data_4Z2H # _model_server_result.job_id v7UergxtvG0J9vNu2JYasg _model_server_result.datetime_utc '2024-11-10 01:26:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4z2h # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":503}' # _entry.id 4Z2H # _exptl.entry_id 4Z2H _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4Z2H _cell.length_a 97.997 _cell.length_b 97.997 _cell.length_c 196.97 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4Z2H _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J 1 1 A,B,C,D,E,F,G,H,I,J 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N ? 3 F N N ? 3 G N N ? 3 H N N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 332 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 328 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 335 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 331 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.162 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 4Z2H _atom_sites.fract_transf_matrix[1][1] 0.010204 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010204 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005077 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 M6A A 1 501 501 M6A M6A . C 3 GOL A 1 502 502 GOL GOL . D 3 GOL A 1 503 503 GOL GOL . E 3 GOL A 1 504 504 GOL GOL . F 3 GOL A 1 505 505 GOL GOL . G 3 GOL A 1 506 506 GOL GOL . H 3 GOL A 1 507 507 GOL GOL . I 4 CL A 1 508 508 CL CL . J 5 HOH A 1 601 131 HOH HOH . J 5 HOH A 2 602 75 HOH HOH . J 5 HOH A 3 603 164 HOH HOH . J 5 HOH A 4 604 111 HOH HOH . J 5 HOH A 5 605 127 HOH HOH . J 5 HOH A 6 606 173 HOH HOH . J 5 HOH A 7 607 140 HOH HOH . J 5 HOH A 8 608 255 HOH HOH . J 5 HOH A 9 609 170 HOH HOH . J 5 HOH A 10 610 176 HOH HOH . J 5 HOH A 11 611 124 HOH HOH . J 5 HOH A 12 612 233 HOH HOH . J 5 HOH A 13 613 144 HOH HOH . J 5 HOH A 14 614 183 HOH HOH . J 5 HOH A 15 615 29 HOH HOH . J 5 HOH A 16 616 112 HOH HOH . J 5 HOH A 17 617 38 HOH HOH . J 5 HOH A 18 618 168 HOH HOH . J 5 HOH A 19 619 26 HOH HOH . J 5 HOH A 20 620 90 HOH HOH . J 5 HOH A 21 621 99 HOH HOH . J 5 HOH A 22 622 152 HOH HOH . J 5 HOH A 23 623 27 HOH HOH . J 5 HOH A 24 624 207 HOH HOH . J 5 HOH A 25 625 240 HOH HOH . J 5 HOH A 26 626 108 HOH HOH . J 5 HOH A 27 627 42 HOH HOH . J 5 HOH A 28 628 56 HOH HOH . J 5 HOH A 29 629 139 HOH HOH . J 5 HOH A 30 630 118 HOH HOH . J 5 HOH A 31 631 48 HOH HOH . J 5 HOH A 32 632 92 HOH HOH . J 5 HOH A 33 633 59 HOH HOH . J 5 HOH A 34 634 67 HOH HOH . J 5 HOH A 35 635 53 HOH HOH . J 5 HOH A 36 636 78 HOH HOH . J 5 HOH A 37 637 117 HOH HOH . J 5 HOH A 38 638 191 HOH HOH . J 5 HOH A 39 639 8 HOH HOH . J 5 HOH A 40 640 28 HOH HOH . J 5 HOH A 41 641 63 HOH HOH . J 5 HOH A 42 642 106 HOH HOH . J 5 HOH A 43 643 249 HOH HOH . J 5 HOH A 44 644 57 HOH HOH . J 5 HOH A 45 645 93 HOH HOH . J 5 HOH A 46 646 180 HOH HOH . J 5 HOH A 47 647 129 HOH HOH . J 5 HOH A 48 648 196 HOH HOH . J 5 HOH A 49 649 175 HOH HOH . J 5 HOH A 50 650 179 HOH HOH . J 5 HOH A 51 651 153 HOH HOH . J 5 HOH A 52 652 79 HOH HOH . J 5 HOH A 53 653 190 HOH HOH . J 5 HOH A 54 654 73 HOH HOH . J 5 HOH A 55 655 171 HOH HOH . J 5 HOH A 56 656 14 HOH HOH . J 5 HOH A 57 657 123 HOH HOH . J 5 HOH A 58 658 19 HOH HOH . J 5 HOH A 59 659 16 HOH HOH . J 5 HOH A 60 660 221 HOH HOH . J 5 HOH A 61 661 43 HOH HOH . J 5 HOH A 62 662 32 HOH HOH . J 5 HOH A 63 663 238 HOH HOH . J 5 HOH A 64 664 36 HOH HOH . J 5 HOH A 65 665 102 HOH HOH . J 5 HOH A 66 666 66 HOH HOH . J 5 HOH A 67 667 151 HOH HOH . J 5 HOH A 68 668 61 HOH HOH . J 5 HOH A 69 669 116 HOH HOH . J 5 HOH A 70 670 50 HOH HOH . J 5 HOH A 71 671 3 HOH HOH . J 5 HOH A 72 672 185 HOH HOH . J 5 HOH A 73 673 72 HOH HOH . J 5 HOH A 74 674 101 HOH HOH . J 5 HOH A 75 675 217 HOH HOH . J 5 HOH A 76 676 187 HOH HOH . J 5 HOH A 77 677 20 HOH HOH . J 5 HOH A 78 678 2 HOH HOH . J 5 HOH A 79 679 234 HOH HOH . J 5 HOH A 80 680 172 HOH HOH . J 5 HOH A 81 681 10 HOH HOH . J 5 HOH A 82 682 115 HOH HOH . J 5 HOH A 83 683 232 HOH HOH . J 5 HOH A 84 684 21 HOH HOH . J 5 HOH A 85 685 222 HOH HOH . J 5 HOH A 86 686 24 HOH HOH . J 5 HOH A 87 687 22 HOH HOH . J 5 HOH A 88 688 41 HOH HOH . J 5 HOH A 89 689 126 HOH HOH . J 5 HOH A 90 690 47 HOH HOH . J 5 HOH A 91 691 204 HOH HOH . J 5 HOH A 92 692 69 HOH HOH . J 5 HOH A 93 693 37 HOH HOH . J 5 HOH A 94 694 209 HOH HOH . J 5 HOH A 95 695 70 HOH HOH . J 5 HOH A 96 696 184 HOH HOH . J 5 HOH A 97 697 125 HOH HOH . J 5 HOH A 98 698 178 HOH HOH . J 5 HOH A 99 699 138 HOH HOH . J 5 HOH A 100 700 11 HOH HOH . J 5 HOH A 101 701 148 HOH HOH . J 5 HOH A 102 702 15 HOH HOH . J 5 HOH A 103 703 84 HOH HOH . J 5 HOH A 104 704 202 HOH HOH . J 5 HOH A 105 705 13 HOH HOH . J 5 HOH A 106 706 30 HOH HOH . J 5 HOH A 107 707 71 HOH HOH . J 5 HOH A 108 708 87 HOH HOH . J 5 HOH A 109 709 132 HOH HOH . J 5 HOH A 110 710 60 HOH HOH . J 5 HOH A 111 711 229 HOH HOH . J 5 HOH A 112 712 199 HOH HOH . J 5 HOH A 113 713 51 HOH HOH . J 5 HOH A 114 714 210 HOH HOH . J 5 HOH A 115 715 216 HOH HOH . J 5 HOH A 116 716 1 HOH HOH . J 5 HOH A 117 717 68 HOH HOH . J 5 HOH A 118 718 159 HOH HOH . J 5 HOH A 119 719 242 HOH HOH . J 5 HOH A 120 720 223 HOH HOH . J 5 HOH A 121 721 195 HOH HOH . J 5 HOH A 122 722 82 HOH HOH . J 5 HOH A 123 723 80 HOH HOH . J 5 HOH A 124 724 154 HOH HOH . J 5 HOH A 125 725 193 HOH HOH . J 5 HOH A 126 726 150 HOH HOH . J 5 HOH A 127 727 76 HOH HOH . J 5 HOH A 128 728 77 HOH HOH . J 5 HOH A 129 729 40 HOH HOH . J 5 HOH A 130 730 230 HOH HOH . J 5 HOH A 131 731 155 HOH HOH . J 5 HOH A 132 732 169 HOH HOH . J 5 HOH A 133 733 128 HOH HOH . J 5 HOH A 134 734 134 HOH HOH . J 5 HOH A 135 735 224 HOH HOH . J 5 HOH A 136 736 245 HOH HOH . J 5 HOH A 137 737 228 HOH HOH . J 5 HOH A 138 738 158 HOH HOH . J 5 HOH A 139 739 64 HOH HOH . J 5 HOH A 140 740 212 HOH HOH . J 5 HOH A 141 741 45 HOH HOH . J 5 HOH A 142 742 17 HOH HOH . J 5 HOH A 143 743 186 HOH HOH . J 5 HOH A 144 744 149 HOH HOH . J 5 HOH A 145 745 189 HOH HOH . J 5 HOH A 146 746 25 HOH HOH . J 5 HOH A 147 747 147 HOH HOH . J 5 HOH A 148 748 206 HOH HOH . J 5 HOH A 149 749 12 HOH HOH . J 5 HOH A 150 750 120 HOH HOH . J 5 HOH A 151 751 23 HOH HOH . J 5 HOH A 152 752 167 HOH HOH . J 5 HOH A 153 753 211 HOH HOH . J 5 HOH A 154 754 97 HOH HOH . J 5 HOH A 155 755 100 HOH HOH . J 5 HOH A 156 756 35 HOH HOH . J 5 HOH A 157 757 226 HOH HOH . J 5 HOH A 158 758 49 HOH HOH . J 5 HOH A 159 759 197 HOH HOH . J 5 HOH A 160 760 91 HOH HOH . J 5 HOH A 161 761 31 HOH HOH . J 5 HOH A 162 762 33 HOH HOH . J 5 HOH A 163 763 58 HOH HOH . J 5 HOH A 164 764 52 HOH HOH . J 5 HOH A 165 765 104 HOH HOH . J 5 HOH A 166 766 182 HOH HOH . J 5 HOH A 167 767 203 HOH HOH . J 5 HOH A 168 768 44 HOH HOH . J 5 HOH A 169 769 235 HOH HOH . J 5 HOH A 170 770 133 HOH HOH . J 5 HOH A 171 771 121 HOH HOH . J 5 HOH A 172 772 107 HOH HOH . J 5 HOH A 173 773 208 HOH HOH . J 5 HOH A 174 774 6 HOH HOH . J 5 HOH A 175 775 9 HOH HOH . J 5 HOH A 176 776 248 HOH HOH . J 5 HOH A 177 777 7 HOH HOH . J 5 HOH A 178 778 215 HOH HOH . J 5 HOH A 179 779 46 HOH HOH . J 5 HOH A 180 780 250 HOH HOH . J 5 HOH A 181 781 85 HOH HOH . J 5 HOH A 182 782 188 HOH HOH . J 5 HOH A 183 783 246 HOH HOH . J 5 HOH A 184 784 34 HOH HOH . J 5 HOH A 185 785 143 HOH HOH . J 5 HOH A 186 786 130 HOH HOH . J 5 HOH A 187 787 86 HOH HOH . J 5 HOH A 188 788 74 HOH HOH . J 5 HOH A 189 789 239 HOH HOH . J 5 HOH A 190 790 237 HOH HOH . J 5 HOH A 191 791 160 HOH HOH . J 5 HOH A 192 792 214 HOH HOH . J 5 HOH A 193 793 65 HOH HOH . J 5 HOH A 194 794 62 HOH HOH . J 5 HOH A 195 795 198 HOH HOH . J 5 HOH A 196 796 252 HOH HOH . J 5 HOH A 197 797 18 HOH HOH . J 5 HOH A 198 798 110 HOH HOH . J 5 HOH A 199 799 94 HOH HOH . J 5 HOH A 200 800 4 HOH HOH . J 5 HOH A 201 801 174 HOH HOH . J 5 HOH A 202 802 81 HOH HOH . J 5 HOH A 203 803 205 HOH HOH . J 5 HOH A 204 804 241 HOH HOH . J 5 HOH A 205 805 166 HOH HOH . J 5 HOH A 206 806 109 HOH HOH . J 5 HOH A 207 807 247 HOH HOH . J 5 HOH A 208 808 95 HOH HOH . J 5 HOH A 209 809 136 HOH HOH . J 5 HOH A 210 810 39 HOH HOH . J 5 HOH A 211 811 98 HOH HOH . J 5 HOH A 212 812 254 HOH HOH . J 5 HOH A 213 813 243 HOH HOH . J 5 HOH A 214 814 200 HOH HOH . J 5 HOH A 215 815 213 HOH HOH . J 5 HOH A 216 816 119 HOH HOH . J 5 HOH A 217 817 89 HOH HOH . J 5 HOH A 218 818 163 HOH HOH . J 5 HOH A 219 819 83 HOH HOH . J 5 HOH A 220 820 5 HOH HOH . J 5 HOH A 221 821 137 HOH HOH . J 5 HOH A 222 822 96 HOH HOH . J 5 HOH A 223 823 122 HOH HOH . J 5 HOH A 224 824 219 HOH HOH . J 5 HOH A 225 825 225 HOH HOH . J 5 HOH A 226 826 220 HOH HOH . J 5 HOH A 227 827 142 HOH HOH . J 5 HOH A 228 828 157 HOH HOH . J 5 HOH A 229 829 141 HOH HOH . J 5 HOH A 230 830 156 HOH HOH . J 5 HOH A 231 831 244 HOH HOH . J 5 HOH A 232 832 162 HOH HOH . J 5 HOH A 233 833 146 HOH HOH . J 5 HOH A 234 834 55 HOH HOH . J 5 HOH A 235 835 236 HOH HOH . J 5 HOH A 236 836 192 HOH HOH . J 5 HOH A 237 837 177 HOH HOH . J 5 HOH A 238 838 165 HOH HOH . J 5 HOH A 239 839 194 HOH HOH . J 5 HOH A 240 840 105 HOH HOH . J 5 HOH A 241 841 231 HOH HOH . J 5 HOH A 242 842 251 HOH HOH . J 5 HOH A 243 843 257 HOH HOH . J 5 HOH A 244 844 227 HOH HOH . J 5 HOH A 245 845 135 HOH HOH . J 5 HOH A 246 846 114 HOH HOH . J 5 HOH A 247 847 145 HOH HOH . J 5 HOH A 248 848 253 HOH HOH . J 5 HOH A 249 849 103 HOH HOH . J 5 HOH A 250 850 181 HOH HOH . J 5 HOH A 251 851 113 HOH HOH . J 5 HOH A 252 852 161 HOH HOH . J 5 HOH A 253 853 218 HOH HOH . J 5 HOH A 254 854 54 HOH HOH . J 5 HOH A 255 855 201 HOH HOH . J 5 HOH A 256 856 88 HOH HOH . J 5 HOH A 257 857 256 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . D 3 -2.419 -3.864 -14.603 1 38.77 ? C1 GOL 503 A 1 HETATM 2 O O1 GOL . . . D 3 -2.225 -2.719 -15.419 1 30.3 ? O1 GOL 503 A 1 HETATM 3 C C2 GOL . . . D 3 -1.139 -4.258 -13.88 1 41.8 ? C2 GOL 503 A 1 HETATM 4 O O2 GOL . . . D 3 -1.3 -5.585 -13.347 1 38.53 ? O2 GOL 503 A 1 HETATM 5 C C3 GOL . . . D 3 -0.839 -3.199 -12.825 1 41.78 ? C3 GOL 503 A 1 HETATM 6 O O3 GOL . . . D 3 -0.465 -2.035 -13.563 1 39.45 ? O3 GOL 503 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 301 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 6 #