data_4Z1Q # _model_server_result.job_id RqBEVmDu-M-AEBolEKc_oQ _model_server_result.datetime_utc '2024-12-26 22:25:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4z1q # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":201}' # _entry.id 4Z1Q # _exptl.entry_id 4Z1Q _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 416.906 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5-[(4R)-6-(4-chlorophenyl)-1,4-dimethyl-5,6-dihydro-4H-[1,2,4]triazolo[4,3-a][1,5]benzodiazepin-8-yl]pyridin-2-amine _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 83.07 _cell.angle_beta 75.35 _cell.angle_gamma 89.85 _cell.entry_id 4Z1Q _cell.length_a 30.293 _cell.length_b 39.501 _cell.length_c 57.23 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4Z1Q _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E 1 1 B,D,F 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C23 H21 Cl N6' _chem_comp.formula_weight 416.906 _chem_comp.id 558 _chem_comp.mon_nstd_flag . _chem_comp.name 5-[(4R)-6-(4-chlorophenyl)-1,4-dimethyl-5,6-dihydro-4H-[1,2,4]triazolo[4,3-a][1,5]benzodiazepin-8-yl]pyridin-2-amine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag NAI NAH 558 sing 1 n y NAI CAJ 558 doub 2 n y CBC CAJ 558 sing 3 n n NAH CAG 558 doub 4 n y CAJ NAA 558 sing 5 n y CAG NAA 558 sing 6 n y CAG CAF 558 sing 7 n n NAA CAB 558 sing 8 n n CBB CAF 558 sing 9 n n CAK CAB 558 doub 10 n y CAK CAL 558 sing 11 n y CAF CAE 558 sing 12 n n CAB CAC 558 sing 13 n y CAL CAM 558 doub 14 n y CAE NAD 558 sing 15 n n CAC NAD 558 sing 16 n n CAC CAN 558 doub 17 n y CAM CAN 558 sing 18 n y CAM CAO 558 sing 19 n n NAD CAP 558 sing 20 n n CAQ CAO 558 doub 21 n y CAQ NAR 558 sing 22 n y CAO CAU 558 sing 23 n y CAP CAV 558 doub 24 n y CAP CAZ 558 sing 25 n y NAR CAS 558 doub 26 n y CAU CAT 558 doub 27 n y CAV CAW 558 sing 28 n y CAZ CAY 558 doub 29 n y CAS CAT 558 sing 30 n y CAS NBA 558 sing 31 n n CAW CAX 558 doub 32 n y CAY CAX 558 sing 33 n y CAX CLB 558 sing 34 n n CAU H1 558 sing 35 n n CAT H2 558 sing 36 n n NBA H3 558 sing 37 n n NBA H4 558 sing 38 n n CAQ H5 558 sing 39 n n CAN H6 558 sing 40 n n CAL H7 558 sing 41 n n CAK H8 558 sing 42 n n CBC H9 558 sing 43 n n CBC H10 558 sing 44 n n CBC H11 558 sing 45 n n CAF H12 558 sing 46 n n CBB H13 558 sing 47 n n CBB H14 558 sing 48 n n CBB H15 558 sing 49 n n CAE H16 558 sing 50 n n CAE H17 558 sing 51 n n CAV H18 558 sing 52 n n CAW H19 558 sing 53 n n CAY H20 558 sing 54 n n CAZ H21 558 sing 55 n n # _atom_sites.entry_id 4Z1Q _atom_sites.fract_transf_matrix[1][1] 0.033011 _atom_sites.fract_transf_matrix[1][2] -0.000088 _atom_sites.fract_transf_matrix[1][3] -0.008687 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.025316 _atom_sites.fract_transf_matrix[2][3] -0.003163 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018201 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 558 A 1 201 1 558 558 . D 2 558 B 1 201 1 558 558 . E 3 HOH A 1 301 151 HOH HOH . E 3 HOH A 2 302 184 HOH HOH . E 3 HOH A 3 303 178 HOH HOH . E 3 HOH A 4 304 20 HOH HOH . E 3 HOH A 5 305 194 HOH HOH . E 3 HOH A 6 306 48 HOH HOH . E 3 HOH A 7 307 177 HOH HOH . E 3 HOH A 8 308 19 HOH HOH . E 3 HOH A 9 309 191 HOH HOH . E 3 HOH A 10 310 135 HOH HOH . E 3 HOH A 11 311 73 HOH HOH . E 3 HOH A 12 312 142 HOH HOH . E 3 HOH A 13 313 132 HOH HOH . E 3 HOH A 14 314 15 HOH HOH . E 3 HOH A 15 315 137 HOH HOH . E 3 HOH A 16 316 60 HOH HOH . E 3 HOH A 17 317 71 HOH HOH . E 3 HOH A 18 318 58 HOH HOH . E 3 HOH A 19 319 68 HOH HOH . E 3 HOH A 20 320 183 HOH HOH . E 3 HOH A 21 321 22 HOH HOH . E 3 HOH A 22 322 143 HOH HOH . E 3 HOH A 23 323 192 HOH HOH . E 3 HOH A 24 324 54 HOH HOH . E 3 HOH A 25 325 129 HOH HOH . E 3 HOH A 26 326 14 HOH HOH . E 3 HOH A 27 327 46 HOH HOH . E 3 HOH A 28 328 8 HOH HOH . E 3 HOH A 29 329 130 HOH HOH . E 3 HOH A 30 330 63 HOH HOH . E 3 HOH A 31 331 17 HOH HOH . E 3 HOH A 32 332 42 HOH HOH . E 3 HOH A 33 333 49 HOH HOH . E 3 HOH A 34 334 147 HOH HOH . E 3 HOH A 35 335 75 HOH HOH . E 3 HOH A 36 336 2 HOH HOH . E 3 HOH A 37 337 195 HOH HOH . E 3 HOH A 38 338 18 HOH HOH . E 3 HOH A 39 339 36 HOH HOH . E 3 HOH A 40 340 61 HOH HOH . E 3 HOH A 41 341 21 HOH HOH . E 3 HOH A 42 342 51 HOH HOH . E 3 HOH A 43 343 59 HOH HOH . E 3 HOH A 44 344 64 HOH HOH . E 3 HOH A 45 345 149 HOH HOH . E 3 HOH A 46 346 169 HOH HOH . E 3 HOH A 47 347 57 HOH HOH . E 3 HOH A 48 348 10 HOH HOH . E 3 HOH A 49 349 166 HOH HOH . E 3 HOH A 50 350 1 HOH HOH . E 3 HOH A 51 351 141 HOH HOH . E 3 HOH A 52 352 9 HOH HOH . E 3 HOH A 53 353 23 HOH HOH . E 3 HOH A 54 354 69 HOH HOH . E 3 HOH A 55 355 212 HOH HOH . E 3 HOH A 56 356 189 HOH HOH . E 3 HOH A 57 357 52 HOH HOH . E 3 HOH A 58 358 12 HOH HOH . E 3 HOH A 59 359 43 HOH HOH . E 3 HOH A 60 360 37 HOH HOH . E 3 HOH A 61 361 13 HOH HOH . E 3 HOH A 62 362 39 HOH HOH . E 3 HOH A 63 363 3 HOH HOH . E 3 HOH A 64 364 4 HOH HOH . E 3 HOH A 65 365 72 HOH HOH . E 3 HOH A 66 366 139 HOH HOH . E 3 HOH A 67 367 122 HOH HOH . E 3 HOH A 68 368 56 HOH HOH . E 3 HOH A 69 369 146 HOH HOH . E 3 HOH A 70 370 41 HOH HOH . E 3 HOH A 71 371 66 HOH HOH . E 3 HOH A 72 372 144 HOH HOH . E 3 HOH A 73 373 198 HOH HOH . E 3 HOH A 74 374 136 HOH HOH . E 3 HOH A 75 375 40 HOH HOH . E 3 HOH A 76 376 168 HOH HOH . E 3 HOH A 77 377 211 HOH HOH . E 3 HOH A 78 378 74 HOH HOH . E 3 HOH A 79 379 167 HOH HOH . E 3 HOH A 80 380 134 HOH HOH . E 3 HOH A 81 381 186 HOH HOH . E 3 HOH A 82 382 50 HOH HOH . E 3 HOH A 83 383 67 HOH HOH . E 3 HOH A 84 384 38 HOH HOH . E 3 HOH A 85 385 181 HOH HOH . E 3 HOH A 86 386 188 HOH HOH . E 3 HOH A 87 387 47 HOH HOH . E 3 HOH A 88 388 182 HOH HOH . E 3 HOH A 89 389 187 HOH HOH . E 3 HOH A 90 390 133 HOH HOH . E 3 HOH A 91 391 131 HOH HOH . E 3 HOH A 92 392 5 HOH HOH . E 3 HOH A 93 393 179 HOH HOH . E 3 HOH A 94 394 140 HOH HOH . E 3 HOH A 95 395 6 HOH HOH . E 3 HOH A 96 396 155 HOH HOH . E 3 HOH A 97 397 11 HOH HOH . E 3 HOH A 98 398 138 HOH HOH . E 3 HOH A 99 399 45 HOH HOH . E 3 HOH A 100 400 148 HOH HOH . E 3 HOH A 101 401 70 HOH HOH . E 3 HOH A 102 402 180 HOH HOH . E 3 HOH A 103 403 196 HOH HOH . E 3 HOH A 104 404 150 HOH HOH . E 3 HOH A 105 405 44 HOH HOH . E 3 HOH A 106 406 7 HOH HOH . F 3 HOH B 1 301 117 HOH HOH . F 3 HOH B 2 302 152 HOH HOH . F 3 HOH B 3 303 88 HOH HOH . F 3 HOH B 4 304 89 HOH HOH . F 3 HOH B 5 305 175 HOH HOH . F 3 HOH B 6 306 170 HOH HOH . F 3 HOH B 7 307 106 HOH HOH . F 3 HOH B 8 308 119 HOH HOH . F 3 HOH B 9 309 123 HOH HOH . F 3 HOH B 10 310 90 HOH HOH . F 3 HOH B 11 311 86 HOH HOH . F 3 HOH B 12 312 161 HOH HOH . F 3 HOH B 13 313 111 HOH HOH . F 3 HOH B 14 314 92 HOH HOH . F 3 HOH B 15 315 65 HOH HOH . F 3 HOH B 16 316 107 HOH HOH . F 3 HOH B 17 317 94 HOH HOH . F 3 HOH B 18 318 35 HOH HOH . F 3 HOH B 19 319 55 HOH HOH . F 3 HOH B 20 320 85 HOH HOH . F 3 HOH B 21 321 206 HOH HOH . F 3 HOH B 22 322 99 HOH HOH . F 3 HOH B 23 323 31 HOH HOH . F 3 HOH B 24 324 174 HOH HOH . F 3 HOH B 25 325 112 HOH HOH . F 3 HOH B 26 326 34 HOH HOH . F 3 HOH B 27 327 28 HOH HOH . F 3 HOH B 28 328 200 HOH HOH . F 3 HOH B 29 329 128 HOH HOH . F 3 HOH B 30 330 78 HOH HOH . F 3 HOH B 31 331 76 HOH HOH . F 3 HOH B 32 332 208 HOH HOH . F 3 HOH B 33 333 154 HOH HOH . F 3 HOH B 34 334 79 HOH HOH . F 3 HOH B 35 335 127 HOH HOH . F 3 HOH B 36 336 87 HOH HOH . F 3 HOH B 37 337 98 HOH HOH . F 3 HOH B 38 338 82 HOH HOH . F 3 HOH B 39 339 102 HOH HOH . F 3 HOH B 40 340 24 HOH HOH . F 3 HOH B 41 341 162 HOH HOH . F 3 HOH B 42 342 32 HOH HOH . F 3 HOH B 43 343 33 HOH HOH . F 3 HOH B 44 344 164 HOH HOH . F 3 HOH B 45 345 201 HOH HOH . F 3 HOH B 46 346 163 HOH HOH . F 3 HOH B 47 347 29 HOH HOH . F 3 HOH B 48 348 25 HOH HOH . F 3 HOH B 49 349 100 HOH HOH . F 3 HOH B 50 350 114 HOH HOH . F 3 HOH B 51 351 156 HOH HOH . F 3 HOH B 52 352 165 HOH HOH . F 3 HOH B 53 353 104 HOH HOH . F 3 HOH B 54 354 93 HOH HOH . F 3 HOH B 55 355 105 HOH HOH . F 3 HOH B 56 356 80 HOH HOH . F 3 HOH B 57 357 101 HOH HOH . F 3 HOH B 58 358 205 HOH HOH . F 3 HOH B 59 359 209 HOH HOH . F 3 HOH B 60 360 95 HOH HOH . F 3 HOH B 61 361 157 HOH HOH . F 3 HOH B 62 362 103 HOH HOH . F 3 HOH B 63 363 158 HOH HOH . F 3 HOH B 64 364 172 HOH HOH . F 3 HOH B 65 365 120 HOH HOH . F 3 HOH B 66 366 204 HOH HOH . F 3 HOH B 67 367 53 HOH HOH . F 3 HOH B 68 368 185 HOH HOH . F 3 HOH B 69 369 210 HOH HOH . F 3 HOH B 70 370 108 HOH HOH . F 3 HOH B 71 371 116 HOH HOH . F 3 HOH B 72 372 96 HOH HOH . F 3 HOH B 73 373 207 HOH HOH . F 3 HOH B 74 374 91 HOH HOH . F 3 HOH B 75 375 176 HOH HOH . F 3 HOH B 76 376 83 HOH HOH . F 3 HOH B 77 377 153 HOH HOH . F 3 HOH B 78 378 124 HOH HOH . F 3 HOH B 79 379 171 HOH HOH . F 3 HOH B 80 380 81 HOH HOH . F 3 HOH B 81 381 115 HOH HOH . F 3 HOH B 82 382 203 HOH HOH . F 3 HOH B 83 383 16 HOH HOH . F 3 HOH B 84 384 84 HOH HOH . F 3 HOH B 85 385 109 HOH HOH . F 3 HOH B 86 386 202 HOH HOH . F 3 HOH B 87 387 30 HOH HOH . F 3 HOH B 88 388 160 HOH HOH . F 3 HOH B 89 389 118 HOH HOH . F 3 HOH B 90 390 110 HOH HOH . F 3 HOH B 91 391 199 HOH HOH . F 3 HOH B 92 392 113 HOH HOH . F 3 HOH B 93 393 77 HOH HOH . F 3 HOH B 94 394 27 HOH HOH . F 3 HOH B 95 395 173 HOH HOH . F 3 HOH B 96 396 126 HOH HOH . F 3 HOH B 97 397 26 HOH HOH . F 3 HOH B 98 398 193 HOH HOH . F 3 HOH B 99 399 121 HOH HOH . F 3 HOH B 100 400 159 HOH HOH . F 3 HOH B 101 401 125 HOH HOH . F 3 HOH B 102 402 197 HOH HOH . F 3 HOH B 103 403 97 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAU 558 . . . C 2 -19.54 -63.234 136.583 1 25.7 ? CAU 558 201 A 1 HETATM 2 C CAT 558 . . . C 2 -20.337 -64.003 135.735 1 24.4 ? CAT 558 201 A 1 HETATM 3 C CAS 558 . . . C 2 -21.713 -64.03 135.94 1 28.7 ? CAS 558 201 A 1 HETATM 4 N NBA 558 . . . C 2 -22.411 -64.771 135.09 1 30.98 ? NBA 558 201 A 1 HETATM 5 N NAR 558 . . . C 2 -22.285 -63.371 136.981 1 27.73 ? NAR 558 201 A 1 HETATM 6 C CAQ 558 . . . C 2 -21.49 -62.598 137.882 1 25.96 ? CAQ 558 201 A 1 HETATM 7 C CAO 558 . . . C 2 -20.099 -62.536 137.682 1 22.24 ? CAO 558 201 A 1 HETATM 8 C CAM 558 . . . C 2 -19.225 -61.806 138.521 1 18.62 ? CAM 558 201 A 1 HETATM 9 C CAN 558 . . . C 2 -17.949 -61.475 138.027 1 16.91 ? CAN 558 201 A 1 HETATM 10 C CAC 558 . . . C 2 -17.035 -60.756 138.831 1 17.3 ? CAC 558 201 A 1 HETATM 11 C CAL 558 . . . C 2 -19.582 -61.465 139.828 1 18.72 ? CAL 558 201 A 1 HETATM 12 C CAK 558 . . . C 2 -18.679 -60.735 140.648 1 19.63 ? CAK 558 201 A 1 HETATM 13 C CAB 558 . . . C 2 -17.395 -60.374 140.138 1 17.55 ? CAB 558 201 A 1 HETATM 14 N NAA 558 . . . C 2 -16.498 -59.714 140.932 1 18.19 ? NAA 558 201 A 1 HETATM 15 C CAJ 558 . . . C 2 -16.55 -58.67 141.707 1 17.65 ? CAJ 558 201 A 1 HETATM 16 C CBC 558 . . . C 2 -17.87 -57.979 141.903 1 17.05 ? CBC 558 201 A 1 HETATM 17 N NAI 558 . . . C 2 -15.34 -58.414 142.286 1 17.11 ? NAI 558 201 A 1 HETATM 18 N NAH 558 . . . C 2 -14.568 -59.276 141.815 1 17.97 ? NAH 558 201 A 1 HETATM 19 C CAG 558 . . . C 2 -15.199 -60.067 140.99 1 18.14 ? CAG 558 201 A 1 HETATM 20 C CAF 558 . . . C 2 -14.629 -61.187 140.262 1 16.01 ? CAF 558 201 A 1 HETATM 21 C CBB 558 . . . C 2 -13.233 -61.589 140.831 1 15.36 ? CBB 558 201 A 1 HETATM 22 C CAE 558 . . . C 2 -14.514 -60.871 138.804 1 17.95 ? CAE 558 201 A 1 HETATM 23 N NAD 558 . . . C 2 -15.81 -60.416 138.259 1 16.43 ? NAD 558 201 A 1 HETATM 24 C CAP 558 . . . C 2 -15.769 -59.787 137.054 1 17.72 ? CAP 558 201 A 1 HETATM 25 C CAV 558 . . . C 2 -16.892 -59.103 136.517 1 16.39 ? CAV 558 201 A 1 HETATM 26 C CAW 558 . . . C 2 -16.809 -58.458 135.289 1 18.43 ? CAW 558 201 A 1 HETATM 27 C CAX 558 . . . C 2 -15.636 -58.474 134.533 1 17.49 ? CAX 558 201 A 1 HETATM 28 CL CLB 558 . . . C 2 -15.57 -57.674 132.983 1 23.09 ? CLB 558 201 A 1 HETATM 29 C CAY 558 . . . C 2 -14.551 -59.191 135.018 1 18.83 ? CAY 558 201 A 1 HETATM 30 C CAZ 558 . . . C 2 -14.583 -59.83 136.254 1 18.51 ? CAZ 558 201 A 1 # _model_server_stats.io_time_ms 27 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 300 _model_server_stats.encode_time_ms 12 _model_server_stats.element_count 30 #