data_4Z42
#
_model_server_result.job_id            h_XVyt5fIMosE6VD5Cin4Q 
_model_server_result.datetime_utc      '2024-11-26 16:30:15' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4z42 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"R","auth_seq_id":602}' 
#
_entry.id    4Z42 
#
_exptl.entry_id    4Z42 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              58.693 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NICKEL (II) ION' 
_entity.pdbx_number_of_molecules    8 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            4Z42 
_cell.length_a            157.2 
_cell.length_b            157.2 
_cell.length_c            774.62 
_cell.Z_PDB               72 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4Z42 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        155 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'H 3 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    36-meric 
_pdbx_struct_assembly.oligomeric_count      36 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA 1 1 
A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA 1 2 
A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA 1 3 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_445 -y-1,x-y-1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 -78.6 -136.139193 0 
3 'crystal symmetry operation' 3_545 -x+y,-x-1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 78.6 -136.139193 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 M N N 
? 4 N N N 
? 4 O N N 
? 4 P N N 
? 4 Q N N 
? 4 R N N 
? 4 S N N 
? 4 T N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 C NE2 HIS 139 C HIS 139 1_555 N NI NI . C NI 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? 
metalc ? metalc2 C NE2 HIS 141 C HIS 141 1_555 N NI NI . C NI 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.538 ? 
metalc ? metalc3 C ND1 HIS 251 C HIS 251 1_555 M NI NI . C NI 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.485 ? 
metalc ? metalc4 C OD1 ASP 365 C ASP 365 1_555 N NI NI . C NI 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.224 ? 
metalc ? metalc5 C OD2 ASP 365 C ASP 365 1_555 N NI NI . C NI 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.272 ? 
metalc ? metalc6 F NE2 HIS 139 F HIS 139 1_555 P NI NI . F NI 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? 
metalc ? metalc7 F NE2 HIS 141 F HIS 141 1_555 P NI NI . F NI 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.651 ? 
metalc ? metalc8 F ND1 HIS 251 F HIS 251 1_555 O NI NI . F NI 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.254 ? 
metalc ? metalc9 F OD1 ASP 365 F ASP 365 1_555 P NI NI . F NI 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.226 ? 
metalc ? metalc10 F OD2 ASP 365 F ASP 365 1_555 P NI NI . F NI 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.272 ? 
metalc ? metalc11 I NE2 HIS 139 I HIS 139 1_555 R NI NI . I NI 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? 
metalc ? metalc12 I NE2 HIS 141 I HIS 141 1_555 R NI NI . I NI 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.501 ? 
metalc ? metalc13 I ND1 HIS 251 I HIS 251 1_555 Q NI NI . I NI 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.67 ? 
metalc ? metalc14 I OD1 ASP 365 I ASP 365 1_555 R NI NI . I NI 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.223 ? 
metalc ? metalc15 I OD2 ASP 365 I ASP 365 1_555 R NI NI . I NI 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.275 ? 
metalc ? metalc16 L NE2 HIS 139 L HIS 139 1_555 T NI NI . L NI 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? 
metalc ? metalc17 L NE2 HIS 141 L HIS 141 1_555 T NI NI . L NI 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.513 ? 
metalc ? metalc18 L ND1 HIS 251 L HIS 251 1_555 S NI NI . L NI 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
metalc ? metalc19 L NE2 HIS 277 L HIS 277 1_555 S NI NI . L NI 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.646 ? 
metalc ? metalc20 L OD1 ASP 365 L ASP 365 1_555 T NI NI . L NI 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.225 ? 
metalc ? metalc21 L OD2 ASP 365 L ASP 365 1_555 T NI NI . L NI 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.272 ? 
#
_chem_comp.formula           'Ni 2' 
_chem_comp.formula_weight    58.693 
_chem_comp.id                NI 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NICKEL (II) ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     4Z42 
_atom_sites.fract_transf_matrix[1][1]    0.006361 
_atom_sites.fract_transf_matrix[1][2]    0.003673 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007345 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.001291 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
M 4 NI C 1 601 574 NI NI . 
N 4 NI C 1 602 575 NI NI . 
O 4 NI F 1 601 574 NI NI . 
P 4 NI F 1 602 575 NI NI . 
Q 4 NI I 1 601 574 NI NI . 
R 4 NI I 1 602 575 NI NI . 
S 4 NI L 1 601 574 NI NI . 
T 4 NI L 1 602 575 NI NI . 
U 5 HOH B 1 201 89 HOH HOH . 
U 5 HOH B 2 202 88 HOH HOH . 
U 5 HOH B 3 203 115 HOH HOH . 
U 5 HOH B 4 204 97 HOH HOH . 
U 5 HOH B 5 205 110 HOH HOH . 
U 5 HOH B 6 206 90 HOH HOH . 
U 5 HOH B 7 207 87 HOH HOH . 
U 5 HOH B 8 208 91 HOH HOH . 
V 5 HOH C 1 701 28 HOH HOH . 
V 5 HOH C 2 702 99 HOH HOH . 
V 5 HOH C 3 703 66 HOH HOH . 
V 5 HOH C 4 704 98 HOH HOH . 
V 5 HOH C 5 705 65 HOH HOH . 
V 5 HOH C 6 706 95 HOH HOH . 
V 5 HOH C 7 707 71 HOH HOH . 
V 5 HOH C 8 708 44 HOH HOH . 
V 5 HOH C 9 709 68 HOH HOH . 
V 5 HOH C 10 710 70 HOH HOH . 
V 5 HOH C 11 711 57 HOH HOH . 
V 5 HOH C 12 712 69 HOH HOH . 
V 5 HOH C 13 713 67 HOH HOH . 
V 5 HOH C 14 714 45 HOH HOH . 
V 5 HOH C 15 715 100 HOH HOH . 
W 5 HOH D 1 201 109 HOH HOH . 
X 5 HOH E 1 201 104 HOH HOH . 
X 5 HOH E 2 202 106 HOH HOH . 
X 5 HOH E 3 203 101 HOH HOH . 
X 5 HOH E 4 204 105 HOH HOH . 
X 5 HOH E 5 205 102 HOH HOH . 
X 5 HOH E 6 206 77 HOH HOH . 
X 5 HOH E 7 207 75 HOH HOH . 
X 5 HOH E 8 208 103 HOH HOH . 
Y 5 HOH F 1 701 53 HOH HOH . 
Y 5 HOH F 2 702 9 HOH HOH . 
Y 5 HOH F 3 703 29 HOH HOH . 
Y 5 HOH F 4 704 14 HOH HOH . 
Y 5 HOH F 5 705 43 HOH HOH . 
Y 5 HOH F 6 706 61 HOH HOH . 
Y 5 HOH F 7 707 62 HOH HOH . 
Y 5 HOH F 8 708 18 HOH HOH . 
Y 5 HOH F 9 709 48 HOH HOH . 
Y 5 HOH F 10 710 19 HOH HOH . 
Y 5 HOH F 11 711 20 HOH HOH . 
Y 5 HOH F 12 712 4 HOH HOH . 
Y 5 HOH F 13 713 42 HOH HOH . 
Y 5 HOH F 14 714 11 HOH HOH . 
Y 5 HOH F 15 715 27 HOH HOH . 
Y 5 HOH F 16 716 108 HOH HOH . 
Y 5 HOH F 17 717 21 HOH HOH . 
Y 5 HOH F 18 718 8 HOH HOH . 
Y 5 HOH F 19 719 22 HOH HOH . 
Y 5 HOH F 20 720 41 HOH HOH . 
Y 5 HOH F 21 721 59 HOH HOH . 
Y 5 HOH F 22 722 7 HOH HOH . 
Y 5 HOH F 23 723 55 HOH HOH . 
Y 5 HOH F 24 724 17 HOH HOH . 
Y 5 HOH F 25 725 35 HOH HOH . 
Y 5 HOH F 26 726 16 HOH HOH . 
Y 5 HOH F 27 727 23 HOH HOH . 
Y 5 HOH F 28 728 6 HOH HOH . 
Y 5 HOH F 29 729 56 HOH HOH . 
Y 5 HOH F 30 730 13 HOH HOH . 
Y 5 HOH F 31 731 54 HOH HOH . 
Z 5 HOH I 1 701 63 HOH HOH . 
Z 5 HOH I 2 702 73 HOH HOH . 
Z 5 HOH I 3 703 72 HOH HOH . 
Z 5 HOH I 4 704 33 HOH HOH . 
Z 5 HOH I 5 705 39 HOH HOH . 
Z 5 HOH I 6 706 38 HOH HOH . 
Z 5 HOH I 7 707 74 HOH HOH . 
Z 5 HOH I 8 708 25 HOH HOH . 
Z 5 HOH I 9 709 76 HOH HOH . 
Z 5 HOH I 10 710 32 HOH HOH . 
Z 5 HOH I 11 711 58 HOH HOH . 
Z 5 HOH I 12 712 60 HOH HOH . 
Z 5 HOH I 13 713 34 HOH HOH . 
Z 5 HOH I 14 714 64 HOH HOH . 
Z 5 HOH I 15 715 86 HOH HOH . 
Z 5 HOH I 16 716 31 HOH HOH . 
Z 5 HOH I 17 717 96 HOH HOH . 
AA 5 HOH K 1 201 111 HOH HOH . 
AA 5 HOH K 2 202 112 HOH HOH . 
AA 5 HOH K 3 203 113 HOH HOH . 
AA 5 HOH K 4 204 114 HOH HOH . 
BA 5 HOH L 1 701 47 HOH HOH . 
BA 5 HOH L 2 702 93 HOH HOH . 
BA 5 HOH L 3 703 10 HOH HOH . 
BA 5 HOH L 4 704 24 HOH HOH . 
BA 5 HOH L 5 705 92 HOH HOH . 
BA 5 HOH L 6 706 49 HOH HOH . 
BA 5 HOH L 7 707 50 HOH HOH . 
BA 5 HOH L 8 708 107 HOH HOH . 
BA 5 HOH L 9 709 5 HOH HOH . 
BA 5 HOH L 10 710 78 HOH HOH . 
BA 5 HOH L 11 711 51 HOH HOH . 
BA 5 HOH L 12 712 40 HOH HOH . 
BA 5 HOH L 13 713 46 HOH HOH . 
BA 5 HOH L 14 714 15 HOH HOH . 
BA 5 HOH L 15 715 1 HOH HOH . 
BA 5 HOH L 16 716 36 HOH HOH . 
BA 5 HOH L 17 717 12 HOH HOH . 
BA 5 HOH L 18 718 26 HOH HOH . 
BA 5 HOH L 19 719 52 HOH HOH . 
BA 5 HOH L 20 720 79 HOH HOH . 
BA 5 HOH L 21 721 30 HOH HOH . 
BA 5 HOH L 22 722 2 HOH HOH . 
BA 5 HOH L 23 723 3 HOH HOH . 
BA 5 HOH L 24 724 94 HOH HOH . 
BA 5 HOH L 25 725 37 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           NI 
_atom_site.label_atom_id         NI 
_atom_site.label_comp_id         NI 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         R 
_atom_site.label_entity_id       4 
_atom_site.Cartn_x               -20.257 
_atom_site.Cartn_y               -42.014 
_atom_site.Cartn_z               68.46 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        40.93 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          NI 
_atom_site.auth_comp_id          NI 
_atom_site.auth_seq_id           602 
_atom_site.auth_asym_id          I 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              63 
_model_server_stats.parse_time_ms           29 
_model_server_stats.create_model_time_ms    57 
_model_server_stats.query_time_ms           299 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           1 
#