data_4Z1Y # _model_server_result.job_id MpFfRLhbRymkp2vkl25PwA _model_server_result.datetime_utc '2024-11-15 18:35:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4z1y # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":502}' # _entry.id 4Z1Y # _exptl.entry_id 4Z1Y _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 186.057 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '2-PHOSPHOGLYCERIC ACID' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4Z1Y _cell.length_a 146.324 _cell.length_b 146.324 _cell.length_c 101.883 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4Z1Y _symmetry.cell_setting ? _symmetry.Int_Tables_number 79 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 243 A ASP 243 1_555 C MG MG . A MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? metalc ? metalc2 A OE1 GLU 286 A GLU 286 1_555 C MG MG . A MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.288 ? metalc ? metalc3 A OD2 ASP 313 A ASP 313 1_555 C MG MG . A MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? metalc ? metalc4 B OD2 ASP 243 B ASP 243 1_555 E MG MG . B MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.445 ? metalc ? metalc5 B OE1 GLU 286 B GLU 286 1_555 E MG MG . B MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? metalc ? metalc6 B OD2 ASP 313 B ASP 313 1_555 E MG MG . B MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.186 ? metalc ? metalc7 E MG MG . B MG 501 1_555 F O2 2PG . B 2PG 502 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.522 ? # _chem_comp.formula 'C3 H7 O7 P' _chem_comp.formula_weight 186.057 _chem_comp.id 2PG _chem_comp.mon_nstd_flag . _chem_comp.name '2-PHOSPHOGLYCERIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 2PG sing 1 n n C1 O1 2PG doub 2 n n C1 O2 2PG sing 3 n n C2 C3 2PG sing 4 n n C2 O1P 2PG sing 5 n n C2 H2 2PG sing 6 n n C3 O3 2PG sing 7 n n C3 H31 2PG sing 8 n n C3 H32 2PG sing 9 n n P O1P 2PG sing 10 n n P O2P 2PG doub 11 n n P O3P 2PG sing 12 n n P O4P 2PG sing 13 n n O2 HO2 2PG sing 14 n n O3 H3 2PG sing 15 n n O3P HOP3 2PG sing 16 n n O4P HOP4 2PG sing 17 n n # _atom_sites.entry_id 4Z1Y _atom_sites.fract_transf_matrix[1][1] 0.006834 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006834 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009815 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MG A 1 501 1 MG MG . D 3 2PG A 1 502 441 2PG 2PG . E 2 MG B 1 501 1 MG MG . F 3 2PG B 1 502 441 2PG 2PG . G 4 HOH A 1 601 2 HOH HOH . G 4 HOH A 2 602 21 HOH HOH . G 4 HOH A 3 603 13 HOH HOH . G 4 HOH A 4 604 22 HOH HOH . G 4 HOH A 5 605 16 HOH HOH . G 4 HOH A 6 606 8 HOH HOH . G 4 HOH A 7 607 11 HOH HOH . G 4 HOH A 8 608 12 HOH HOH . G 4 HOH A 9 609 23 HOH HOH . G 4 HOH A 10 610 18 HOH HOH . G 4 HOH A 11 611 26 HOH HOH . H 4 HOH B 1 601 3 HOH HOH . H 4 HOH B 2 602 25 HOH HOH . H 4 HOH B 3 603 15 HOH HOH . H 4 HOH B 4 604 20 HOH HOH . H 4 HOH B 5 605 17 HOH HOH . H 4 HOH B 6 606 5 HOH HOH . H 4 HOH B 7 607 19 HOH HOH . H 4 HOH B 8 608 7 HOH HOH . H 4 HOH B 9 609 4 HOH HOH . H 4 HOH B 10 610 14 HOH HOH . H 4 HOH B 11 611 10 HOH HOH . H 4 HOH B 12 612 24 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 2PG . B . F 3 27.12 -53.622 6.092 0.66 99.66 ? C1 2PG 502 B 1 HETATM 2 C C2 2PG . B . F 3 28.021 -52.573 6.696 0.66 100.03 ? C2 2PG 502 B 1 HETATM 3 C C3 2PG . B . F 3 28.202 -51.423 5.71 0.66 98.23 ? C3 2PG 502 B 1 HETATM 4 P P 2PG . B . F 3 28.377 -51.815 9.275 0.66 103.57 ? P 2PG 502 B 1 HETATM 5 O O1 2PG . B . F 3 27.616 -54.425 5.27 0.66 99.09 ? O1 2PG 502 B 1 HETATM 6 O O2 2PG . B . F 3 25.909 -53.664 6.412 0.66 99.38 ? O2 2PG 502 B 1 HETATM 7 O O3 2PG . B . F 3 29.596 -51.229 5.456 0.66 97.15 ? O3 2PG 502 B 1 HETATM 8 O O1P 2PG . B . F 3 27.5 -52.064 7.933 0.66 101.8 ? O1P 2PG 502 B 1 HETATM 9 O O2P 2PG . B . F 3 29.819 -51.685 8.846 0.66 102.96 ? O2P 2PG 502 B 1 HETATM 10 O O3P 2PG . B . F 3 27.815 -50.532 9.845 0.66 104.36 ? O3P 2PG 502 B 1 HETATM 11 O O4P 2PG . B . F 3 28.091 -53.032 10.123 0.66 104.07 ? O4P 2PG 502 B 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 31 _model_server_stats.query_time_ms 268 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 11 #