data_4Z35 # _model_server_result.job_id p35LHeR87KzDX52CtX5hSg _model_server_result.datetime_utc '2024-11-24 02:12:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4z35 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":2001}' # _entry.id 4Z35 # _exptl.entry_id 4Z35 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 563.638 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '3-{1-[(2S,3S)-3-(4-acetyl-3,5-dimethoxyphenyl)-2-(2,3-dihydro-1H-inden-2-ylmethyl)-3-hydroxypropyl]-4-(methoxycarbonyl)-1H-pyrrol-3-yl}propanoic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4Z35 _cell.length_a 34.61 _cell.length_b 112.4 _cell.length_c 155.67 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4Z35 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 42 A CYS 24 1_555 A SG CYS 208 A CYS 190 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf2 A SG CYS 206 A CYS 188 1_555 A SG CYS 213 A CYS 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf3 A SG CYS 393 A CYS 284 1_555 A SG CYS 396 A CYS 287 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? # _chem_comp.formula 'C32 H37 N O8' _chem_comp.formula_weight 563.638 _chem_comp.id ON9 _chem_comp.mon_nstd_flag . _chem_comp.name '3-{1-[(2S,3S)-3-(4-acetyl-3,5-dimethoxyphenyl)-2-(2,3-dihydro-1H-inden-2-ylmethyl)-3-hydroxypropyl]-4-(methoxycarbonyl)-1H-pyrrol-3-yl}propanoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ONO-9910539 # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C30 C29 ON9 sing 289 n n C28 O5 ON9 sing 290 n n C15 C16 ON9 doub 291 n y C15 C14 ON9 sing 292 n y O5 C2 ON9 sing 293 n n C16 C17 ON9 sing 294 n y O6 C29 ON9 doub 295 n n C29 C1 ON9 sing 296 n n C14 C12 ON9 doub 297 n y C2 C1 ON9 doub 298 n y C2 C3 ON9 sing 299 n y C17 C11 ON9 doub 300 n y C1 C ON9 sing 301 n y C12 C11 ON9 sing 302 n y C12 C13 ON9 sing 303 n n C3 C4 ON9 doub 304 n y C11 C10 ON9 sing 305 n n C O7 ON9 sing 306 n n C C5 ON9 doub 307 n y O7 C31 ON9 sing 308 n n C13 C9 ON9 sing 309 n n C4 C5 ON9 sing 310 n y C4 C6 ON9 sing 311 n n C10 C9 ON9 sing 312 n n C27 O3 ON9 sing 313 n n C9 C8 ON9 sing 314 n n C8 C7 ON9 sing 315 n n C6 C7 ON9 sing 316 n n C6 O4 ON9 sing 317 n n O3 C26 ON9 sing 318 n n C7 C18 ON9 sing 319 n n C26 C20 ON9 sing 320 n n C26 O2 ON9 doub 321 n n C19 C20 ON9 doub 322 n y C19 N ON9 sing 323 n y C20 C21 ON9 sing 324 n y N C18 ON9 sing 325 n n N C22 ON9 sing 326 n y C21 C22 ON9 doub 327 n y C21 C23 ON9 sing 328 n n C23 C24 ON9 sing 329 n n C24 C25 ON9 sing 330 n n C25 O ON9 doub 331 n n C25 O1 ON9 sing 332 n n C30 H1 ON9 sing 333 n n C30 H2 ON9 sing 334 n n C30 H3 ON9 sing 335 n n C31 H4 ON9 sing 336 n n C31 H5 ON9 sing 337 n n C31 H6 ON9 sing 338 n n C28 H7 ON9 sing 339 n n C28 H8 ON9 sing 340 n n C28 H9 ON9 sing 341 n n C27 H10 ON9 sing 342 n n C27 H11 ON9 sing 343 n n C27 H12 ON9 sing 344 n n C23 H13 ON9 sing 345 n n C23 H14 ON9 sing 346 n n C24 H15 ON9 sing 347 n n C24 H16 ON9 sing 348 n n C22 H17 ON9 sing 349 n n C3 H18 ON9 sing 350 n n C6 H19 ON9 sing 351 n n C5 H20 ON9 sing 352 n n C8 H21 ON9 sing 353 n n C8 H22 ON9 sing 354 n n C7 H23 ON9 sing 355 n n O1 H24 ON9 sing 356 n n C9 H25 ON9 sing 357 n n C13 H26 ON9 sing 358 n n C13 H27 ON9 sing 359 n n C10 H28 ON9 sing 360 n n C10 H29 ON9 sing 361 n n C17 H30 ON9 sing 362 n n O4 H31 ON9 sing 363 n n C16 H32 ON9 sing 364 n n C15 H33 ON9 sing 365 n n C14 H34 ON9 sing 366 n n C18 H35 ON9 sing 367 n n C18 H36 ON9 sing 368 n n C19 H37 ON9 sing 369 n n # _atom_sites.entry_id 4Z35 _atom_sites.fract_transf_matrix[1][1] 0.028893 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008897 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006424 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ON9 A 1 2001 2001 ON9 O33 . C 3 1WV A 1 2002 2002 1WV OLB . D 4 HOH A 1 2101 2005 HOH HOH . D 4 HOH A 2 2102 2003 HOH HOH . D 4 HOH A 3 2103 2004 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C30 ON9 . . . B 2 1.461 -24.928 46.339 1 56.66 ? C30 ON9 2001 A 1 HETATM 2 C C31 ON9 . . . B 2 2.795 -24.553 50.198 1 59.61 ? C31 ON9 2001 A 1 HETATM 3 C C28 ON9 . . . B 2 -2.932 -26.05 46.634 1 59.11 ? C28 ON9 2001 A 1 HETATM 4 C C27 ON9 . . . B 2 -7.385 -30.995 50.927 1 83.15 ? C27 ON9 2001 A 1 HETATM 5 C C29 ON9 . . . B 2 0.704 -24.102 47.344 1 57.72 ? C29 ON9 2001 A 1 HETATM 6 C C23 ON9 . . . B 2 -5.227 -31.341 53.761 1 81.13 ? C23 ON9 2001 A 1 HETATM 7 C C24 ON9 . . . B 2 -4.345 -31.825 54.926 1 82.69 ? C24 ON9 2001 A 1 HETATM 8 C C25 ON9 . . . B 2 -4.796 -31.267 56.265 1 85.43 ? C25 ON9 2001 A 1 HETATM 9 C C26 ON9 . . . B 2 -7.782 -29.596 52.962 1 82.99 ? C26 ON9 2001 A 1 HETATM 10 C C21 ON9 . . . B 2 -5.253 -29.857 53.562 1 79.53 ? C21 ON9 2001 A 1 HETATM 11 C C1 ON9 . . . B 2 0.02 -24.853 48.454 1 59.74 ? C1 ON9 2001 A 1 HETATM 12 O O6 ON9 . . . B 2 0.658 -22.884 47.272 1 56.76 ? O6 ON9 2001 A 1 HETATM 13 O O5 ON9 . . . B 2 -1.546 -25.897 46.884 1 60.07 ? O5 ON9 2001 A 1 HETATM 14 C C2 ON9 . . . B 2 -1.102 -25.7 48.2 1 60.94 ? C2 ON9 2001 A 1 HETATM 15 C C20 ON9 . . . B 2 -6.405 -29.079 53.171 1 80.29 ? C20 ON9 2001 A 1 HETATM 16 C C22 ON9 . . . B 2 -4.205 -28.96 53.735 1 77.54 ? C22 ON9 2001 A 1 HETATM 17 C C3 ON9 . . . B 2 -1.77 -26.355 49.261 1 62.59 ? C3 ON9 2001 A 1 HETATM 18 O O3 ON9 . . . B 2 -8.209 -30.462 51.949 1 84 ? O3 ON9 2001 A 1 HETATM 19 C C6 ON9 . . . B 2 -2.232 -26.808 51.674 1 66.09 ? C6 ON9 2001 A 1 HETATM 20 O O2 ON9 . . . B 2 -8.719 -29.282 53.686 1 84.03 ? O2 ON9 2001 A 1 HETATM 21 C C5 ON9 . . . B 2 -0.248 -25.356 50.878 1 61.97 ? C5 ON9 2001 A 1 HETATM 22 C C8 ON9 . . . B 2 -4.219 -25.115 51.525 1 70.73 ? C8 ON9 2001 A 1 HETATM 23 C C7 ON9 . . . B 2 -3.176 -25.785 52.445 1 70.3 ? C7 ON9 2001 A 1 HETATM 24 C C11 ON9 . . . B 2 -3.272 -22.754 49.327 1 70.13 ? C11 ON9 2001 A 1 HETATM 25 C C4 ON9 . . . B 2 -1.364 -26.168 50.592 1 63.56 ? C4 ON9 2001 A 1 HETATM 26 O O1 ON9 . . . B 2 -5.558 -32.029 57.088 1 87.64 ? O1 ON9 2001 A 1 HETATM 27 C C9 ON9 . . . B 2 -4.247 -23.57 51.376 1 71.07 ? C9 ON9 2001 A 1 HETATM 28 C C13 ON9 . . . B 2 -5.356 -23.221 50.354 1 71.55 ? C13 ON9 2001 A 1 HETATM 29 C C10 ON9 . . . B 2 -2.961 -22.923 50.776 1 70.1 ? C10 ON9 2001 A 1 HETATM 30 C C12 ON9 . . . B 2 -4.616 -23.053 49.073 1 70.59 ? C12 ON9 2001 A 1 HETATM 31 C C17 ON9 . . . B 2 -2.404 -22.428 48.278 1 69.88 ? C17 ON9 2001 A 1 HETATM 32 O O4 ON9 . . . B 2 -1.389 -27.515 52.54 1 65.42 ? O4 ON9 2001 A 1 HETATM 33 C C16 ON9 . . . B 2 -2.901 -22.443 46.95 1 68.96 ? C16 ON9 2001 A 1 HETATM 34 C C15 ON9 . . . B 2 -4.24 -22.789 46.692 1 69.17 ? C15 ON9 2001 A 1 HETATM 35 C C14 ON9 . . . B 2 -5.118 -23.099 47.762 1 70.41 ? C14 ON9 2001 A 1 HETATM 36 C C18 ON9 . . . B 2 -3.863 -26.448 53.696 1 74.23 ? C18 ON9 2001 A 1 HETATM 37 C C19 ON9 . . . B 2 -6.005 -27.74 53.116 1 78.28 ? C19 ON9 2001 A 1 HETATM 38 O O7 ON9 . . . B 2 1.534 -23.898 50.103 1 60.05 ? O7 ON9 2001 A 1 HETATM 39 C C ON9 . . . B 2 0.44 -24.71 49.819 1 60.44 ? C ON9 2001 A 1 HETATM 40 N N ON9 . . . B 2 -4.672 -27.669 53.477 1 76.45 ? N ON9 2001 A 1 HETATM 41 O O ON9 . . . B 2 -4.526 -30.161 56.698 1 85.65 -1 O ON9 2001 A 1 # _model_server_stats.io_time_ms 33 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 539 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 41 #