data_4Z2J # _model_server_result.job_id xpgutSq35OW3YoOsbwOjng _model_server_result.datetime_utc '2024-11-13 00:21:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4z2j # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":505}' # _entry.id 4Z2J # _exptl.entry_id 4Z2J _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4Z2J _cell.length_a 97.72 _cell.length_b 97.72 _cell.length_c 196.68 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4Z2J _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G 1 1 A,B,C,D,E,F,G 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 332 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 328 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 335 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 331 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.154 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 4Z2J _atom_sites.fract_transf_matrix[1][1] 0.010233 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010233 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005084 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 M6G A 1 501 501 M6G M6D . C 2 M6G A 1 502 502 M6G M6D . D 3 GOL A 1 503 503 GOL GOL . E 4 PO4 A 1 504 1 PO4 PO4 . F 3 GOL A 1 505 2 GOL GOL . G 5 HOH A 1 601 155 HOH HOH . G 5 HOH A 2 602 106 HOH HOH . G 5 HOH A 3 603 167 HOH HOH . G 5 HOH A 4 604 102 HOH HOH . G 5 HOH A 5 605 36 HOH HOH . G 5 HOH A 6 606 60 HOH HOH . G 5 HOH A 7 607 81 HOH HOH . G 5 HOH A 8 608 173 HOH HOH . G 5 HOH A 9 609 74 HOH HOH . G 5 HOH A 10 610 78 HOH HOH . G 5 HOH A 11 611 59 HOH HOH . G 5 HOH A 12 612 83 HOH HOH . G 5 HOH A 13 613 143 HOH HOH . G 5 HOH A 14 614 116 HOH HOH . G 5 HOH A 15 615 120 HOH HOH . G 5 HOH A 16 616 77 HOH HOH . G 5 HOH A 17 617 14 HOH HOH . G 5 HOH A 18 618 22 HOH HOH . G 5 HOH A 19 619 127 HOH HOH . G 5 HOH A 20 620 125 HOH HOH . G 5 HOH A 21 621 128 HOH HOH . G 5 HOH A 22 622 169 HOH HOH . G 5 HOH A 23 623 99 HOH HOH . G 5 HOH A 24 624 33 HOH HOH . G 5 HOH A 25 625 103 HOH HOH . G 5 HOH A 26 626 161 HOH HOH . G 5 HOH A 27 627 53 HOH HOH . G 5 HOH A 28 628 91 HOH HOH . G 5 HOH A 29 629 27 HOH HOH . G 5 HOH A 30 630 97 HOH HOH . G 5 HOH A 31 631 56 HOH HOH . G 5 HOH A 32 632 34 HOH HOH . G 5 HOH A 33 633 142 HOH HOH . G 5 HOH A 34 634 114 HOH HOH . G 5 HOH A 35 635 35 HOH HOH . G 5 HOH A 36 636 159 HOH HOH . G 5 HOH A 37 637 98 HOH HOH . G 5 HOH A 38 638 10 HOH HOH . G 5 HOH A 39 639 118 HOH HOH . G 5 HOH A 40 640 68 HOH HOH . G 5 HOH A 41 641 90 HOH HOH . G 5 HOH A 42 642 16 HOH HOH . G 5 HOH A 43 643 88 HOH HOH . G 5 HOH A 44 644 3 HOH HOH . G 5 HOH A 45 645 144 HOH HOH . G 5 HOH A 46 646 23 HOH HOH . G 5 HOH A 47 647 107 HOH HOH . G 5 HOH A 48 648 147 HOH HOH . G 5 HOH A 49 649 1 HOH HOH . G 5 HOH A 50 650 45 HOH HOH . G 5 HOH A 51 651 105 HOH HOH . G 5 HOH A 52 652 4 HOH HOH . G 5 HOH A 53 653 51 HOH HOH . G 5 HOH A 54 654 17 HOH HOH . G 5 HOH A 55 655 7 HOH HOH . G 5 HOH A 56 656 26 HOH HOH . G 5 HOH A 57 657 43 HOH HOH . G 5 HOH A 58 658 21 HOH HOH . G 5 HOH A 59 659 13 HOH HOH . G 5 HOH A 60 660 47 HOH HOH . G 5 HOH A 61 661 109 HOH HOH . G 5 HOH A 62 662 117 HOH HOH . G 5 HOH A 63 663 61 HOH HOH . G 5 HOH A 64 664 44 HOH HOH . G 5 HOH A 65 665 75 HOH HOH . G 5 HOH A 66 666 49 HOH HOH . G 5 HOH A 67 667 76 HOH HOH . G 5 HOH A 68 668 86 HOH HOH . G 5 HOH A 69 669 119 HOH HOH . G 5 HOH A 70 670 115 HOH HOH . G 5 HOH A 71 671 72 HOH HOH . G 5 HOH A 72 672 54 HOH HOH . G 5 HOH A 73 673 64 HOH HOH . G 5 HOH A 74 674 2 HOH HOH . G 5 HOH A 75 675 79 HOH HOH . G 5 HOH A 76 676 18 HOH HOH . G 5 HOH A 77 677 93 HOH HOH . G 5 HOH A 78 678 124 HOH HOH . G 5 HOH A 79 679 175 HOH HOH . G 5 HOH A 80 680 136 HOH HOH . G 5 HOH A 81 681 158 HOH HOH . G 5 HOH A 82 682 146 HOH HOH . G 5 HOH A 83 683 132 HOH HOH . G 5 HOH A 84 684 133 HOH HOH . G 5 HOH A 85 685 145 HOH HOH . G 5 HOH A 86 686 20 HOH HOH . G 5 HOH A 87 687 141 HOH HOH . G 5 HOH A 88 688 38 HOH HOH . G 5 HOH A 89 689 134 HOH HOH . G 5 HOH A 90 690 29 HOH HOH . G 5 HOH A 91 691 101 HOH HOH . G 5 HOH A 92 692 131 HOH HOH . G 5 HOH A 93 693 85 HOH HOH . G 5 HOH A 94 694 66 HOH HOH . G 5 HOH A 95 695 32 HOH HOH . G 5 HOH A 96 696 135 HOH HOH . G 5 HOH A 97 697 96 HOH HOH . G 5 HOH A 98 698 112 HOH HOH . G 5 HOH A 99 699 65 HOH HOH . G 5 HOH A 100 700 73 HOH HOH . G 5 HOH A 101 701 126 HOH HOH . G 5 HOH A 102 702 15 HOH HOH . G 5 HOH A 103 703 5 HOH HOH . G 5 HOH A 104 704 80 HOH HOH . G 5 HOH A 105 705 108 HOH HOH . G 5 HOH A 106 706 48 HOH HOH . G 5 HOH A 107 707 82 HOH HOH . G 5 HOH A 108 708 63 HOH HOH . G 5 HOH A 109 709 37 HOH HOH . G 5 HOH A 110 710 8 HOH HOH . G 5 HOH A 111 711 129 HOH HOH . G 5 HOH A 112 712 31 HOH HOH . G 5 HOH A 113 713 153 HOH HOH . G 5 HOH A 114 714 111 HOH HOH . G 5 HOH A 115 715 104 HOH HOH . G 5 HOH A 116 716 28 HOH HOH . G 5 HOH A 117 717 122 HOH HOH . G 5 HOH A 118 718 92 HOH HOH . G 5 HOH A 119 719 94 HOH HOH . G 5 HOH A 120 720 19 HOH HOH . G 5 HOH A 121 721 42 HOH HOH . G 5 HOH A 122 722 140 HOH HOH . G 5 HOH A 123 723 11 HOH HOH . G 5 HOH A 124 724 113 HOH HOH . G 5 HOH A 125 725 156 HOH HOH . G 5 HOH A 126 726 46 HOH HOH . G 5 HOH A 127 727 130 HOH HOH . G 5 HOH A 128 728 39 HOH HOH . G 5 HOH A 129 729 57 HOH HOH . G 5 HOH A 130 730 148 HOH HOH . G 5 HOH A 131 731 174 HOH HOH . G 5 HOH A 132 732 41 HOH HOH . G 5 HOH A 133 733 24 HOH HOH . G 5 HOH A 134 734 55 HOH HOH . G 5 HOH A 135 735 139 HOH HOH . G 5 HOH A 136 736 69 HOH HOH . G 5 HOH A 137 737 9 HOH HOH . G 5 HOH A 138 738 84 HOH HOH . G 5 HOH A 139 739 62 HOH HOH . G 5 HOH A 140 740 12 HOH HOH . G 5 HOH A 141 741 50 HOH HOH . G 5 HOH A 142 742 58 HOH HOH . G 5 HOH A 143 743 52 HOH HOH . G 5 HOH A 144 744 25 HOH HOH . G 5 HOH A 145 745 30 HOH HOH . G 5 HOH A 146 746 149 HOH HOH . G 5 HOH A 147 747 40 HOH HOH . G 5 HOH A 148 748 123 HOH HOH . G 5 HOH A 149 749 181 HOH HOH . G 5 HOH A 150 750 87 HOH HOH . G 5 HOH A 151 751 67 HOH HOH . G 5 HOH A 152 752 71 HOH HOH . G 5 HOH A 153 753 162 HOH HOH . G 5 HOH A 154 754 6 HOH HOH . G 5 HOH A 155 755 137 HOH HOH . G 5 HOH A 156 756 150 HOH HOH . G 5 HOH A 157 757 100 HOH HOH . G 5 HOH A 158 758 165 HOH HOH . G 5 HOH A 159 759 121 HOH HOH . G 5 HOH A 160 760 152 HOH HOH . G 5 HOH A 161 761 160 HOH HOH . G 5 HOH A 162 762 110 HOH HOH . G 5 HOH A 163 763 154 HOH HOH . G 5 HOH A 164 764 178 HOH HOH . G 5 HOH A 165 765 138 HOH HOH . G 5 HOH A 166 766 89 HOH HOH . G 5 HOH A 167 767 70 HOH HOH . G 5 HOH A 168 768 166 HOH HOH . G 5 HOH A 169 769 177 HOH HOH . G 5 HOH A 170 770 164 HOH HOH . G 5 HOH A 171 771 163 HOH HOH . G 5 HOH A 172 772 157 HOH HOH . G 5 HOH A 173 773 170 HOH HOH . G 5 HOH A 174 774 95 HOH HOH . G 5 HOH A 175 775 171 HOH HOH . G 5 HOH A 176 776 168 HOH HOH . G 5 HOH A 177 777 151 HOH HOH . G 5 HOH A 178 778 176 HOH HOH . G 5 HOH A 179 779 172 HOH HOH . G 5 HOH A 180 780 180 HOH HOH . G 5 HOH A 181 781 179 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . F 3 -5.234 -5.525 -5.263 1 36.89 ? C1 GOL 505 A 1 HETATM 2 O O1 GOL . . . F 3 -6.565 -5.027 -5.132 1 32.61 ? O1 GOL 505 A 1 HETATM 3 C C2 GOL . . . F 3 -4.169 -4.507 -4.812 1 34.81 ? C2 GOL 505 A 1 HETATM 4 O O2 GOL . . . F 3 -3.402 -4.039 -5.923 1 33.11 ? O2 GOL 505 A 1 HETATM 5 C C3 GOL . . . F 3 -4.729 -3.281 -4.135 1 36.09 ? C3 GOL 505 A 1 HETATM 6 O O3 GOL . . . F 3 -3.624 -2.77 -3.403 1 41.17 ? O3 GOL 505 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 294 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 6 #