data_4Z1M # _model_server_result.job_id 1S-AQHwlhRpGmHDo3RsCgA _model_server_result.datetime_utc '2024-11-08 20:38:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4z1m # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"CA","auth_seq_id":502}' # _entry.id 4Z1M # _exptl.entry_id 4Z1M _exptl.method 'X-RAY DIFFRACTION' # _entity.details 'K39A mutation plus C-ter 6His tag' _entity.formula_weight 24.305 _entity.id 6 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation K39A _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4Z1M _cell.length_a 108.773 _cell.length_b 155.286 _cell.length_c 271.018 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4Z1M _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details decameric _pdbx_struct_assembly.oligomeric_count 10 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 L N N ? 6 O N N ? 6 S N N ? 6 W N N ? 6 CA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG1 THR 176 A THR 176 1_555 L MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.178 ? metalc ? metalc2 K O2G ATP . A ATP 601 1_555 L MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.179 ? metalc ? metalc3 K O2B ATP . A ATP 601 1_555 L MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.179 ? metalc ? metalc4 L MG MG . A MG 602 1_555 HA O HOH . A HOH 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.18 ? metalc ? metalc5 L MG MG . A MG 602 1_555 HA O HOH . A HOH 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.18 ? metalc ? metalc6 L MG MG . A MG 602 1_555 HA O HOH . A HOH 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.18 ? metalc ? metalc7 B OG1 THR 176 B THR 176 1_555 O MG MG . B MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.178 ? metalc ? metalc8 N O2G ATP . B ATP 601 1_555 O MG MG . B MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.179 ? metalc ? metalc9 N O2B ATP . B ATP 601 1_555 O MG MG . B MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.179 ? metalc ? metalc10 O MG MG . B MG 602 1_555 IA O HOH . B HOH 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.18 ? metalc ? metalc11 O MG MG . B MG 602 1_555 IA O HOH . B HOH 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.179 ? metalc ? metalc12 O MG MG . B MG 602 1_555 IA O HOH . B HOH 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.178 ? metalc ? metalc13 C OG1 THR 176 C THR 176 1_555 S MG MG . C MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.181 ? metalc ? metalc14 R O2G ATP . C ATP 601 1_555 S MG MG . C MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.179 ? metalc ? metalc15 R O2B ATP . C ATP 601 1_555 S MG MG . C MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.179 ? metalc ? metalc16 S MG MG . C MG 602 1_555 JA O HOH . C HOH 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.179 ? metalc ? metalc17 S MG MG . C MG 602 1_555 JA O HOH . C HOH 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.18 ? metalc ? metalc18 S MG MG . C MG 602 1_555 JA O HOH . C HOH 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.18 ? metalc ? metalc19 D OG1 THR 167 D THR 163 1_555 W MG MG . D MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.179 ? metalc ? metalc20 V O2B ADP . D ADP 600 1_555 W MG MG . D MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.179 ? metalc ? metalc21 W MG MG . D MG 601 1_555 KA O HOH . D HOH 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.18 ? metalc ? metalc22 W MG MG . D MG 601 1_555 KA O HOH . D HOH 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.178 ? metalc ? metalc23 W MG MG . D MG 601 1_555 KA O HOH . D HOH 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.179 ? metalc ? metalc24 W MG MG . D MG 601 1_555 KA O HOH . D HOH 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.18 ? metalc ? metalc25 F OG1 THR 167 F THR 163 1_555 CA MG MG . F MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.178 ? metalc ? metalc26 BA O2B ADP . F ADP 501 1_555 CA MG MG . F MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.18 ? metalc ? metalc27 CA MG MG . F MG 502 1_555 MA O HOH . F HOH 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.179 ? metalc ? metalc28 CA MG MG . F MG 502 1_555 MA O HOH . F HOH 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.18 ? metalc ? metalc29 CA MG MG . F MG 502 1_555 MA O HOH . F HOH 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.179 ? metalc ? metalc30 CA MG MG . F MG 502 1_555 MA O HOH . F HOH 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.181 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4Z1M _atom_sites.fract_transf_matrix[1][1] 0.009193 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00644 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00369 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code K 5 ATP A 1 601 600 ATP ATP . L 6 MG A 1 602 601 MG MG . M 7 GOL A 1 603 4 GOL GOL . N 5 ATP B 1 601 600 ATP ATP . O 6 MG B 1 602 601 MG MG . P 8 CL B 1 603 10 CL CL . Q 7 GOL B 1 604 3 GOL GOL . R 5 ATP C 1 601 600 ATP ATP . S 6 MG C 1 602 601 MG MG . T 8 CL C 1 603 11 CL CL . U 8 CL C 1 604 13 CL CL . V 9 ADP D 1 600 600 ADP ADP . W 6 MG D 1 601 601 MG MG . X 8 CL E 1 501 1 CL CL . Y 8 CL E 1 502 2 CL CL . Z 8 CL E 1 503 7 CL CL . AA 8 CL E 1 504 12 CL CL . BA 9 ADP F 1 501 600 ADP ADP . CA 6 MG F 1 502 601 MG MG . DA 8 CL F 1 503 5 CL CL . EA 8 CL F 1 504 6 CL CL . FA 8 CL G 1 301 8 CL CL . GA 8 CL G 1 302 9 CL CL . HA 10 HOH A 1 701 42 HOH HOH . HA 10 HOH A 2 702 701 HOH HOH . HA 10 HOH A 3 703 703 HOH HOH . HA 10 HOH A 4 704 702 HOH HOH . IA 10 HOH B 1 701 703 HOH HOH . IA 10 HOH B 2 702 701 HOH HOH . IA 10 HOH B 3 703 702 HOH HOH . IA 10 HOH B 4 704 14 HOH HOH . JA 10 HOH C 1 701 43 HOH HOH . JA 10 HOH C 2 702 11 HOH HOH . JA 10 HOH C 3 703 702 HOH HOH . JA 10 HOH C 4 704 703 HOH HOH . JA 10 HOH C 5 705 701 HOH HOH . KA 10 HOH D 1 701 9 HOH HOH . KA 10 HOH D 2 702 701 HOH HOH . KA 10 HOH D 3 703 703 HOH HOH . KA 10 HOH D 4 704 702 HOH HOH . KA 10 HOH D 5 705 704 HOH HOH . LA 10 HOH E 1 601 23 HOH HOH . LA 10 HOH E 2 602 4 HOH HOH . LA 10 HOH E 3 603 13 HOH HOH . MA 10 HOH F 1 601 703 HOH HOH . MA 10 HOH F 2 602 701 HOH HOH . MA 10 HOH F 3 603 702 HOH HOH . MA 10 HOH F 4 604 704 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id CA _atom_site.label_entity_id 6 _atom_site.Cartn_x 62.659 _atom_site.Cartn_y -2.647 _atom_site.Cartn_z -34.963 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 67.12 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 502 _atom_site.auth_asym_id F _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 41 _model_server_stats.query_time_ms 300 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #