data_4Z23 # _model_server_result.job_id umo_HhReMwwGrJulgt1Xiw _model_server_result.datetime_utc '2025-03-27 18:37:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4z23 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":403}' # _entry.id 4Z23 # _exptl.entry_id 4Z23 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 2 _entity.src_method nat _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4Z23 _cell.length_a 34.08 _cell.length_b 206.21 _cell.length_c 121.42 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4Z23 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A NZ LYS 3 A LYS 3 1_555 A CG ASN 150 A ASN 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.264 ? covale ? covale2 A NZ LYS 177 A LYS 177 1_555 A CG ASN 308 A ASN 308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.267 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 70 n n C1 C2 EDO sing 71 n n C1 H11 EDO sing 72 n n C1 H12 EDO sing 73 n n O1 HO1 EDO sing 74 n n C2 O2 EDO sing 75 n n C2 H21 EDO sing 76 n n C2 H22 EDO sing 77 n n O2 HO2 EDO sing 78 n n # _atom_sites.entry_id 4Z23 _atom_sites.fract_transf_matrix[1][1] 0.029343 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004849 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008236 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EDO A 1 401 1 EDO EDO . C 2 EDO A 1 402 2 EDO EDO . D 2 EDO A 1 403 3 EDO EDO . E 2 EDO A 1 404 4 EDO EDO . F 2 EDO A 1 405 5 EDO EDO . G 3 HOH A 1 501 203 HOH HOH . G 3 HOH A 2 502 206 HOH HOH . G 3 HOH A 3 503 138 HOH HOH . G 3 HOH A 4 504 204 HOH HOH . G 3 HOH A 5 505 129 HOH HOH . G 3 HOH A 6 506 24 HOH HOH . G 3 HOH A 7 507 136 HOH HOH . G 3 HOH A 8 508 205 HOH HOH . G 3 HOH A 9 509 142 HOH HOH . G 3 HOH A 10 510 130 HOH HOH . G 3 HOH A 11 511 128 HOH HOH . G 3 HOH A 12 512 123 HOH HOH . G 3 HOH A 13 513 16 HOH HOH . G 3 HOH A 14 514 5 HOH HOH . G 3 HOH A 15 515 150 HOH HOH . G 3 HOH A 16 516 3 HOH HOH . G 3 HOH A 17 517 21 HOH HOH . G 3 HOH A 18 518 146 HOH HOH . G 3 HOH A 19 519 140 HOH HOH . G 3 HOH A 20 520 145 HOH HOH . G 3 HOH A 21 521 111 HOH HOH . G 3 HOH A 22 522 141 HOH HOH . G 3 HOH A 23 523 151 HOH HOH . G 3 HOH A 24 524 36 HOH HOH . G 3 HOH A 25 525 10 HOH HOH . G 3 HOH A 26 526 147 HOH HOH . G 3 HOH A 27 527 181 HOH HOH . G 3 HOH A 28 528 4 HOH HOH . G 3 HOH A 29 529 139 HOH HOH . G 3 HOH A 30 530 6 HOH HOH . G 3 HOH A 31 531 50 HOH HOH . G 3 HOH A 32 532 143 HOH HOH . G 3 HOH A 33 533 8 HOH HOH . G 3 HOH A 34 534 19 HOH HOH . G 3 HOH A 35 535 28 HOH HOH . G 3 HOH A 36 536 82 HOH HOH . G 3 HOH A 37 537 22 HOH HOH . G 3 HOH A 38 538 14 HOH HOH . G 3 HOH A 39 539 94 HOH HOH . G 3 HOH A 40 540 144 HOH HOH . G 3 HOH A 41 541 47 HOH HOH . G 3 HOH A 42 542 20 HOH HOH . G 3 HOH A 43 543 202 HOH HOH . G 3 HOH A 44 544 73 HOH HOH . G 3 HOH A 45 545 44 HOH HOH . G 3 HOH A 46 546 15 HOH HOH . G 3 HOH A 47 547 32 HOH HOH . G 3 HOH A 48 548 17 HOH HOH . G 3 HOH A 49 549 104 HOH HOH . G 3 HOH A 50 550 164 HOH HOH . G 3 HOH A 51 551 124 HOH HOH . G 3 HOH A 52 552 91 HOH HOH . G 3 HOH A 53 553 133 HOH HOH . G 3 HOH A 54 554 132 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . D 2 -6.541 -17.382 3 1 106 ? C1 EDO 403 A 1 HETATM 2 O O1 EDO . . . D 2 -7.647 -16.511 3.264 1 100.55 ? O1 EDO 403 A 1 HETATM 3 C C2 EDO . . . D 2 -6.726 -18.725 3.71 1 101.84 ? C2 EDO 403 A 1 HETATM 4 O O2 EDO . . . D 2 -6.458 -19.846 2.845 1 100.11 ? O2 EDO 403 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 263 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #