data_4Z34 # _model_server_result.job_id nd6BOh-JzjFVW5JMvKuDTA _model_server_result.datetime_utc '2024-11-21 23:46:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4z34 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":2001}' # _entry.id 4Z34 # _exptl.entry_id 4Z34 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 521.601 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '{1-[(2S,3S)-2-(2,3-dihydro-1H-inden-2-ylmethyl)-3-(3,5-dimethoxy-4-methylphenyl)-3-hydroxypropyl]-4-(methoxycarbonyl)-1 H-pyrrol-3-yl}acetic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4Z34 _cell.length_a 34.28 _cell.length_b 112.15 _cell.length_c 154.63 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4Z34 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 42 A CYS 24 1_555 A SG CYS 208 A CYS 190 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? disulf ? disulf2 A SG CYS 206 A CYS 188 1_555 A SG CYS 213 A CYS 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf3 A SG CYS 393 A CYS 284 1_555 A SG CYS 396 A CYS 287 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? # _chem_comp.formula 'C30 H35 N O7' _chem_comp.formula_weight 521.601 _chem_comp.id ON7 _chem_comp.mon_nstd_flag . _chem_comp.name '{1-[(2S,3S)-2-(2,3-dihydro-1H-inden-2-ylmethyl)-3-(3,5-dimethoxy-4-methylphenyl)-3-hydroxypropyl]-4-(methoxycarbonyl)-1 H-pyrrol-3-yl}acetic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ONO9780307 # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C4 O1 ON7 sing 287 n n C21 C20 ON7 doub 288 n y C21 C22 ON7 sing 289 n y O1 C1 ON7 sing 290 n n C10 C9 ON7 sing 291 n n C20 C19 ON7 sing 292 n y C22 C17 ON7 doub 293 n y C1 C9 ON7 doub 294 n y C1 C2 ON7 sing 295 n y C9 C7 ON7 sing 296 n y C19 C18 ON7 doub 297 n y C17 C18 ON7 sing 298 n y C17 C15 ON7 sing 299 n n C2 C3 ON7 doub 300 n y C18 C16 ON7 sing 301 n n C7 O3 ON7 sing 302 n n C7 C5 ON7 doub 303 n y O3 C11 ON7 sing 304 n n C15 C14 ON7 sing 305 n n C3 C5 ON7 sing 306 n y C3 C6 ON7 sing 307 n n C16 C14 ON7 sing 308 n n C14 C12 ON7 sing 309 n n C12 C8 ON7 sing 310 n n C6 C8 ON7 sing 311 n n C6 O2 ON7 sing 312 n n C29 O4 ON7 sing 313 n n O4 C28 ON7 sing 314 n n C8 C13 ON7 sing 315 n n C28 C25 ON7 sing 316 n n C28 O5 ON7 doub 317 n n C26 C25 ON7 doub 318 n y C26 N1 ON7 sing 319 n y C25 C24 ON7 sing 320 n y N1 C13 ON7 sing 321 n n N1 C23 ON7 sing 322 n y C24 C23 ON7 doub 323 n y C24 C30 ON7 sing 324 n n C30 C31 ON7 sing 325 n n C31 O7 ON7 doub 326 n n C31 O6 ON7 sing 327 n n C29 H1 ON7 sing 328 n n C29 H2 ON7 sing 329 n n C29 H3 ON7 sing 330 n n C30 H4 ON7 sing 331 n n C30 H5 ON7 sing 332 n n O6 H6 ON7 sing 333 n n C23 H7 ON7 sing 334 n n C26 H8 ON7 sing 335 n n C13 H9 ON7 sing 336 n n C13 H10 ON7 sing 337 n n C8 H11 ON7 sing 338 n n C6 H12 ON7 sing 339 n n O2 H13 ON7 sing 340 n n C2 H14 ON7 sing 341 n n C5 H15 ON7 sing 342 n n C11 H16 ON7 sing 343 n n C11 H17 ON7 sing 344 n n C11 H18 ON7 sing 345 n n C10 H19 ON7 sing 346 n n C10 H20 ON7 sing 347 n n C10 H21 ON7 sing 348 n n C4 H22 ON7 sing 349 n n C4 H23 ON7 sing 350 n n C4 H24 ON7 sing 351 n n C12 H25 ON7 sing 352 n n C12 H26 ON7 sing 353 n n C14 H27 ON7 sing 354 n n C16 H28 ON7 sing 355 n n C16 H29 ON7 sing 356 n n C19 H30 ON7 sing 357 n n C20 H31 ON7 sing 358 n n C21 H32 ON7 sing 359 n n C22 H33 ON7 sing 360 n n C15 H34 ON7 sing 361 n n C15 H35 ON7 sing 362 n n # _atom_sites.entry_id 4Z34 _atom_sites.fract_transf_matrix[1][1] 0.029172 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008917 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006467 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ON7 A 1 2001 2001 ON7 OL4 . C 3 1WV A 1 2002 2002 1WV OLB . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O5 ON7 . . . B 2 -8.538 -28.661 53.158 1 57.59 ? O5 ON7 2001 A 1 HETATM 2 C C28 ON7 . . . B 2 -7.476 -29.205 52.843 1 57.42 ? C28 ON7 2001 A 1 HETATM 3 O O4 ON7 . . . B 2 -7.451 -30.351 52.064 1 58 ? O4 ON7 2001 A 1 HETATM 4 C C29 ON7 . . . B 2 -8.634 -30.958 51.62 1 58.56 ? C29 ON7 2001 A 1 HETATM 5 C C25 ON7 . . . B 2 -6.126 -28.784 53.145 1 56.22 ? C25 ON7 2001 A 1 HETATM 6 C C24 ON7 . . . B 2 -4.98 -29.564 53.542 1 57.22 ? C24 ON7 2001 A 1 HETATM 7 C C30 ON7 . . . B 2 -4.871 -31.028 53.759 1 61.22 ? C30 ON7 2001 A 1 HETATM 8 C C31 ON7 . . . B 2 -4.85 -31.453 55.282 1 64.92 ? C31 ON7 2001 A 1 HETATM 9 O O7 ON7 . . . B 2 -5.416 -32.537 55.557 1 66.6 ? O7 ON7 2001 A 1 HETATM 10 O O6 ON7 . . . B 2 -4.272 -30.707 56.118 1 65.7 ? O6 ON7 2001 A 1 HETATM 11 C C23 ON7 . . . B 2 -3.937 -28.664 53.693 1 54.18 ? C23 ON7 2001 A 1 HETATM 12 C C26 ON7 . . . B 2 -5.744 -27.457 53.068 1 53.93 ? C26 ON7 2001 A 1 HETATM 13 N N1 ON7 . . . B 2 -4.414 -27.383 53.409 1 51.9 ? N1 ON7 2001 A 1 HETATM 14 C C13 ON7 . . . B 2 -3.67 -26.134 53.514 1 48.88 ? C13 ON7 2001 A 1 HETATM 15 C C8 ON7 . . . B 2 -3.003 -25.572 52.228 1 45.75 ? C8 ON7 2001 A 1 HETATM 16 C C6 ON7 . . . B 2 -2.015 -26.601 51.51 1 43.44 ? C6 ON7 2001 A 1 HETATM 17 O O2 ON7 . . . B 2 -1.001 -27.045 52.382 1 41.53 ? O2 ON7 2001 A 1 HETATM 18 C C3 ON7 . . . B 2 -1.342 -25.966 50.303 1 42.96 ? C3 ON7 2001 A 1 HETATM 19 C C2 ON7 . . . B 2 -1.807 -26.32 49.027 1 43.01 ? C2 ON7 2001 A 1 HETATM 20 C C5 ON7 . . . B 2 -0.293 -25.05 50.454 1 42.97 ? C5 ON7 2001 A 1 HETATM 21 C C7 ON7 . . . B 2 0.303 -24.477 49.308 1 42.84 ? C7 ON7 2001 A 1 HETATM 22 O O3 ON7 . . . B 2 1.337 -23.56 49.438 1 44.06 ? O3 ON7 2001 A 1 HETATM 23 C C11 ON7 . . . B 2 2.623 -24.082 49.797 1 44.38 ? C11 ON7 2001 A 1 HETATM 24 C C9 ON7 . . . B 2 -0.143 -24.796 47.993 1 41.84 ? C9 ON7 2001 A 1 HETATM 25 C C10 ON7 . . . B 2 0.474 -24.174 46.791 1 40.74 ? C10 ON7 2001 A 1 HETATM 26 C C1 ON7 . . . B 2 -1.229 -25.736 47.883 1 42.26 ? C1 ON7 2001 A 1 HETATM 27 O O1 ON7 . . . B 2 -1.659 -26.02 46.591 1 41.12 ? O1 ON7 2001 A 1 HETATM 28 C C4 ON7 . . . B 2 -3.005 -25.853 46.248 1 39.88 ? C4 ON7 2001 A 1 HETATM 29 C C12 ON7 . . . B 2 -4.033 -24.989 51.226 1 44.98 ? C12 ON7 2001 A 1 HETATM 30 C C14 ON7 . . . B 2 -4.223 -23.445 51.197 1 44.41 ? C14 ON7 2001 A 1 HETATM 31 C C16 ON7 . . . B 2 -2.991 -22.647 50.662 1 43.72 ? C16 ON7 2001 A 1 HETATM 32 C C18 ON7 . . . B 2 -3.234 -22.517 49.196 1 43.31 ? C18 ON7 2001 A 1 HETATM 33 C C19 ON7 . . . B 2 -2.336 -22.167 48.187 1 42.59 ? C19 ON7 2001 A 1 HETATM 34 C C20 ON7 . . . B 2 -2.766 -22.209 46.841 1 42.08 ? C20 ON7 2001 A 1 HETATM 35 C C21 ON7 . . . B 2 -4.072 -22.598 46.529 1 43.27 ? C21 ON7 2001 A 1 HETATM 36 C C22 ON7 . . . B 2 -4.993 -22.945 47.56 1 44.65 ? C22 ON7 2001 A 1 HETATM 37 C C17 ON7 . . . B 2 -4.558 -22.882 48.893 1 44.19 ? C17 ON7 2001 A 1 HETATM 38 C C15 ON7 . . . B 2 -5.324 -23.128 50.154 1 44.74 ? C15 ON7 2001 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 317 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 38 #