data_4Z3F # _model_server_result.job_id njXmcaH0ScFBDuwzc8NHgg _model_server_result.datetime_utc '2024-11-28 11:50:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4z3f # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":208}' # _entry.id 4Z3F # _exptl.entry_id 4Z3F _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 96.05 _cell.angle_gamma 90 _cell.entry_id 4Z3F _cell.length_a 45.11 _cell.length_b 53.38 _cell.length_c 48.82 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4Z3F _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 GAL BGC C1 O1 . O4 HO4 . sing 2 ? 2 3 2 GLA GAL C1 O1 . O4 HO4 . sing 3 ? 2 4 3 NGA GLA C1 O1 . O3 HO3 . sing 4 ? 2 5 4 GAL NGA C1 O1 . O3 HO3 . sing 5 ? 2 6 5 SIA GAL C2 O2 . O3 HO3 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B BGC 1 B 1 BGC A 204 BGC 2 n B GAL 2 B 2 GAL A 203 GAL 2 n B GLA 3 B 3 GLA A 202 GLA 2 n B NGA 4 B 4 NGA A 201 NGA 2 n B GAL 5 B 5 GAL A 200 GAL 2 n B SIA 6 B 6 SIA A 199 SLB # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 46 A CYS 44 1_555 A SG CYS 120 A CYS 118 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? covale ? covale1 B O4 BGC . B BGC 1 1_555 B C1 GAL . B GAL 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? covale ? covale2 B O4 GAL . B GAL 2 1_555 B C1 GLA . B GLA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale3 B O3 GLA . B GLA 3 1_555 B C1 NGA . B NGA 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.42 ? covale ? covale4 B O3 NGA . B NGA 4 1_555 B C1 GAL . B GAL 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale5 B O3 GAL . B GAL 5 1_555 B C2 SIA . B SIA 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.375 ? metalc ? metalc1 A OE1 GLU 50 A GLU 48 1_555 C ZN ZN . A ZN 207 1_554 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? metalc ? metalc2 A NE2 HIS 85 A HIS 83 1_555 C ZN ZN . A ZN 207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.092 ? metalc ? metalc3 A OD2 ASP 145 A ASP 143 1_555 D ZN ZN . A ZN 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.379 ? metalc ? metalc4 C ZN ZN . A ZN 207 1_555 E O HOH . A HOH 371 1_556 ? ? ? ? ? ? ? ? ? ? ? ? 1.882 ? metalc ? metalc5 C ZN ZN . A ZN 207 1_555 E O HOH . A HOH 391 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.17 ? metalc ? metalc6 C ZN ZN . A ZN 207 1_555 E O HOH . A HOH 445 1_556 ? ? ? ? ? ? ? ? ? ? ? ? 2.212 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4Z3F _atom_sites.fract_transf_matrix[1][1] 0.022168 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00235 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018734 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.020598 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 ZN A 1 207 1 ZN ZN . D 3 ZN A 1 208 1 ZN ZN . E 4 HOH A 1 301 75 HOH HOH . E 4 HOH A 2 302 18 HOH HOH . E 4 HOH A 3 303 54 HOH HOH . E 4 HOH A 4 304 76 HOH HOH . E 4 HOH A 5 305 48 HOH HOH . E 4 HOH A 6 306 44 HOH HOH . E 4 HOH A 7 307 148 HOH HOH . E 4 HOH A 8 308 22 HOH HOH . E 4 HOH A 9 309 61 HOH HOH . E 4 HOH A 10 310 11 HOH HOH . E 4 HOH A 11 311 108 HOH HOH . E 4 HOH A 12 312 112 HOH HOH . E 4 HOH A 13 313 6 HOH HOH . E 4 HOH A 14 314 128 HOH HOH . E 4 HOH A 15 315 78 HOH HOH . E 4 HOH A 16 316 122 HOH HOH . E 4 HOH A 17 317 85 HOH HOH . E 4 HOH A 18 318 59 HOH HOH . E 4 HOH A 19 319 46 HOH HOH . E 4 HOH A 20 320 64 HOH HOH . E 4 HOH A 21 321 60 HOH HOH . E 4 HOH A 22 322 4 HOH HOH . E 4 HOH A 23 323 125 HOH HOH . E 4 HOH A 24 324 66 HOH HOH . E 4 HOH A 25 325 45 HOH HOH . E 4 HOH A 26 326 183 HOH HOH . E 4 HOH A 27 327 61 HOH HOH . E 4 HOH A 28 328 28 HOH HOH . E 4 HOH A 29 329 55 HOH HOH . E 4 HOH A 30 330 52 HOH HOH . E 4 HOH A 31 331 121 HOH HOH . E 4 HOH A 32 332 26 HOH HOH . E 4 HOH A 33 333 71 HOH HOH . E 4 HOH A 34 334 16 HOH HOH . E 4 HOH A 35 335 15 HOH HOH . E 4 HOH A 36 336 72 HOH HOH . E 4 HOH A 37 337 39 HOH HOH . E 4 HOH A 38 338 65 HOH HOH . E 4 HOH A 39 339 167 HOH HOH . E 4 HOH A 40 340 35 HOH HOH . E 4 HOH A 41 341 153 HOH HOH . E 4 HOH A 42 342 1 HOH HOH . E 4 HOH A 43 343 98 HOH HOH . E 4 HOH A 44 344 126 HOH HOH . E 4 HOH A 45 345 51 HOH HOH . E 4 HOH A 46 346 129 HOH HOH . E 4 HOH A 47 347 134 HOH HOH . E 4 HOH A 48 348 60 HOH HOH . E 4 HOH A 49 349 25 HOH HOH . E 4 HOH A 50 350 54 HOH HOH . E 4 HOH A 51 351 30 HOH HOH . E 4 HOH A 52 352 37 HOH HOH . E 4 HOH A 53 353 21 HOH HOH . E 4 HOH A 54 354 68 HOH HOH . E 4 HOH A 55 355 91 HOH HOH . E 4 HOH A 56 356 103 HOH HOH . E 4 HOH A 57 357 5 HOH HOH . E 4 HOH A 58 358 47 HOH HOH . E 4 HOH A 59 359 171 HOH HOH . E 4 HOH A 60 360 12 HOH HOH . E 4 HOH A 61 361 133 HOH HOH . E 4 HOH A 62 362 178 HOH HOH . E 4 HOH A 63 363 104 HOH HOH . E 4 HOH A 64 364 17 HOH HOH . E 4 HOH A 65 365 110 HOH HOH . E 4 HOH A 66 366 30 HOH HOH . E 4 HOH A 67 367 49 HOH HOH . E 4 HOH A 68 368 73 HOH HOH . E 4 HOH A 69 369 27 HOH HOH . E 4 HOH A 70 370 53 HOH HOH . E 4 HOH A 71 371 180 HOH HOH . E 4 HOH A 72 372 50 HOH HOH . E 4 HOH A 73 373 38 HOH HOH . E 4 HOH A 74 374 163 HOH HOH . E 4 HOH A 75 375 69 HOH HOH . E 4 HOH A 76 376 179 HOH HOH . E 4 HOH A 77 377 63 HOH HOH . E 4 HOH A 78 378 71 HOH HOH . E 4 HOH A 79 379 6 HOH HOH . E 4 HOH A 80 380 124 HOH HOH . E 4 HOH A 81 381 130 HOH HOH . E 4 HOH A 82 382 28 HOH HOH . E 4 HOH A 83 383 81 HOH HOH . E 4 HOH A 84 384 47 HOH HOH . E 4 HOH A 85 385 48 HOH HOH . E 4 HOH A 86 386 131 HOH HOH . E 4 HOH A 87 387 63 HOH HOH . E 4 HOH A 88 388 44 HOH HOH . E 4 HOH A 89 389 156 HOH HOH . E 4 HOH A 90 390 32 HOH HOH . E 4 HOH A 91 391 182 HOH HOH . E 4 HOH A 92 392 10 HOH HOH . E 4 HOH A 93 393 19 HOH HOH . E 4 HOH A 94 394 1 HOH HOH . E 4 HOH A 95 395 5 HOH HOH . E 4 HOH A 96 396 154 HOH HOH . E 4 HOH A 97 397 41 HOH HOH . E 4 HOH A 98 398 82 HOH HOH . E 4 HOH A 99 399 158 HOH HOH . E 4 HOH A 100 400 57 HOH HOH . E 4 HOH A 101 401 80 HOH HOH . E 4 HOH A 102 402 40 HOH HOH . E 4 HOH A 103 403 42 HOH HOH . E 4 HOH A 104 404 70 HOH HOH . E 4 HOH A 105 405 70 HOH HOH . E 4 HOH A 106 406 3 HOH HOH . E 4 HOH A 107 407 26 HOH HOH . E 4 HOH A 108 408 49 HOH HOH . E 4 HOH A 109 409 117 HOH HOH . E 4 HOH A 110 410 19 HOH HOH . E 4 HOH A 111 411 46 HOH HOH . E 4 HOH A 112 412 72 HOH HOH . E 4 HOH A 113 413 21 HOH HOH . E 4 HOH A 114 414 18 HOH HOH . E 4 HOH A 115 415 15 HOH HOH . E 4 HOH A 116 416 139 HOH HOH . E 4 HOH A 117 417 77 HOH HOH . E 4 HOH A 118 418 22 HOH HOH . E 4 HOH A 119 419 107 HOH HOH . E 4 HOH A 120 420 69 HOH HOH . E 4 HOH A 121 421 140 HOH HOH . E 4 HOH A 122 422 187 HOH HOH . E 4 HOH A 123 423 68 HOH HOH . E 4 HOH A 124 424 36 HOH HOH . E 4 HOH A 125 425 31 HOH HOH . E 4 HOH A 126 426 177 HOH HOH . E 4 HOH A 127 427 56 HOH HOH . E 4 HOH A 128 428 164 HOH HOH . E 4 HOH A 129 429 67 HOH HOH . E 4 HOH A 130 430 37 HOH HOH . E 4 HOH A 131 431 127 HOH HOH . E 4 HOH A 132 432 123 HOH HOH . E 4 HOH A 133 433 43 HOH HOH . E 4 HOH A 134 434 99 HOH HOH . E 4 HOH A 135 435 64 HOH HOH . E 4 HOH A 136 436 168 HOH HOH . E 4 HOH A 137 437 165 HOH HOH . E 4 HOH A 138 438 52 HOH HOH . E 4 HOH A 139 439 113 HOH HOH . E 4 HOH A 140 440 152 HOH HOH . E 4 HOH A 141 441 3 HOH HOH . E 4 HOH A 142 442 32 HOH HOH . E 4 HOH A 143 443 27 HOH HOH . E 4 HOH A 144 444 57 HOH HOH . E 4 HOH A 145 445 181 HOH HOH . E 4 HOH A 146 446 115 HOH HOH . E 4 HOH A 147 447 170 HOH HOH . E 4 HOH A 148 448 23 HOH HOH . E 4 HOH A 149 449 62 HOH HOH . E 4 HOH A 150 450 144 HOH HOH . E 4 HOH A 151 451 51 HOH HOH . E 4 HOH A 152 452 16 HOH HOH . E 4 HOH A 153 453 143 HOH HOH . E 4 HOH A 154 454 109 HOH HOH . E 4 HOH A 155 455 102 HOH HOH . E 4 HOH A 156 456 17 HOH HOH . E 4 HOH A 157 457 58 HOH HOH . E 4 HOH A 158 458 43 HOH HOH . E 4 HOH A 159 459 36 HOH HOH . E 4 HOH A 160 460 7 HOH HOH . E 4 HOH A 161 461 12 HOH HOH . E 4 HOH A 162 462 33 HOH HOH . E 4 HOH A 163 463 24 HOH HOH . E 4 HOH A 164 464 160 HOH HOH . E 4 HOH A 165 465 114 HOH HOH . E 4 HOH A 166 466 9 HOH HOH . E 4 HOH A 167 467 29 HOH HOH . E 4 HOH A 168 468 4 HOH HOH . E 4 HOH A 169 469 149 HOH HOH . E 4 HOH A 170 470 146 HOH HOH . E 4 HOH A 171 471 10 HOH HOH . E 4 HOH A 172 472 65 HOH HOH . E 4 HOH A 173 473 13 HOH HOH . E 4 HOH A 174 474 166 HOH HOH . E 4 HOH A 175 475 159 HOH HOH . E 4 HOH A 176 476 11 HOH HOH . E 4 HOH A 177 477 14 HOH HOH . E 4 HOH A 178 478 87 HOH HOH . E 4 HOH A 179 479 25 HOH HOH . E 4 HOH A 180 480 2 HOH HOH . E 4 HOH A 181 481 116 HOH HOH . E 4 HOH A 182 482 105 HOH HOH . E 4 HOH A 183 483 150 HOH HOH . E 4 HOH A 184 484 119 HOH HOH . E 4 HOH A 185 485 155 HOH HOH . E 4 HOH A 186 486 8 HOH HOH . E 4 HOH A 187 487 67 HOH HOH . E 4 HOH A 188 488 56 HOH HOH . E 4 HOH A 189 489 42 HOH HOH . E 4 HOH A 190 490 66 HOH HOH . E 4 HOH A 191 491 120 HOH HOH . E 4 HOH A 192 492 20 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 3 _atom_site.Cartn_x 29.875 _atom_site.Cartn_y 28.201 _atom_site.Cartn_z 29.574 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 44.2 _atom_site.pdbx_formal_charge 2 _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 208 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 414 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #