data_4Z2G # _model_server_result.job_id QBIfsqXddH6juaS5FT4wEg _model_server_result.datetime_utc '2025-01-10 14:28:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4z2g # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 4Z2G # _exptl.entry_id 4Z2G _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 711.886 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "(1R,2R,3R,6R,7S,8S,9R,10R,12R,13S,17S)-3-ethyl-2,10-dihydroxy-2,6,8,10,12,15,15,17-octamethyl-5-oxo-9-(prop-2-yn-1-yloxy)-4,14,16-trioxabicyclo[11.3.1]heptadec-7-yl {4-[N'-(methylcarbamoyl)carbamimidamido]butyl}carbamate" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4Z2G _cell.length_a 96.98 _cell.length_b 96.98 _cell.length_c 193.84 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4Z2G _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D 1 1 A,B,C,D 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 332 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 328 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 335 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 331 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.003 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C35 H61 N5 O10' _chem_comp.formula_weight 711.886 _chem_comp.id M6V _chem_comp.mon_nstd_flag . _chem_comp.name "(1R,2R,3R,6R,7S,8S,9R,10R,12R,13S,17S)-3-ethyl-2,10-dihydroxy-2,6,8,10,12,15,15,17-octamethyl-5-oxo-9-(prop-2-yn-1-yloxy)-4,14,16-trioxabicyclo[11.3.1]heptadec-7-yl {4-[N'-(methylcarbamoyl)carbamimidamido]butyl}carbamate" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C27 C25 M6V sing 218 n n C26 C25 M6V sing 219 n n C25 O8 M6V sing 220 n n C25 O9 M6V sing 221 n n O8 C9 M6V sing 222 n n O9 C11 M6V sing 223 n n O1 C1 M6V doub 224 n n O7 C6 M6V sing 225 n n C9 C8 M6V sing 226 n n C9 C10 M6V sing 227 n n C11 C10 M6V sing 228 n n C11 C12 M6V sing 229 n n C32 C6 M6V sing 230 n n C30 C2 M6V sing 231 n n C8 C33 M6V sing 232 n n C8 C7 M6V sing 233 n n O10 C12 M6V sing 234 n n C10 C34 M6V sing 235 n n C1 C2 M6V sing 236 n n C1 O2 M6V sing 237 n n C6 C7 M6V sing 238 n n C6 C5 M6V sing 239 n n C13 C12 M6V sing 240 n n C13 C28 M6V sing 241 n n C13 O2 M6V sing 242 n n C29 C28 M6V sing 243 n n C12 C35 M6V sing 244 n n O4 C14 M6V doub 245 n n C2 C3 M6V sing 246 n n C3 C4 M6V sing 247 n n C3 O3 M6V sing 248 n n C5 C4 M6V sing 249 n n C5 O6 M6V sing 250 n n C4 C31 M6V sing 251 n n C14 O3 M6V sing 252 n n C14 N1 M6V sing 253 n n C24 C23 M6V trip 254 n n O6 C22 M6V sing 255 n n C15 N1 M6V sing 256 n n C15 C16 M6V sing 257 n n C23 C22 M6V sing 258 n n C21 N5 M6V sing 259 n n O5 C20 M6V doub 260 n n C16 C17 M6V sing 261 n n N5 C20 M6V sing 262 n n C17 C18 M6V sing 263 n n C20 N4 M6V sing 264 n n N3 C19 M6V doub 265 n n N4 C19 M6V sing 266 n n C19 N2 M6V sing 267 n n C18 N2 M6V sing 268 n n N1 H1 M6V sing 269 n n C2 H2 M6V sing 270 n n N3 H3 M6V sing 271 n n C4 H4 M6V sing 272 n n C5 H5 M6V sing 273 n n C21 H6 M6V sing 274 n n C21 H7 M6V sing 275 n n C21 H8 M6V sing 276 n n N5 H9 M6V sing 277 n n N4 H10 M6V sing 278 n n N2 H11 M6V sing 279 n n C16 H12 M6V sing 280 n n C16 H13 M6V sing 281 n n C15 H14 M6V sing 282 n n C15 H15 M6V sing 283 n n C3 H16 M6V sing 284 n n C31 H17 M6V sing 285 n n C31 H18 M6V sing 286 n n C31 H19 M6V sing 287 n n C30 H20 M6V sing 288 n n C30 H21 M6V sing 289 n n C30 H22 M6V sing 290 n n C13 H23 M6V sing 291 n n C28 H24 M6V sing 292 n n C28 H25 M6V sing 293 n n C29 H26 M6V sing 294 n n C29 H27 M6V sing 295 n n C29 H28 M6V sing 296 n n O10 H29 M6V sing 297 n n C35 H30 M6V sing 298 n n C35 H31 M6V sing 299 n n C35 H32 M6V sing 300 n n C11 H33 M6V sing 301 n n C10 H34 M6V sing 302 n n C34 H35 M6V sing 303 n n C34 H36 M6V sing 304 n n C34 H37 M6V sing 305 n n C26 H38 M6V sing 306 n n C26 H39 M6V sing 307 n n C26 H40 M6V sing 308 n n C27 H41 M6V sing 309 n n C27 H42 M6V sing 310 n n C27 H43 M6V sing 311 n n C9 H44 M6V sing 312 n n C8 H45 M6V sing 313 n n C33 H46 M6V sing 314 n n C33 H47 M6V sing 315 n n C33 H48 M6V sing 316 n n C7 H49 M6V sing 317 n n C7 H50 M6V sing 318 n n O7 H51 M6V sing 319 n n C32 H52 M6V sing 320 n n C32 H53 M6V sing 321 n n C32 H54 M6V sing 322 n n C22 H55 M6V sing 323 n n C22 H56 M6V sing 324 n n C24 H57 M6V sing 325 n n C17 H58 M6V sing 326 n n C17 H59 M6V sing 327 n n C18 H60 M6V sing 328 n n C18 H61 M6V sing 329 n n # _atom_sites.entry_id 4Z2G _atom_sites.fract_transf_matrix[1][1] 0.010311 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010311 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005159 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 M6V A 1 501 501 M6V M6C . C 2 M6V A 1 502 502 M6V M6C . D 3 HOH A 1 601 52 HOH HOH . D 3 HOH A 2 602 39 HOH HOH . D 3 HOH A 3 603 5 HOH HOH . D 3 HOH A 4 604 4 HOH HOH . D 3 HOH A 5 605 37 HOH HOH . D 3 HOH A 6 606 44 HOH HOH . D 3 HOH A 7 607 30 HOH HOH . D 3 HOH A 8 608 19 HOH HOH . D 3 HOH A 9 609 34 HOH HOH . D 3 HOH A 10 610 55 HOH HOH . D 3 HOH A 11 611 15 HOH HOH . D 3 HOH A 12 612 73 HOH HOH . D 3 HOH A 13 613 16 HOH HOH . D 3 HOH A 14 614 85 HOH HOH . D 3 HOH A 15 615 12 HOH HOH . D 3 HOH A 16 616 41 HOH HOH . D 3 HOH A 17 617 91 HOH HOH . D 3 HOH A 18 618 35 HOH HOH . D 3 HOH A 19 619 7 HOH HOH . D 3 HOH A 20 620 23 HOH HOH . D 3 HOH A 21 621 32 HOH HOH . D 3 HOH A 22 622 18 HOH HOH . D 3 HOH A 23 623 2 HOH HOH . D 3 HOH A 24 624 33 HOH HOH . D 3 HOH A 25 625 9 HOH HOH . D 3 HOH A 26 626 1 HOH HOH . D 3 HOH A 27 627 86 HOH HOH . D 3 HOH A 28 628 40 HOH HOH . D 3 HOH A 29 629 14 HOH HOH . D 3 HOH A 30 630 89 HOH HOH . D 3 HOH A 31 631 26 HOH HOH . D 3 HOH A 32 632 31 HOH HOH . D 3 HOH A 33 633 6 HOH HOH . D 3 HOH A 34 634 43 HOH HOH . D 3 HOH A 35 635 48 HOH HOH . D 3 HOH A 36 636 20 HOH HOH . D 3 HOH A 37 637 8 HOH HOH . D 3 HOH A 38 638 29 HOH HOH . D 3 HOH A 39 639 21 HOH HOH . D 3 HOH A 40 640 94 HOH HOH . D 3 HOH A 41 641 42 HOH HOH . D 3 HOH A 42 642 50 HOH HOH . D 3 HOH A 43 643 17 HOH HOH . D 3 HOH A 44 644 88 HOH HOH . D 3 HOH A 45 645 36 HOH HOH . D 3 HOH A 46 646 72 HOH HOH . D 3 HOH A 47 647 66 HOH HOH . D 3 HOH A 48 648 28 HOH HOH . D 3 HOH A 49 649 49 HOH HOH . D 3 HOH A 50 650 3 HOH HOH . D 3 HOH A 51 651 71 HOH HOH . D 3 HOH A 52 652 81 HOH HOH . D 3 HOH A 53 653 82 HOH HOH . D 3 HOH A 54 654 45 HOH HOH . D 3 HOH A 55 655 84 HOH HOH . D 3 HOH A 56 656 46 HOH HOH . D 3 HOH A 57 657 13 HOH HOH . D 3 HOH A 58 658 47 HOH HOH . D 3 HOH A 59 659 25 HOH HOH . D 3 HOH A 60 660 64 HOH HOH . D 3 HOH A 61 661 62 HOH HOH . D 3 HOH A 62 662 11 HOH HOH . D 3 HOH A 63 663 65 HOH HOH . D 3 HOH A 64 664 68 HOH HOH . D 3 HOH A 65 665 74 HOH HOH . D 3 HOH A 66 666 70 HOH HOH . D 3 HOH A 67 667 54 HOH HOH . D 3 HOH A 68 668 61 HOH HOH . D 3 HOH A 69 669 10 HOH HOH . D 3 HOH A 70 670 75 HOH HOH . D 3 HOH A 71 671 90 HOH HOH . D 3 HOH A 72 672 56 HOH HOH . D 3 HOH A 73 673 67 HOH HOH . D 3 HOH A 74 674 93 HOH HOH . D 3 HOH A 75 675 22 HOH HOH . D 3 HOH A 76 676 63 HOH HOH . D 3 HOH A 77 677 87 HOH HOH . D 3 HOH A 78 678 83 HOH HOH . D 3 HOH A 79 679 24 HOH HOH . D 3 HOH A 80 680 69 HOH HOH . D 3 HOH A 81 681 27 HOH HOH . D 3 HOH A 82 682 95 HOH HOH . D 3 HOH A 83 683 53 HOH HOH . D 3 HOH A 84 684 92 HOH HOH . D 3 HOH A 85 685 51 HOH HOH . D 3 HOH A 86 686 76 HOH HOH . D 3 HOH A 87 687 38 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 M6V . . . B 2 -20.758 3.564 -31.519 1 45.58 ? N1 M6V 501 A 1 HETATM 2 C C2 M6V . . . B 2 -24.348 5.491 -33.378 1 57.89 ? C2 M6V 501 A 1 HETATM 3 N N3 M6V . . . B 2 -18.684 -1.817 -29.888 1 37.06 ? N3 M6V 501 A 1 HETATM 4 C C4 M6V . . . B 2 -25.199 3.149 -32.667 1 55.77 ? C4 M6V 501 A 1 HETATM 5 C C5 M6V . . . B 2 -24.927 1.645 -32.928 1 61.26 ? C5 M6V 501 A 1 HETATM 6 C C6 M6V . . . B 2 -25.907 1.05 -33.948 1 58.78 ? C6 M6V 501 A 1 HETATM 7 C C21 M6V . . . B 2 -20.54 -6.279 -30.911 1 30.29 ? C21 M6V 501 A 1 HETATM 8 N N5 M6V . . . B 2 -20.957 -5.091 -30.189 1 30.65 ? N5 M6V 501 A 1 HETATM 9 C C20 M6V . . . B 2 -20.043 -4.139 -30.038 1 30.83 ? C20 M6V 501 A 1 HETATM 10 O O5 M6V . . . B 2 -18.904 -4.268 -30.579 1 28.17 ? O5 M6V 501 A 1 HETATM 11 N N4 M6V . . . B 2 -20.464 -3.095 -29.312 1 31.47 ? N4 M6V 501 A 1 HETATM 12 C C19 M6V . . . B 2 -19.792 -1.959 -29.261 1 35.59 ? C19 M6V 501 A 1 HETATM 13 N N2 M6V . . . B 2 -20.283 -0.95 -28.539 1 39.39 ? N2 M6V 501 A 1 HETATM 14 C C16 M6V . . . B 2 -19.007 2.295 -30.342 1 56.28 ? C16 M6V 501 A 1 HETATM 15 C C15 M6V . . . B 2 -19.464 2.888 -31.691 1 48.34 ? C15 M6V 501 A 1 HETATM 16 C C14 M6V . . . B 2 -21.695 3.587 -32.455 1 39.17 ? C14 M6V 501 A 1 HETATM 17 O O4 M6V . . . B 2 -21.489 3.25 -33.59 1 43.59 ? O4 M6V 501 A 1 HETATM 18 O O3 M6V . . . B 2 -23.031 3.898 -32.05 1 38.81 ? O3 M6V 501 A 1 HETATM 19 C C3 M6V . . . B 2 -24.004 3.993 -33.095 1 54.19 ? C3 M6V 501 A 1 HETATM 20 C C31 M6V . . . B 2 -25.613 3.531 -31.242 1 50.93 ? C31 M6V 501 A 1 HETATM 21 C C30 M6V . . . B 2 -23.257 6.094 -34.269 1 58.14 ? C30 M6V 501 A 1 HETATM 22 C C1 M6V . . . B 2 -25.69 5.725 -34.043 1 56.09 ? C1 M6V 501 A 1 HETATM 23 O O1 M6V . . . B 2 -25.781 5.731 -35.237 1 52.65 ? O1 M6V 501 A 1 HETATM 24 O O2 M6V . . . B 2 -26.909 5.908 -33.27 1 59.57 ? O2 M6V 501 A 1 HETATM 25 C C13 M6V . . . B 2 -28.061 6.443 -33.931 1 67.38 ? C13 M6V 501 A 1 HETATM 26 C C28 M6V . . . B 2 -28.349 7.847 -33.383 1 81.79 ? C28 M6V 501 A 1 HETATM 27 C C29 M6V . . . B 2 -27.201 8.781 -33.727 1 81.76 ? C29 M6V 501 A 1 HETATM 28 C C12 M6V . . . B 2 -29.232 5.499 -33.691 1 63.56 ? C12 M6V 501 A 1 HETATM 29 O O10 M6V . . . B 2 -30.431 6.109 -34.143 1 63.27 ? O10 M6V 501 A 1 HETATM 30 C C35 M6V . . . B 2 -29.503 5.319 -32.193 1 57.86 ? C35 M6V 501 A 1 HETATM 31 C C11 M6V . . . B 2 -28.838 4.217 -34.511 1 67.11 ? C11 M6V 501 A 1 HETATM 32 C C10 M6V . . . B 2 -29.473 2.887 -34.084 1 59.39 ? C10 M6V 501 A 1 HETATM 33 C C34 M6V . . . B 2 -30.987 2.913 -33.918 1 60.55 ? C34 M6V 501 A 1 HETATM 34 O O9 M6V . . . B 2 -28.989 4.358 -35.933 1 62.98 ? O9 M6V 501 A 1 HETATM 35 C C25 M6V . . . B 2 -28.326 3.372 -36.738 1 61.92 ? C25 M6V 501 A 1 HETATM 36 C C26 M6V . . . B 2 -27.04 3.907 -37.352 1 55.47 ? C26 M6V 501 A 1 HETATM 37 C C27 M6V . . . B 2 -29.278 3.014 -37.878 1 65.75 ? C27 M6V 501 A 1 HETATM 38 O O8 M6V . . . B 2 -27.999 2.193 -35.975 1 58.91 ? O8 M6V 501 A 1 HETATM 39 C C9 M6V . . . B 2 -29.006 1.76 -35.031 1 61.67 ? C9 M6V 501 A 1 HETATM 40 C C8 M6V . . . B 2 -28.459 0.522 -34.263 1 63.12 ? C8 M6V 501 A 1 HETATM 41 C C33 M6V . . . B 2 -29.599 -0.186 -33.505 1 58.33 ? C33 M6V 501 A 1 HETATM 42 C C7 M6V . . . B 2 -27.282 0.831 -33.305 1 61.77 ? C7 M6V 501 A 1 HETATM 43 O O7 M6V . . . B 2 -25.978 1.913 -35.091 1 57.53 ? O7 M6V 501 A 1 HETATM 44 C C32 M6V . . . B 2 -25.334 -0.283 -34.404 1 59.93 ? C32 M6V 501 A 1 HETATM 45 O O6 M6V . . . B 2 -24.987 0.847 -31.72 1 58.59 ? O6 M6V 501 A 1 HETATM 46 C C22 M6V . . . B 2 -23.755 0.896 -31.025 1 55.28 ? C22 M6V 501 A 1 HETATM 47 C C23 M6V . . . B 2 -22.843 -0.054 -31.616 1 54.25 ? C23 M6V 501 A 1 HETATM 48 C C24 M6V . . . B 2 -22.035 -0.884 -32.125 1 56.73 ? C24 M6V 501 A 1 HETATM 49 C C17 M6V . . . B 2 -19.405 0.835 -30.111 1 55.03 ? C17 M6V 501 A 1 HETATM 50 C C18 M6V . . . B 2 -19.609 0.367 -28.626 1 51.85 ? C18 M6V 501 A 1 # _model_server_stats.io_time_ms 73 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 337 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 50 #