11 711 14 HOH HOH . C 3 HOH A 12 712 2 HOH HOH . C 3 HOH A 13 713 21 HOH HOH . C 3 HOH A 14 714 12 HOH HOH . C 3 HOH A 15 715 1 HOH HOH . C 3 HOH A 16 716 8 HOH HOH . C 3 HOH A 17 717 15 HOH HOH . C 3 HOH A 18 718 4 HOH HOH . C 3 HOH A 19 719 18 HOH HOH . C 3 HOH A 20 720 19 HOH HOH . C 3 HOH A 21 721 16 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 4KP . . . B 2 8.928 9.748 25.597 1 39.28 ? C1 4KP 601 A 1 HETATM 2 C C2 4KP . . . B 2 8.012 8.886 27.582 1 49.07 ? C2 4KP 601 A 1 HETATM 3 N N1 4KP . . . B 2 9.979 10.441 24.917 1 42.13 ? N1 4KP 601 A 1 HETATM 4 N N2 4KP . . . B 2 8.988 9.532 26.932 1 45.68 ? N2 4KP 601 A 1 HETATM 5 N N3 4KP . . . B 2 6.919 8.414 26.97 1 42.38 ? N3 4KP 601 A 1 HETATM 6 C C3 4KP . . . B 2 6.173 8.672 23.479 1 48.64 ? C3 4KP 601 A 1 HETATM 7 C C4 4KP . . . B 2 7.766 9.255 24.89 1 40.37 ? C4 4KP 601 A 1 HETATM 8 C C5 4KP . . . B 2 6.76 8.579 25.612 1 42.69 ? C5 4KP 601 A 1 HETATM 9 N N4 4KP . . . B 2 7.368 9.286 23.56 1 52.07 ? N4 4KP 601 A 1 HETATM 10 N N5 4KP . . . B 2 5.785 8.223 24.685 1 43.88 ? N5 4KP 601 A 1 HETATM 11 S S1 4KP . . . B 2 5.24 8.422 21.997 1 94.51 ? S1 4KP 601 A 1 HETATM 12 C C6 4KP . . . B 2 4.923 4.422 21.227 1 86.35 ? C6 4KP 601 A 1 HETATM 13 C C7 4KP . . . B 2 4.561 5.756 21.448 1 81.54 ? C7 4KP 601 A 1 HETATM 14 C C8 4KP . . . B 2 5.58 6.705 21.689 1 74.53 ? C8 4KP 601 A 1 HETATM 15 C C9 4KP . . . B 2 6.929 6.325 21.72 1 68.98 ? C9 4KP 601 A 1 HETATM 16 I I1 4KP . . . B 2 2.512 6.274 21.407 1 116.13 ? I1 4KP 601 A 1 HETATM 17 C C10 4KP . . . B 2 7.284 4.975 21.492 1 72.16 ? C10 4KP 601 A 1 HETATM 18 C C11 4KP . . . B 2 6.288 4.029 21.249 1 80.47 ? C11 4KP 601 A 1 HETATM 19 O O1 4KP . . . B 2 6.929 2.791 21.061 1 79.51 ? O1 4KP 601 A 1 HETATM 20 O O2 4KP . . . B 2 8.501 4.282 21.447 1 69.11 ? O2 4KP 601 A 1 HETATM 21 C C12 4KP . . . B 2 8.241 2.999 21.19 1 70.41 ? C12 4KP 601 A 1 HETATM 22 C C13 4KP . . . B 2 4.554 7.515 24.984 1 38.36 ? C13 4KP 601 A 1 HETATM 23 C C14 4KP . . . B 2 3.782 8.244 26.115 1 39.13 ? C14 4KP 601 A 1 HETATM 24 C C15 4KP . . . B 2 2.342 8.618 25.693 1 38.01 ? C15 4KP 601 A 1 HETATM 25 C C16 4KP . . . B 2 0.669 7.175 27.003 1 101.63 ? C16 4KP 601 A 1 HETATM 26 C C17 4KP . . . B 2 0.726 5.722 27.532 1 103.12 ? C17 4KP 601 A 1 HETATM 27 C C18 4KP . . . B 2 1.411 7.378 25.654 1 66.57 ? C18 4KP 601 A 1 HETATM 28 C C19 4KP . . . B 2 -1.479 0.647 28.438 1 102.95 ? C19 4KP 601 A 1 HETATM 29 C C20 4KP . . . B 2 -0.186 1.18 28.356 1 100.83 ? C20 4KP 601 A 1 HETATM 30 C C21 4KP . . . B 2 0.003 2.561 28.274 1 101.14 ? C21 4KP 601 A 1 HETATM 31 C C22 4KP . . . B 2 -1.112 3.416 28.284 1 102.26 ? C22 4KP 601 A 1 HETATM 32 C C23 4KP . . . B 2 -2.397 2.881 28.374 1 103.8 ? C23 4KP 601 A 1 HETATM 33 C C24 4KP . . . B 2 -2.587 1.496 28.449 1 103.59 ? C24 4KP 601 A 1 HETATM 34 C C25 4KP . . . B 2 -1.241 7.415 32.297 1 128.66 ? C25 4KP 601 A 1 HETATM 35 C C26 4KP . . . B 2 -1.435 8.152 31.123 1 129.59 ? C26 4KP 601 A 1 HETATM 36 C C27 4KP . . . B 2 -1.351 7.525 29.88 1 129.91 ? C27 4KP 601 A 1 HETATM 37 C C28 4KP . . . B 2 -1.079 6.156 29.805 1 129.36 ? C28 4KP 601 A 1 HETATM 38 C C29 4KP . . . B 2 -0.879 5.428 30.981 1 127.49 ? C29 4KP 601 A 1 HETATM 39 C C30 4KP . . . B 2 -0.962 6.052 32.228 1 127.29 ? C30 4KP 601 A 1 HETATM 40 P P1 4KP . . . B 2 -0.942 5.26 28.193 1 300.86 ? P1 4KP 601 A 1 HETATM 41 C C31 4KP . . . B 2 -4.066 6.541 24.98 1 102.68 ? C31 4KP 601 A 1 HETATM 42 C C32 4KP . . . B 2 -4.162 7.069 26.272 1 100.53 ? C32 4KP 601 A 1 HETATM 43 C C33 4KP . . . B 2 -3.237 6.698 27.255 1 100.87 ? C33 4KP 601 A 1 HETATM 44 C C34 4KP . . . B 2 -2.21 5.799 26.945 1 100.86 ? C34 4KP 601 A 1 HETATM 45 C C35 4KP . . . B 2 -2.123 5.276 25.652 1 99.29 ? C35 4KP 601 A 1 HETATM 46 C C36 4KP . . . B 2 -3.046 5.642 24.665 1 101.58 ? C36 4KP 601 A 1 # _model_server_stats.io_time_ms 129 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 314 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 46 #