data_4Z25
#
_model_server_result.job_id            31tirShTLA86l8ze7F023A 
_model_server_result.datetime_utc      '2025-09-19 08:29:10' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4z25 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"V","auth_seq_id":901}' 
#
_entry.id    4Z25 
#
_exptl.entry_id    4Z25 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              785.55 
_entity.id                          2 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            'FLAVIN-ADENINE DINUCLEOTIDE' 
_entity.pdbx_number_of_molecules    12 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          103.56 
_cell.angle_gamma         90 
_cell.entry_id            4Z25 
_cell.length_a            169.974 
_cell.length_b            154.937 
_cell.length_c            197.391 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4Z25 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
PISA dimeric 2 author_and_software_defined_assembly 3 
PISA dimeric 2 author_and_software_defined_assembly 4 
PISA dimeric 2 author_and_software_defined_assembly 5 
PISA dimeric 2 author_and_software_defined_assembly 6 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,M,O 1 1 
B,D,N,P 2 1 
E,I,Q,U 3 1 
F,J,R,V 4 1 
G,K,S,W 5 1 
H,T 6 1 
L,X 6 2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_454 -x-1,y+1/2,-z-1 -1 0 0 0 1 0 0 0 -1 -123.693015 77.4685 -191.888711 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 M N N 
? 2 N N N 
? 2 O N N 
? 2 P N N 
? 2 Q N N 
? 2 R N N 
? 2 S N N 
? 2 T N N 
? 2 U N N 
? 2 V N N 
? 2 W N N 
? 2 X N N 
#
_chem_comp.formula           'C27 H33 N9 O15 P2' 
_chem_comp.formula_weight    785.55 
_chem_comp.id                FAD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'FLAVIN-ADENINE DINUCLEOTIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A FAD doub 83 n n 
PA O2A FAD sing 84 n n 
PA O5B FAD sing 85 n n 
PA O3P FAD sing 86 n n 
O2A HOA2 FAD sing 87 n n 
O5B C5B FAD sing 88 n n 
C5B C4B FAD sing 89 n n 
C5B H51A FAD sing 90 n n 
C5B H52A FAD sing 91 n n 
C4B O4B FAD sing 92 n n 
C4B C3B FAD sing 93 n n 
C4B H4B FAD sing 94 n n 
O4B C1B FAD sing 95 n n 
C3B O3B FAD sing 96 n n 
C3B C2B FAD sing 97 n n 
C3B H3B FAD sing 98 n n 
O3B HO3A FAD sing 99 n n 
C2B O2B FAD sing 100 n n 
C2B C1B FAD sing 101 n n 
C2B H2B FAD sing 102 n n 
O2B HO2A FAD sing 103 n n 
C1B N9A FAD sing 104 n n 
C1B H1B FAD sing 105 n n 
N9A C8A FAD sing 106 n y 
N9A C4A FAD sing 107 n y 
C8A N7A FAD doub 108 n y 
C8A H8A FAD sing 109 n n 
N7A C5A FAD sing 110 n y 
C5A C6A FAD sing 111 n y 
C5A C4A FAD doub 112 n y 
C6A N6A FAD sing 113 n n 
C6A N1A FAD doub 114 n y 
N6A H61A FAD sing 115 n n 
N6A H62A FAD sing 116 n n 
N1A C2A FAD sing 117 n y 
C2A N3A FAD doub 118 n y 
C2A H2A FAD sing 119 n n 
N3A C4A FAD sing 120 n y 
N1 C2 FAD sing 121 n n 
N1 C10 FAD doub 122 n n 
C2 O2 FAD doub 123 n n 
C2 N3 FAD sing 124 n n 
N3 C4 FAD sing 125 n n 
N3 HN3 FAD sing 126 n n 
C4 O4 FAD doub 127 n n 
C4 C4X FAD sing 128 n n 
C4X N5 FAD doub 129 n n 
C4X C10 FAD sing 130 n n 
N5 C5X FAD sing 131 n n 
C5X C6 FAD doub 132 n y 
C5X C9A FAD sing 133 n y 
C6 C7 FAD sing 134 n y 
C6 H6 FAD sing 135 n n 
C7 C7M FAD sing 136 n n 
C7 C8 FAD doub 137 n y 
C7M HM71 FAD sing 138 n n 
C7M HM72 FAD sing 139 n n 
C7M HM73 FAD sing 140 n n 
C8 C8M FAD sing 141 n n 
C8 C9 FAD sing 142 n y 
C8M HM81 FAD sing 143 n n 
C8M HM82 FAD sing 144 n n 
C8M HM83 FAD sing 145 n n 
C9 C9A FAD doub 146 n y 
C9 H9 FAD sing 147 n n 
C9A N10 FAD sing 148 n n 
N10 C10 FAD sing 149 n n 
N10 C1' FAD sing 150 n n 
C1' C2' FAD sing 151 n n 
C1' "H1'1" FAD sing 152 n n 
C1' "H1'2" FAD sing 153 n n 
C2' O2' FAD sing 154 n n 
C2' C3' FAD sing 155 n n 
C2' H2' FAD sing 156 n n 
O2' HO2' FAD sing 157 n n 
C3' O3' FAD sing 158 n n 
C3' C4' FAD sing 159 n n 
C3' H3' FAD sing 160 n n 
O3' HO3' FAD sing 161 n n 
C4' O4' FAD sing 162 n n 
C4' C5' FAD sing 163 n n 
C4' H4' FAD sing 164 n n 
O4' HO4' FAD sing 165 n n 
C5' O5' FAD sing 166 n n 
C5' "H5'1" FAD sing 167 n n 
C5' "H5'2" FAD sing 168 n n 
O5' P FAD sing 169 n n 
P O1P FAD doub 170 n n 
P O2P FAD sing 171 n n 
P O3P FAD sing 172 n n 
O2P HOP2 FAD sing 173 n n 
#
_atom_sites.entry_id                     4Z25 
_atom_sites.fract_transf_matrix[1][1]    0.005883 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.00142 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006454 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005211 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
M 2 FAD A 1 901 901 FAD FAD . 
N 2 FAD B 1 901 901 FAD FAD . 
O 2 FAD C 1 901 901 FAD FAD . 
P 2 FAD D 1 901 901 FAD FAD . 
Q 2 FAD E 1 901 901 FAD FAD . 
R 2 FAD F 1 901 901 FAD FAD . 
S 2 FAD G 1 901 901 FAD FAD . 
T 2 FAD H 1 901 901 FAD FAD . 
U 2 FAD I 1 901 901 FAD FAD . 
V 2 FAD J 1 901 901 FAD FAD . 
W 2 FAD K 1 901 901 FAD FAD . 
X 2 FAD L 1 901 901 FAD FAD . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA FAD . . . V 2 21.791 27.304 -64.022 1 17.46 ? PA FAD 901 J 1 
HETATM 2 O O1A FAD . . . V 2 20.84 27.903 -64.979 1 17.46 ? O1A FAD 901 J 1 
HETATM 3 O O2A FAD . . . V 2 22.136 28.464 -63.167 1 17.46 ? O2A FAD 901 J 1 
HETATM 4 O O5B FAD . . . V 2 21.221 26.11 -63.112 1 17.46 ? O5B FAD 901 J 1 
HETATM 5 C C5B FAD . . . V 2 21.712 26.026 -61.766 1 17.46 ? C5B FAD 901 J 1 
HETATM 6 C C4B FAD . . . V 2 20.703 25.408 -60.844 1 17.46 ? C4B FAD 901 J 1 
HETATM 7 O O4B FAD . . . V 2 21.336 24.461 -59.959 1 17.46 ? O4B FAD 901 J 1 
HETATM 8 C C3B FAD . . . V 2 20.089 26.449 -59.95 1 17.46 ? C3B FAD 901 J 1 
HETATM 9 O O3B FAD . . . V 2 18.664 26.343 -59.929 1 17.46 ? O3B FAD 901 J 1 
HETATM 10 C C2B FAD . . . V 2 20.718 26.23 -58.631 1 17.46 ? C2B FAD 901 J 1 
HETATM 11 O O2B FAD . . . V 2 19.856 26.57 -57.531 1 17.46 ? O2B FAD 901 J 1 
HETATM 12 C C1B FAD . . . V 2 20.989 24.789 -58.596 1 17.46 ? C1B FAD 901 J 1 
HETATM 13 N N9A FAD . . . V 2 21.981 24.455 -57.643 1 17.46 ? N9A FAD 901 J 1 
HETATM 14 C C8A FAD . . . V 2 23.247 24.942 -57.508 1 17.46 ? C8A FAD 901 J 1 
HETATM 15 N N7A FAD . . . V 2 23.882 24.354 -56.457 1 17.46 ? N7A FAD 901 J 1 
HETATM 16 C C5A FAD . . . V 2 22.969 23.437 -55.891 1 17.46 ? C5A FAD 901 J 1 
HETATM 17 C C6A FAD . . . V 2 23.033 22.511 -54.755 1 17.46 ? C6A FAD 901 J 1 
HETATM 18 N N6A FAD . . . V 2 24.267 22.5 -54.035 1 17.46 ? N6A FAD 901 J 1 
HETATM 19 N N1A FAD . . . V 2 21.952 21.734 -54.44 1 17.46 ? N1A FAD 901 J 1 
HETATM 20 C C2A FAD . . . V 2 20.82 21.823 -55.164 1 17.46 ? C2A FAD 901 J 1 
HETATM 21 N N3A FAD . . . V 2 20.697 22.665 -56.231 1 17.46 ? N3A FAD 901 J 1 
HETATM 22 C C4A FAD . . . V 2 21.766 23.487 -56.618 1 17.46 ? C4A FAD 901 J 1 
HETATM 23 N N1 FAD . . . V 2 21.639 33.753 -70.854 1 17.46 ? N1 FAD 901 J 1 
HETATM 24 C C2 FAD . . . V 2 21.277 34.147 -72.078 1 17.46 ? C2 FAD 901 J 1 
HETATM 25 O O2 FAD . . . V 2 21.262 33.186 -73.179 1 17.46 ? O2 FAD 901 J 1 
HETATM 26 N N3 FAD . . . V 2 20.941 35.42 -72.309 1 17.46 ? N3 FAD 901 J 1 
HETATM 27 C C4 FAD . . . V 2 20.952 36.336 -71.311 1 17.46 ? C4 FAD 901 J 1 
HETATM 28 O O4 FAD . . . V 2 20.62 37.651 -71.586 1 17.46 ? O4 FAD 901 J 1 
HETATM 29 C C4X FAD . . . V 2 21.344 35.958 -69.955 1 17.46 ? C4X FAD 901 J 1 
HETATM 30 N N5 FAD . . . V 2 21.746 36.943 -69.044 1 17.46 ? N5 FAD 901 J 1 
HETATM 31 C C5X FAD . . . V 2 22.237 36.575 -67.79 1 17.46 ? C5X FAD 901 J 1 
HETATM 32 C C6 FAD . . . V 2 22.017 37.511 -66.704 1 17.46 ? C6 FAD 901 J 1 
HETATM 33 C C7 FAD . . . V 2 21.94 37.062 -65.363 1 17.46 ? C7 FAD 901 J 1 
HETATM 34 C C7M FAD . . . V 2 21.693 38.072 -64.242 1 17.46 ? C7M FAD 901 J 1 
HETATM 35 C C8 FAD . . . V 2 22.081 35.69 -65.098 1 17.46 ? C8 FAD 901 J 1 
HETATM 36 C C8M FAD . . . V 2 21.993 35.12 -63.637 1 17.46 ? C8M FAD 901 J 1 
HETATM 37 C C9 FAD . . . V 2 22.314 34.77 -66.157 1 17.46 ? C9 FAD 901 J 1 
HETATM 38 C C9A FAD . . . V 2 22.394 35.224 -67.52 1 17.46 ? C9A FAD 901 J 1 
HETATM 39 N N10 FAD . . . V 2 22.28 34.241 -68.537 1 17.46 ? N10 FAD 901 J 1 
HETATM 40 C C10 FAD . . . V 2 21.69 34.614 -69.745 1 17.46 ? C10 FAD 901 J 1 
HETATM 41 C C1' FAD . . . V 2 23.1 33.052 -68.431 1 17.46 ? C1' FAD 901 J 1 
HETATM 42 C C2' FAD . . . V 2 22.315 31.707 -68.508 1 17.46 ? C2' FAD 901 J 1 
HETATM 43 O O2' FAD . . . V 2 21.071 31.935 -67.942 1 17.46 ? O2' FAD 901 J 1 
HETATM 44 C C3' FAD . . . V 2 23.043 30.554 -67.806 1 17.46 ? C3' FAD 901 J 1 
HETATM 45 O O3' FAD . . . V 2 24.319 30.338 -68.329 1 17.46 ? O3' FAD 901 J 1 
HETATM 46 C C4' FAD . . . V 2 22.285 29.219 -67.936 1 17.46 ? C4' FAD 901 J 1 
HETATM 47 O O4' FAD . . . V 2 21.188 29.182 -67.098 1 17.46 ? O4' FAD 901 J 1 
HETATM 48 C C5' FAD . . . V 2 23.215 28.07 -67.527 1 17.46 ? C5' FAD 901 J 1 
HETATM 49 O O5' FAD . . . V 2 22.382 26.928 -67.295 1 17.46 ? O5' FAD 901 J 1 
HETATM 50 P P FAD . . . V 2 22.858 25.927 -66.146 1 17.46 ? P FAD 901 J 1 
HETATM 51 O O1P FAD . . . V 2 21.949 24.736 -65.952 1 17.46 ? O1P FAD 901 J 1 
HETATM 52 O O2P FAD . . . V 2 24.196 25.326 -66.449 1 17.46 ? O2P FAD 901 J 1 
HETATM 53 O O3P FAD . . . V 2 23.028 26.767 -64.821 1 17.46 ? O3P FAD 901 J 1 
#
_model_server_stats.io_time_ms              28 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    38 
_model_server_stats.query_time_ms           243 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           53 
#