data_4Z2F
#
_model_server_result.job_id            TjpTJrNMDjc35YhyAWLdOA 
_model_server_result.datetime_utc      '2024-12-26 18:21:17' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4z2f 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":201}' 
#
_entry.id    4Z2F 
#
_exptl.entry_id    4Z2F 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              118.174 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (4S)-2-METHYL-2,4-PENTANEDIOL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4Z2F 
_cell.length_a            100.184 
_cell.length_b            100.184 
_cell.length_c            63.734 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4Z2F 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        94 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 42 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C6 H14 O2' 
_chem_comp.formula_weight    118.174 
_chem_comp.id                MPD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (4S)-2-METHYL-2,4-PENTANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 MPD sing 237 n n 
C1 H11 MPD sing 238 n n 
C1 H12 MPD sing 239 n n 
C1 H13 MPD sing 240 n n 
C2 O2 MPD sing 241 n n 
C2 CM MPD sing 242 n n 
C2 C3 MPD sing 243 n n 
O2 HO2 MPD sing 244 n n 
CM HM1 MPD sing 245 n n 
CM HM2 MPD sing 246 n n 
CM HM3 MPD sing 247 n n 
C3 C4 MPD sing 248 n n 
C3 H31 MPD sing 249 n n 
C3 H32 MPD sing 250 n n 
C4 O4 MPD sing 251 n n 
C4 C5 MPD sing 252 n n 
C4 H4 MPD sing 253 n n 
O4 HO4 MPD sing 254 n n 
C5 H51 MPD sing 255 n n 
C5 H52 MPD sing 256 n n 
C5 H53 MPD sing 257 n n 
#
_atom_sites.entry_id                     4Z2F 
_atom_sites.fract_transf_matrix[1][1]    0.009982 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009982 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.01569 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 MPD B 1 201 1 MPD MPD . 
D 3 HOH A 1 201 236 HOH HOH . 
D 3 HOH A 2 202 48 HOH HOH . 
D 3 HOH A 3 203 54 HOH HOH . 
D 3 HOH A 4 204 8 HOH HOH . 
D 3 HOH A 5 205 39 HOH HOH . 
D 3 HOH A 6 206 51 HOH HOH . 
D 3 HOH A 7 207 61 HOH HOH . 
D 3 HOH A 8 208 66 HOH HOH . 
D 3 HOH A 9 209 139 HOH HOH . 
D 3 HOH A 10 210 9 HOH HOH . 
D 3 HOH A 11 211 19 HOH HOH . 
D 3 HOH A 12 212 16 HOH HOH . 
D 3 HOH A 13 213 75 HOH HOH . 
D 3 HOH A 14 214 198 HOH HOH . 
D 3 HOH A 15 215 154 HOH HOH . 
D 3 HOH A 16 216 168 HOH HOH . 
D 3 HOH A 17 217 172 HOH HOH . 
D 3 HOH A 18 218 171 HOH HOH . 
D 3 HOH A 19 219 251 HOH HOH . 
D 3 HOH A 20 220 183 HOH HOH . 
D 3 HOH A 21 221 194 HOH HOH . 
D 3 HOH A 22 222 174 HOH HOH . 
D 3 HOH A 23 223 20 HOH HOH . 
D 3 HOH A 24 224 138 HOH HOH . 
D 3 HOH A 25 225 14 HOH HOH . 
D 3 HOH A 26 226 58 HOH HOH . 
D 3 HOH A 27 227 64 HOH HOH . 
D 3 HOH A 28 228 237 HOH HOH . 
D 3 HOH A 29 229 181 HOH HOH . 
D 3 HOH A 30 230 59 HOH HOH . 
D 3 HOH A 31 231 63 HOH HOH . 
D 3 HOH A 32 232 185 HOH HOH . 
D 3 HOH A 33 233 197 HOH HOH . 
D 3 HOH A 34 234 136 HOH HOH . 
D 3 HOH A 35 235 195 HOH HOH . 
D 3 HOH A 36 236 44 HOH HOH . 
D 3 HOH A 37 237 223 HOH HOH . 
D 3 HOH A 38 238 69 HOH HOH . 
D 3 HOH A 39 239 238 HOH HOH . 
D 3 HOH A 40 240 13 HOH HOH . 
D 3 HOH A 41 241 25 HOH HOH . 
D 3 HOH A 42 242 184 HOH HOH . 
D 3 HOH A 43 243 50 HOH HOH . 
D 3 HOH A 44 244 193 HOH HOH . 
D 3 HOH A 45 245 53 HOH HOH . 
D 3 HOH A 46 246 76 HOH HOH . 
D 3 HOH A 47 247 131 HOH HOH . 
D 3 HOH A 48 248 199 HOH HOH . 
D 3 HOH A 49 249 49 HOH HOH . 
D 3 HOH A 50 250 200 HOH HOH . 
D 3 HOH A 51 251 231 HOH HOH . 
D 3 HOH A 52 252 41 HOH HOH . 
D 3 HOH A 53 253 23 HOH HOH . 
D 3 HOH A 54 254 68 HOH HOH . 
D 3 HOH A 55 255 11 HOH HOH . 
D 3 HOH A 56 256 85 HOH HOH . 
D 3 HOH A 57 257 18 HOH HOH . 
D 3 HOH A 58 258 196 HOH HOH . 
D 3 HOH A 59 259 10 HOH HOH . 
D 3 HOH A 60 260 190 HOH HOH . 
D 3 HOH A 61 261 186 HOH HOH . 
D 3 HOH A 62 262 17 HOH HOH . 
D 3 HOH A 63 263 214 HOH HOH . 
D 3 HOH A 64 264 191 HOH HOH . 
D 3 HOH A 65 265 187 HOH HOH . 
D 3 HOH A 66 266 189 HOH HOH . 
D 3 HOH A 67 267 250 HOH HOH . 
D 3 HOH A 68 268 227 HOH HOH . 
D 3 HOH A 69 269 182 HOH HOH . 
D 3 HOH A 70 270 7 HOH HOH . 
D 3 HOH A 71 271 62 HOH HOH . 
D 3 HOH A 72 272 21 HOH HOH . 
D 3 HOH A 73 273 137 HOH HOH . 
D 3 HOH A 74 274 169 HOH HOH . 
D 3 HOH A 75 275 38 HOH HOH . 
D 3 HOH A 76 276 42 HOH HOH . 
D 3 HOH A 77 277 46 HOH HOH . 
D 3 HOH A 78 278 78 HOH HOH . 
D 3 HOH A 79 279 65 HOH HOH . 
D 3 HOH A 80 280 97 HOH HOH . 
D 3 HOH A 81 281 47 HOH HOH . 
D 3 HOH A 82 282 22 HOH HOH . 
D 3 HOH A 83 283 71 HOH HOH . 
D 3 HOH A 84 284 188 HOH HOH . 
D 3 HOH A 85 285 12 HOH HOH . 
D 3 HOH A 86 286 45 HOH HOH . 
D 3 HOH A 87 287 73 HOH HOH . 
D 3 HOH A 88 288 4 HOH HOH . 
D 3 HOH A 89 289 6 HOH HOH . 
D 3 HOH A 90 290 29 HOH HOH . 
D 3 HOH A 91 291 2 HOH HOH . 
D 3 HOH A 92 292 235 HOH HOH . 
D 3 HOH A 93 293 27 HOH HOH . 
D 3 HOH A 94 294 215 HOH HOH . 
D 3 HOH A 95 295 40 HOH HOH . 
D 3 HOH A 96 296 57 HOH HOH . 
D 3 HOH A 97 297 67 HOH HOH . 
D 3 HOH A 98 298 242 HOH HOH . 
D 3 HOH A 99 299 232 HOH HOH . 
D 3 HOH A 100 300 212 HOH HOH . 
D 3 HOH A 101 301 60 HOH HOH . 
D 3 HOH A 102 302 210 HOH HOH . 
D 3 HOH A 103 303 52 HOH HOH . 
D 3 HOH A 104 304 72 HOH HOH . 
D 3 HOH A 105 305 243 HOH HOH . 
D 3 HOH A 106 306 26 HOH HOH . 
D 3 HOH A 107 307 125 HOH HOH . 
D 3 HOH A 108 308 132 HOH HOH . 
D 3 HOH A 109 309 74 HOH HOH . 
D 3 HOH A 110 310 248 HOH HOH . 
D 3 HOH A 111 311 247 HOH HOH . 
D 3 HOH A 112 312 201 HOH HOH . 
D 3 HOH A 113 313 88 HOH HOH . 
D 3 HOH A 114 314 216 HOH HOH . 
D 3 HOH A 115 315 3 HOH HOH . 
D 3 HOH A 116 316 15 HOH HOH . 
D 3 HOH A 117 317 28 HOH HOH . 
D 3 HOH A 118 318 77 HOH HOH . 
D 3 HOH A 119 319 5 HOH HOH . 
D 3 HOH A 120 320 43 HOH HOH . 
D 3 HOH A 121 321 192 HOH HOH . 
D 3 HOH A 122 322 55 HOH HOH . 
E 3 HOH B 1 301 175 HOH HOH . 
E 3 HOH B 2 302 89 HOH HOH . 
E 3 HOH B 3 303 118 HOH HOH . 
E 3 HOH B 4 304 35 HOH HOH . 
E 3 HOH B 5 305 211 HOH HOH . 
E 3 HOH B 6 306 140 HOH HOH . 
E 3 HOH B 7 307 246 HOH HOH . 
E 3 HOH B 8 308 104 HOH HOH . 
E 3 HOH B 9 309 165 HOH HOH . 
E 3 HOH B 10 310 119 HOH HOH . 
E 3 HOH B 11 311 95 HOH HOH . 
E 3 HOH B 12 312 157 HOH HOH . 
E 3 HOH B 13 313 90 HOH HOH . 
E 3 HOH B 14 314 180 HOH HOH . 
E 3 HOH B 15 315 103 HOH HOH . 
E 3 HOH B 16 316 162 HOH HOH . 
E 3 HOH B 17 317 142 HOH HOH . 
E 3 HOH B 18 318 128 HOH HOH . 
E 3 HOH B 19 319 111 HOH HOH . 
E 3 HOH B 20 320 166 HOH HOH . 
E 3 HOH B 21 321 160 HOH HOH . 
E 3 HOH B 22 322 241 HOH HOH . 
E 3 HOH B 23 323 98 HOH HOH . 
E 3 HOH B 24 324 150 HOH HOH . 
E 3 HOH B 25 325 170 HOH HOH . 
E 3 HOH B 26 326 82 HOH HOH . 
E 3 HOH B 27 327 204 HOH HOH . 
E 3 HOH B 28 328 141 HOH HOH . 
E 3 HOH B 29 329 202 HOH HOH . 
E 3 HOH B 30 330 230 HOH HOH . 
E 3 HOH B 31 331 70 HOH HOH . 
E 3 HOH B 32 332 92 HOH HOH . 
E 3 HOH B 33 333 159 HOH HOH . 
E 3 HOH B 34 334 143 HOH HOH . 
E 3 HOH B 35 335 205 HOH HOH . 
E 3 HOH B 36 336 152 HOH HOH . 
E 3 HOH B 37 337 36 HOH HOH . 
E 3 HOH B 38 338 133 HOH HOH . 
E 3 HOH B 39 339 105 HOH HOH . 
E 3 HOH B 40 340 176 HOH HOH . 
E 3 HOH B 41 341 148 HOH HOH . 
E 3 HOH B 42 342 113 HOH HOH . 
E 3 HOH B 43 343 87 HOH HOH . 
E 3 HOH B 44 344 134 HOH HOH . 
E 3 HOH B 45 345 179 HOH HOH . 
E 3 HOH B 46 346 218 HOH HOH . 
E 3 HOH B 47 347 209 HOH HOH . 
E 3 HOH B 48 348 151 HOH HOH . 
E 3 HOH B 49 349 31 HOH HOH . 
E 3 HOH B 50 350 127 HOH HOH . 
E 3 HOH B 51 351 149 HOH HOH . 
E 3 HOH B 52 352 81 HOH HOH . 
E 3 HOH B 53 353 24 HOH HOH . 
E 3 HOH B 54 354 203 HOH HOH . 
E 3 HOH B 55 355 155 HOH HOH . 
E 3 HOH B 56 356 93 HOH HOH . 
E 3 HOH B 57 357 86 HOH HOH . 
E 3 HOH B 58 358 106 HOH HOH . 
E 3 HOH B 59 359 224 HOH HOH . 
E 3 HOH B 60 360 158 HOH HOH . 
E 3 HOH B 61 361 221 HOH HOH . 
E 3 HOH B 62 362 96 HOH HOH . 
E 3 HOH B 63 363 167 HOH HOH . 
E 3 HOH B 64 364 1 HOH HOH . 
E 3 HOH B 65 365 102 HOH HOH . 
E 3 HOH B 66 366 121 HOH HOH . 
E 3 HOH B 67 367 101 HOH HOH . 
E 3 HOH B 68 368 109 HOH HOH . 
E 3 HOH B 69 369 249 HOH HOH . 
E 3 HOH B 70 370 161 HOH HOH . 
E 3 HOH B 71 371 115 HOH HOH . 
E 3 HOH B 72 372 80 HOH HOH . 
E 3 HOH B 73 373 100 HOH HOH . 
E 3 HOH B 74 374 144 HOH HOH . 
E 3 HOH B 75 375 220 HOH HOH . 
E 3 HOH B 76 376 33 HOH HOH . 
E 3 HOH B 77 377 99 HOH HOH . 
E 3 HOH B 78 378 156 HOH HOH . 
E 3 HOH B 79 379 217 HOH HOH . 
E 3 HOH B 80 380 226 HOH HOH . 
E 3 HOH B 81 381 222 HOH HOH . 
E 3 HOH B 82 382 145 HOH HOH . 
E 3 HOH B 83 383 206 HOH HOH . 
E 3 HOH B 84 384 233 HOH HOH . 
E 3 HOH B 85 385 163 HOH HOH . 
E 3 HOH B 86 386 83 HOH HOH . 
E 3 HOH B 87 387 177 HOH HOH . 
E 3 HOH B 88 388 146 HOH HOH . 
E 3 HOH B 89 389 219 HOH HOH . 
E 3 HOH B 90 390 108 HOH HOH . 
E 3 HOH B 91 391 208 HOH HOH . 
E 3 HOH B 92 392 244 HOH HOH . 
E 3 HOH B 93 393 129 HOH HOH . 
E 3 HOH B 94 394 153 HOH HOH . 
E 3 HOH B 95 395 147 HOH HOH . 
E 3 HOH B 96 396 234 HOH HOH . 
E 3 HOH B 97 397 245 HOH HOH . 
E 3 HOH B 98 398 94 HOH HOH . 
E 3 HOH B 99 399 173 HOH HOH . 
E 3 HOH B 100 400 123 HOH HOH . 
E 3 HOH B 101 401 207 HOH HOH . 
E 3 HOH B 102 402 126 HOH HOH . 
E 3 HOH B 103 403 32 HOH HOH . 
E 3 HOH B 104 404 120 HOH HOH . 
E 3 HOH B 105 405 117 HOH HOH . 
E 3 HOH B 106 406 30 HOH HOH . 
E 3 HOH B 107 407 213 HOH HOH . 
E 3 HOH B 108 408 240 HOH HOH . 
E 3 HOH B 109 409 91 HOH HOH . 
E 3 HOH B 110 410 37 HOH HOH . 
E 3 HOH B 111 411 107 HOH HOH . 
E 3 HOH B 112 412 124 HOH HOH . 
E 3 HOH B 113 413 114 HOH HOH . 
E 3 HOH B 114 414 225 HOH HOH . 
E 3 HOH B 115 415 79 HOH HOH . 
E 3 HOH B 116 416 239 HOH HOH . 
E 3 HOH B 117 417 112 HOH HOH . 
E 3 HOH B 118 418 84 HOH HOH . 
E 3 HOH B 119 419 228 HOH HOH . 
E 3 HOH B 120 420 135 HOH HOH . 
E 3 HOH B 121 421 122 HOH HOH . 
E 3 HOH B 122 422 56 HOH HOH . 
E 3 HOH B 123 423 110 HOH HOH . 
E 3 HOH B 124 424 164 HOH HOH . 
E 3 HOH B 125 425 34 HOH HOH . 
E 3 HOH B 126 426 116 HOH HOH . 
E 3 HOH B 127 427 178 HOH HOH . 
E 3 HOH B 128 428 229 HOH HOH . 
E 3 HOH B 129 429 130 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 MPD . . . C 2 45.908 17.814 11.313 1 39.99 ? C1 MPD 201 B 1 
HETATM 2 C C2 MPD . . . C 2 47.018 18.557 10.586 1 30.72 ? C2 MPD 201 B 1 
HETATM 3 O O2 MPD . . . C 2 48.299 17.993 10.962 1 61.59 ? O2 MPD 201 B 1 
HETATM 4 C CM MPD . . . C 2 46.861 18.355 9.085 1 24.32 ? CM MPD 201 B 1 
HETATM 5 C C3 MPD . . . C 2 47.006 20.054 10.897 1 23.88 ? C3 MPD 201 B 1 
HETATM 6 C C4 MPD . . . C 2 46.103 20.458 12.06 1 36.26 ? C4 MPD 201 B 1 
HETATM 7 O O4 MPD . . . C 2 46.799 20.349 13.283 1 40.1 ? O4 MPD 201 B 1 
HETATM 8 C C5 MPD . . . C 2 45.633 21.897 11.867 1 19.38 ? C5 MPD 201 B 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    15 
_model_server_stats.query_time_ms           274 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           8 
#