data_4Z36 # _model_server_result.job_id VNTUOHBBHLCDuASY0ER_TQ _model_server_result.datetime_utc '2024-12-06 11:03:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4z36 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":2000}' # _entry.id 4Z36 # _exptl.entry_id 4Z36 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 518.597 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '1-(4-{[(2S,3R)-2-(2,3-dihydro-1H-inden-2-yloxy)-3-(3,5-dimethoxy-4-methylphenyl)-3-hydroxypropyl]oxy}phenyl)cyclopropan ecarboxylic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4Z36 _cell.length_a 34.35 _cell.length_b 111.93 _cell.length_c 153.96 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4Z36 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 42 A CYS 24 1_555 A SG CYS 208 A CYS 190 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf2 A SG CYS 206 A CYS 188 1_555 A SG CYS 213 A CYS 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf3 A SG CYS 222 A CYS 204 1_555 A SG CYS 386 A CYS 282 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf4 A SG CYS 388 A CYS 284 1_555 A SG CYS 391 A CYS 287 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? # _chem_comp.formula 'C31 H34 O7' _chem_comp.formula_weight 518.597 _chem_comp.id ON3 _chem_comp.mon_nstd_flag . _chem_comp.name '1-(4-{[(2S,3R)-2-(2,3-dihydro-1H-inden-2-yloxy)-3-(3,5-dimethoxy-4-methylphenyl)-3-hydroxypropyl]oxy}phenyl)cyclopropan ecarboxylic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ONO-3080573 # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C13 O17 ON3 sing 289 n n O17 C3 ON3 sing 290 n n C42 C41 ON3 doub 291 n y C42 C43 ON3 sing 292 n y C9 C4 ON3 sing 293 n n C41 C40 ON3 sing 294 n y C43 C38 ON3 doub 295 n y C3 C4 ON3 doub 296 n y C3 C2 ON3 sing 297 n y C4 C5 ON3 sing 298 n y C40 C39 ON3 doub 299 n y C2 C1 ON3 doub 300 n y C38 C39 ON3 sing 301 n y C38 C31 ON3 sing 302 n n C39 C32 ON3 sing 303 n n C5 O18 ON3 sing 304 n n C5 C6 ON3 doub 305 n y O18 C19 ON3 sing 306 n n C1 C6 ON3 sing 307 n y C1 C23 ON3 sing 308 n n C31 C30 ON3 sing 309 n n C63 C64 ON3 sing 310 n n C63 C62 ON3 sing 311 n n C32 C30 ON3 sing 312 n n C64 C62 ON3 sing 313 n n O29 C30 ON3 sing 314 n n O29 C27 ON3 sing 315 n n C23 C27 ON3 sing 316 n n C23 O25 ON3 sing 317 n n C62 C52 ON3 sing 318 n n C62 C69 ON3 sing 319 n n C53 C52 ON3 doub 320 n y C53 C54 ON3 sing 321 n y C27 C48 ON3 sing 322 n n C52 C57 ON3 sing 323 n y C54 C55 ON3 doub 324 n y C57 C56 ON3 doub 325 n y O70 C69 ON3 doub 326 n n C55 C56 ON3 sing 327 n y C55 O51 ON3 sing 328 n n C69 O71 ON3 sing 329 n n O51 C48 ON3 sing 330 n n C2 H1 ON3 sing 331 n n C6 H2 ON3 sing 332 n n C9 H3 ON3 sing 333 n n C9 H4 ON3 sing 334 n n C9 H5 ON3 sing 335 n n C13 H6 ON3 sing 336 n n C13 H7 ON3 sing 337 n n C13 H8 ON3 sing 338 n n C19 H9 ON3 sing 339 n n C19 H10 ON3 sing 340 n n C19 H11 ON3 sing 341 n n C23 H12 ON3 sing 342 n n O25 H13 ON3 sing 343 n n C27 H14 ON3 sing 344 n n C30 H15 ON3 sing 345 n n C31 H16 ON3 sing 346 n n C31 H17 ON3 sing 347 n n C32 H18 ON3 sing 348 n n C32 H19 ON3 sing 349 n n C40 H20 ON3 sing 350 n n C41 H21 ON3 sing 351 n n C42 H22 ON3 sing 352 n n C43 H23 ON3 sing 353 n n C48 H24 ON3 sing 354 n n C48 H25 ON3 sing 355 n n C53 H26 ON3 sing 356 n n C54 H27 ON3 sing 357 n n C56 H28 ON3 sing 358 n n C57 H29 ON3 sing 359 n n C63 H30 ON3 sing 360 n n C63 H31 ON3 sing 361 n n C64 H32 ON3 sing 362 n n C64 H33 ON3 sing 363 n n O71 H34 ON3 sing 364 n n # _atom_sites.entry_id 4Z36 _atom_sites.fract_transf_matrix[1][1] 0.029112 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008934 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006495 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ON3 A 1 2000 2000 ON3 ESO . C 3 1WV A 1 2001 2001 1WV OLB . D 4 HOH A 1 2101 2004 HOH HOH . D 4 HOH A 2 2102 2002 HOH HOH . D 4 HOH A 3 2103 2003 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 ON3 . . . B 2 -0.867 -25.698 49.741 1 61.53 ? C1 ON3 2000 A 1 HETATM 2 C C2 ON3 . . . B 2 -1.404 -26 48.473 1 60.87 ? C2 ON3 2000 A 1 HETATM 3 C C3 ON3 . . . B 2 -0.854 -25.392 47.311 1 60.48 ? C3 ON3 2000 A 1 HETATM 4 C C4 ON3 . . . B 2 0.251 -24.481 47.39 1 60.48 ? C4 ON3 2000 A 1 HETATM 5 C C5 ON3 . . . B 2 0.781 -24.212 48.705 1 61.1 ? C5 ON3 2000 A 1 HETATM 6 C C6 ON3 . . . B 2 0.212 -24.811 49.858 1 61.6 ? C6 ON3 2000 A 1 HETATM 7 C C9 ON3 . . . B 2 0.782 -23.847 46.135 1 59.91 ? C9 ON3 2000 A 1 HETATM 8 C C13 ON3 . . . B 2 -2.745 -26.058 45.943 1 59.92 ? C13 ON3 2000 A 1 HETATM 9 O O17 ON3 . . . B 2 -1.377 -25.678 46.033 1 60.11 ? O17 ON3 2000 A 1 HETATM 10 O O18 ON3 . . . B 2 1.863 -23.357 48.762 1 61.18 ? O18 ON3 2000 A 1 HETATM 11 C C19 ON3 . . . B 2 3.152 -23.882 49.055 1 61.15 ? C19 ON3 2000 A 1 HETATM 12 C C23 ON3 . . . B 2 -1.509 -26.392 50.932 1 62.61 ? C23 ON3 2000 A 1 HETATM 13 O O25 ON3 . . . B 2 -0.558 -26.746 51.902 1 63.16 ? O25 ON3 2000 A 1 HETATM 14 C C27 ON3 . . . B 2 -2.683 -25.607 51.626 1 63.48 ? C27 ON3 2000 A 1 HETATM 15 O O29 ON3 . . . B 2 -3.566 -25.022 50.68 1 63.39 ? O29 ON3 2000 A 1 HETATM 16 C C30 ON3 . . . B 2 -3.888 -23.64 50.738 1 63.58 ? C30 ON3 2000 A 1 HETATM 17 C C31 ON3 . . . B 2 -5.168 -23.486 49.857 1 63.44 ? C31 ON3 2000 A 1 HETATM 18 C C32 ON3 . . . B 2 -2.837 -22.7 50.059 1 63.3 ? C32 ON3 2000 A 1 HETATM 19 C C38 ON3 . . . B 2 -4.603 -23.15 48.516 1 62.8 ? C38 ON3 2000 A 1 HETATM 20 C C39 ON3 . . . B 2 -3.269 -22.69 48.639 1 62.69 ? C39 ON3 2000 A 1 HETATM 21 C C40 ON3 . . . B 2 -2.525 -22.31 47.518 1 62.03 ? C40 ON3 2000 A 1 HETATM 22 C C41 ON3 . . . B 2 -3.137 -22.399 46.246 1 61.51 ? C41 ON3 2000 A 1 HETATM 23 C C42 ON3 . . . B 2 -4.46 -22.858 46.115 1 61.97 ? C42 ON3 2000 A 1 HETATM 24 C C43 ON3 . . . B 2 -5.211 -23.24 47.259 1 62.55 ? C43 ON3 2000 A 1 HETATM 25 C C48 ON3 . . . B 2 -3.394 -26.452 52.73 1 64.16 ? C48 ON3 2000 A 1 HETATM 26 O O51 ON3 . . . B 2 -4.803 -26.34 52.682 1 65 ? O51 ON3 2000 A 1 HETATM 27 C C52 ON3 . . . B 2 -7.369 -29.555 51.69 1 66.54 ? C52 ON3 2000 A 1 HETATM 28 C C53 ON3 . . . B 2 -7.763 -28.198 51.614 1 66.37 ? C53 ON3 2000 A 1 HETATM 29 C C54 ON3 . . . B 2 -6.875 -27.156 51.939 1 65.95 ? C54 ON3 2000 A 1 HETATM 30 C C55 ON3 . . . B 2 -5.563 -27.468 52.36 1 65.5 ? C55 ON3 2000 A 1 HETATM 31 C C56 ON3 . . . B 2 -5.139 -28.827 52.446 1 65.62 ? C56 ON3 2000 A 1 HETATM 32 C C57 ON3 . . . B 2 -6.041 -29.851 52.111 1 65.89 ? C57 ON3 2000 A 1 HETATM 33 C C62 ON3 . . . B 2 -8.319 -30.653 51.365 1 67.55 ? C62 ON3 2000 A 1 HETATM 34 C C63 ON3 . . . B 2 -8.926 -30.818 49.972 1 67.26 ? C63 ON3 2000 A 1 HETATM 35 C C64 ON3 . . . B 2 -7.885 -31.797 50.449 1 67.14 ? C64 ON3 2000 A 1 HETATM 36 C C69 ON3 . . . B 2 -9.237 -31.026 52.572 1 69.21 ? C69 ON3 2000 A 1 HETATM 37 O O70 ON3 . . . B 2 -10.476 -31.098 52.37 1 69.85 ? O70 ON3 2000 A 1 HETATM 38 O O71 ON3 . . . B 2 -8.671 -31.227 53.673 1 69.76 -1 O71 ON3 2000 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 375 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 38 #