data_4Z2K
#
_model_server_result.job_id            FW0tHGWcO775w2m5AlZVWw 
_model_server_result.datetime_utc      '2024-11-13 00:14:12' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4z2k 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":503}' 
#
_entry.id    4Z2K 
#
_exptl.entry_id    4Z2K 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4Z2K 
_cell.length_a            97.74 
_cell.length_b            97.74 
_cell.length_c            197.03 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4Z2K 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        96 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 43 21 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
PISA dimeric 2 software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,F 1 1 
A,B,C,D,E,F 2 1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
? 3 E N N 
#
_struct_conn.conn_type_id                   disulf 
_struct_conn.details                        ? 
_struct_conn.id                             disulf1 
_struct_conn.ptnr1_label_asym_id            A 
_struct_conn.ptnr1_label_atom_id            SG 
_struct_conn.ptnr1_label_comp_id            CYS 
_struct_conn.ptnr1_label_seq_id             332 
_struct_conn.ptnr1_auth_asym_id             A 
_struct_conn.ptnr1_auth_comp_id             CYS 
_struct_conn.ptnr1_auth_seq_id              328 
_struct_conn.ptnr1_symmetry                 1_555 
_struct_conn.ptnr2_label_asym_id            A 
_struct_conn.ptnr2_label_atom_id            SG 
_struct_conn.ptnr2_label_comp_id            CYS 
_struct_conn.ptnr2_label_seq_id             335 
_struct_conn.ptnr2_auth_asym_id             A 
_struct_conn.ptnr2_auth_comp_id             CYS 
_struct_conn.ptnr2_auth_seq_id              331 
_struct_conn.ptnr2_symmetry                 1_555 
_struct_conn.pdbx_ptnr1_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr1_label_alt_id        ? 
_struct_conn.pdbx_ptnr1_standard_comp_id    ? 
_struct_conn.pdbx_ptnr2_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr2_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr3_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_label_asym_id       ? 
_struct_conn.pdbx_ptnr3_label_atom_id       ? 
_struct_conn.pdbx_ptnr3_label_comp_id       ? 
_struct_conn.pdbx_ptnr3_label_seq_id        ? 
_struct_conn.pdbx_PDB_id                    ? 
_struct_conn.pdbx_dist_value                2.139 
_struct_conn.pdbx_value_order               ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     4Z2K 
_atom_sites.fract_transf_matrix[1][1]    0.010231 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010231 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005075 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 M6E A 1 501 501 M6E M6E . 
C 3 GOL A 1 502 502 GOL GOL . 
D 3 GOL A 1 503 503 GOL GOL . 
E 3 GOL A 1 504 504 GOL GOL . 
F 4 HOH A 1 601 109 HOH HOH . 
F 4 HOH A 2 602 150 HOH HOH . 
F 4 HOH A 3 603 197 HOH HOH . 
F 4 HOH A 4 604 189 HOH HOH . 
F 4 HOH A 5 605 184 HOH HOH . 
F 4 HOH A 6 606 90 HOH HOH . 
F 4 HOH A 7 607 173 HOH HOH . 
F 4 HOH A 8 608 217 HOH HOH . 
F 4 HOH A 9 609 178 HOH HOH . 
F 4 HOH A 10 610 158 HOH HOH . 
F 4 HOH A 11 611 151 HOH HOH . 
F 4 HOH A 12 612 59 HOH HOH . 
F 4 HOH A 13 613 190 HOH HOH . 
F 4 HOH A 14 614 229 HOH HOH . 
F 4 HOH A 15 615 111 HOH HOH . 
F 4 HOH A 16 616 164 HOH HOH . 
F 4 HOH A 17 617 166 HOH HOH . 
F 4 HOH A 18 618 2 HOH HOH . 
F 4 HOH A 19 619 98 HOH HOH . 
F 4 HOH A 20 620 192 HOH HOH . 
F 4 HOH A 21 621 116 HOH HOH . 
F 4 HOH A 22 622 3 HOH HOH . 
F 4 HOH A 23 623 79 HOH HOH . 
F 4 HOH A 24 624 161 HOH HOH . 
F 4 HOH A 25 625 154 HOH HOH . 
F 4 HOH A 26 626 127 HOH HOH . 
F 4 HOH A 27 627 163 HOH HOH . 
F 4 HOH A 28 628 71 HOH HOH . 
F 4 HOH A 29 629 205 HOH HOH . 
F 4 HOH A 30 630 125 HOH HOH . 
F 4 HOH A 31 631 220 HOH HOH . 
F 4 HOH A 32 632 101 HOH HOH . 
F 4 HOH A 33 633 169 HOH HOH . 
F 4 HOH A 34 634 238 HOH HOH . 
F 4 HOH A 35 635 91 HOH HOH . 
F 4 HOH A 36 636 16 HOH HOH . 
F 4 HOH A 37 637 66 HOH HOH . 
F 4 HOH A 38 638 24 HOH HOH . 
F 4 HOH A 39 639 65 HOH HOH . 
F 4 HOH A 40 640 60 HOH HOH . 
F 4 HOH A 41 641 76 HOH HOH . 
F 4 HOH A 42 642 177 HOH HOH . 
F 4 HOH A 43 643 53 HOH HOH . 
F 4 HOH A 44 644 179 HOH HOH . 
F 4 HOH A 45 645 147 HOH HOH . 
F 4 HOH A 46 646 48 HOH HOH . 
F 4 HOH A 47 647 13 HOH HOH . 
F 4 HOH A 48 648 46 HOH HOH . 
F 4 HOH A 49 649 221 HOH HOH . 
F 4 HOH A 50 650 38 HOH HOH . 
F 4 HOH A 51 651 137 HOH HOH . 
F 4 HOH A 52 652 207 HOH HOH . 
F 4 HOH A 53 653 50 HOH HOH . 
F 4 HOH A 54 654 102 HOH HOH . 
F 4 HOH A 55 655 19 HOH HOH . 
F 4 HOH A 56 656 28 HOH HOH . 
F 4 HOH A 57 657 183 HOH HOH . 
F 4 HOH A 58 658 34 HOH HOH . 
F 4 HOH A 59 659 202 HOH HOH . 
F 4 HOH A 60 660 103 HOH HOH . 
F 4 HOH A 61 661 43 HOH HOH . 
F 4 HOH A 62 662 81 HOH HOH . 
F 4 HOH A 63 663 32 HOH HOH . 
F 4 HOH A 64 664 128 HOH HOH . 
F 4 HOH A 65 665 149 HOH HOH . 
F 4 HOH A 66 666 15 HOH HOH . 
F 4 HOH A 67 667 99 HOH HOH . 
F 4 HOH A 68 668 114 HOH HOH . 
F 4 HOH A 69 669 29 HOH HOH . 
F 4 HOH A 70 670 134 HOH HOH . 
F 4 HOH A 71 671 167 HOH HOH . 
F 4 HOH A 72 672 6 HOH HOH . 
F 4 HOH A 73 673 35 HOH HOH . 
F 4 HOH A 74 674 143 HOH HOH . 
F 4 HOH A 75 675 110 HOH HOH . 
F 4 HOH A 76 676 135 HOH HOH . 
F 4 HOH A 77 677 10 HOH HOH . 
F 4 HOH A 78 678 18 HOH HOH . 
F 4 HOH A 79 679 180 HOH HOH . 
F 4 HOH A 80 680 30 HOH HOH . 
F 4 HOH A 81 681 9 HOH HOH . 
F 4 HOH A 82 682 211 HOH HOH . 
F 4 HOH A 83 683 22 HOH HOH . 
F 4 HOH A 84 684 191 HOH HOH . 
F 4 HOH A 85 685 208 HOH HOH . 
F 4 HOH A 86 686 204 HOH HOH . 
F 4 HOH A 87 687 70 HOH HOH . 
F 4 HOH A 88 688 1 HOH HOH . 
F 4 HOH A 89 689 160 HOH HOH . 
F 4 HOH A 90 690 47 HOH HOH . 
F 4 HOH A 91 691 148 HOH HOH . 
F 4 HOH A 92 692 145 HOH HOH . 
F 4 HOH A 93 693 82 HOH HOH . 
F 4 HOH A 94 694 231 HOH HOH . 
F 4 HOH A 95 695 162 HOH HOH . 
F 4 HOH A 96 696 64 HOH HOH . 
F 4 HOH A 97 697 203 HOH HOH . 
F 4 HOH A 98 698 209 HOH HOH . 
F 4 HOH A 99 699 12 HOH HOH . 
F 4 HOH A 100 700 44 HOH HOH . 
F 4 HOH A 101 701 55 HOH HOH . 
F 4 HOH A 102 702 168 HOH HOH . 
F 4 HOH A 103 703 235 HOH HOH . 
F 4 HOH A 104 704 175 HOH HOH . 
F 4 HOH A 105 705 97 HOH HOH . 
F 4 HOH A 106 706 5 HOH HOH . 
F 4 HOH A 107 707 86 HOH HOH . 
F 4 HOH A 108 708 94 HOH HOH . 
F 4 HOH A 109 709 74 HOH HOH . 
F 4 HOH A 110 710 213 HOH HOH . 
F 4 HOH A 111 711 201 HOH HOH . 
F 4 HOH A 112 712 186 HOH HOH . 
F 4 HOH A 113 713 42 HOH HOH . 
F 4 HOH A 114 714 52 HOH HOH . 
F 4 HOH A 115 715 27 HOH HOH . 
F 4 HOH A 116 716 182 HOH HOH . 
F 4 HOH A 117 717 20 HOH HOH . 
F 4 HOH A 118 718 69 HOH HOH . 
F 4 HOH A 119 719 54 HOH HOH . 
F 4 HOH A 120 720 40 HOH HOH . 
F 4 HOH A 121 721 206 HOH HOH . 
F 4 HOH A 122 722 68 HOH HOH . 
F 4 HOH A 123 723 132 HOH HOH . 
F 4 HOH A 124 724 88 HOH HOH . 
F 4 HOH A 125 725 25 HOH HOH . 
F 4 HOH A 126 726 4 HOH HOH . 
F 4 HOH A 127 727 113 HOH HOH . 
F 4 HOH A 128 728 174 HOH HOH . 
F 4 HOH A 129 729 155 HOH HOH . 
F 4 HOH A 130 730 140 HOH HOH . 
F 4 HOH A 131 731 227 HOH HOH . 
F 4 HOH A 132 732 84 HOH HOH . 
F 4 HOH A 133 733 176 HOH HOH . 
F 4 HOH A 134 734 152 HOH HOH . 
F 4 HOH A 135 735 133 HOH HOH . 
F 4 HOH A 136 736 218 HOH HOH . 
F 4 HOH A 137 737 144 HOH HOH . 
F 4 HOH A 138 738 11 HOH HOH . 
F 4 HOH A 139 739 39 HOH HOH . 
F 4 HOH A 140 740 7 HOH HOH . 
F 4 HOH A 141 741 85 HOH HOH . 
F 4 HOH A 142 742 181 HOH HOH . 
F 4 HOH A 143 743 115 HOH HOH . 
F 4 HOH A 144 744 237 HOH HOH . 
F 4 HOH A 145 745 193 HOH HOH . 
F 4 HOH A 146 746 199 HOH HOH . 
F 4 HOH A 147 747 31 HOH HOH . 
F 4 HOH A 148 748 61 HOH HOH . 
F 4 HOH A 149 749 185 HOH HOH . 
F 4 HOH A 150 750 170 HOH HOH . 
F 4 HOH A 151 751 67 HOH HOH . 
F 4 HOH A 152 752 219 HOH HOH . 
F 4 HOH A 153 753 89 HOH HOH . 
F 4 HOH A 154 754 33 HOH HOH . 
F 4 HOH A 155 755 92 HOH HOH . 
F 4 HOH A 156 756 142 HOH HOH . 
F 4 HOH A 157 757 136 HOH HOH . 
F 4 HOH A 158 758 93 HOH HOH . 
F 4 HOH A 159 759 195 HOH HOH . 
F 4 HOH A 160 760 62 HOH HOH . 
F 4 HOH A 161 761 122 HOH HOH . 
F 4 HOH A 162 762 225 HOH HOH . 
F 4 HOH A 163 763 100 HOH HOH . 
F 4 HOH A 164 764 200 HOH HOH . 
F 4 HOH A 165 765 130 HOH HOH . 
F 4 HOH A 166 766 26 HOH HOH . 
F 4 HOH A 167 767 156 HOH HOH . 
F 4 HOH A 168 768 63 HOH HOH . 
F 4 HOH A 169 769 78 HOH HOH . 
F 4 HOH A 170 770 117 HOH HOH . 
F 4 HOH A 171 771 45 HOH HOH . 
F 4 HOH A 172 772 49 HOH HOH . 
F 4 HOH A 173 773 21 HOH HOH . 
F 4 HOH A 174 774 239 HOH HOH . 
F 4 HOH A 175 775 126 HOH HOH . 
F 4 HOH A 176 776 106 HOH HOH . 
F 4 HOH A 177 777 87 HOH HOH . 
F 4 HOH A 178 778 222 HOH HOH . 
F 4 HOH A 179 779 58 HOH HOH . 
F 4 HOH A 180 780 112 HOH HOH . 
F 4 HOH A 181 781 210 HOH HOH . 
F 4 HOH A 182 782 226 HOH HOH . 
F 4 HOH A 183 783 56 HOH HOH . 
F 4 HOH A 184 784 77 HOH HOH . 
F 4 HOH A 185 785 104 HOH HOH . 
F 4 HOH A 186 786 107 HOH HOH . 
F 4 HOH A 187 787 194 HOH HOH . 
F 4 HOH A 188 788 157 HOH HOH . 
F 4 HOH A 189 789 41 HOH HOH . 
F 4 HOH A 190 790 95 HOH HOH . 
F 4 HOH A 191 791 120 HOH HOH . 
F 4 HOH A 192 792 146 HOH HOH . 
F 4 HOH A 193 793 14 HOH HOH . 
F 4 HOH A 194 794 153 HOH HOH . 
F 4 HOH A 195 795 228 HOH HOH . 
F 4 HOH A 196 796 83 HOH HOH . 
F 4 HOH A 197 797 216 HOH HOH . 
F 4 HOH A 198 798 17 HOH HOH . 
F 4 HOH A 199 799 129 HOH HOH . 
F 4 HOH A 200 800 51 HOH HOH . 
F 4 HOH A 201 801 124 HOH HOH . 
F 4 HOH A 202 802 75 HOH HOH . 
F 4 HOH A 203 803 123 HOH HOH . 
F 4 HOH A 204 804 215 HOH HOH . 
F 4 HOH A 205 805 36 HOH HOH . 
F 4 HOH A 206 806 131 HOH HOH . 
F 4 HOH A 207 807 234 HOH HOH . 
F 4 HOH A 208 808 72 HOH HOH . 
F 4 HOH A 209 809 57 HOH HOH . 
F 4 HOH A 210 810 96 HOH HOH . 
F 4 HOH A 211 811 8 HOH HOH . 
F 4 HOH A 212 812 214 HOH HOH . 
F 4 HOH A 213 813 224 HOH HOH . 
F 4 HOH A 214 814 23 HOH HOH . 
F 4 HOH A 215 815 232 HOH HOH . 
F 4 HOH A 216 816 119 HOH HOH . 
F 4 HOH A 217 817 80 HOH HOH . 
F 4 HOH A 218 818 108 HOH HOH . 
F 4 HOH A 219 819 118 HOH HOH . 
F 4 HOH A 220 820 236 HOH HOH . 
F 4 HOH A 221 821 198 HOH HOH . 
F 4 HOH A 222 822 73 HOH HOH . 
F 4 HOH A 223 823 240 HOH HOH . 
F 4 HOH A 224 824 188 HOH HOH . 
F 4 HOH A 225 825 212 HOH HOH . 
F 4 HOH A 226 826 37 HOH HOH . 
F 4 HOH A 227 827 196 HOH HOH . 
F 4 HOH A 228 828 138 HOH HOH . 
F 4 HOH A 229 829 223 HOH HOH . 
F 4 HOH A 230 830 233 HOH HOH . 
F 4 HOH A 231 831 230 HOH HOH . 
F 4 HOH A 232 832 187 HOH HOH . 
F 4 HOH A 233 833 121 HOH HOH . 
F 4 HOH A 234 834 139 HOH HOH . 
F 4 HOH A 235 835 141 HOH HOH . 
F 4 HOH A 236 836 172 HOH HOH . 
F 4 HOH A 237 837 165 HOH HOH . 
F 4 HOH A 238 838 159 HOH HOH . 
F 4 HOH A 239 839 105 HOH HOH . 
F 4 HOH A 240 840 171 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . D 3 -2.032 -3.84 -14.885 1 37.05 ? C1 GOL 503 A 1 
HETATM 2 O O1 GOL . . . D 3 -2.241 -2.538 -15.385 1 42.36 ? O1 GOL 503 A 1 
HETATM 3 C C2 GOL . . . D 3 -0.822 -3.801 -13.974 1 44.85 ? C2 GOL 503 A 1 
HETATM 4 O O2 GOL . . . D 3 -0.586 -2.489 -13.458 1 38.22 ? O2 GOL 503 A 1 
HETATM 5 C C3 GOL . . . D 3 -1.102 -4.801 -12.87 1 48.27 ? C3 GOL 503 A 1 
HETATM 6 O O3 GOL . . . D 3 -1.256 -6.078 -13.496 1 44.53 ? O3 GOL 503 A 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           303 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           6 
#