data_4Z46
#
_model_server_result.job_id            DIIyQLynAvItq83ajuJOiA 
_model_server_result.datetime_utc      '2025-09-12 05:51:08' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4z46 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":203}' 
#
_entry.id    4Z46 
#
_exptl.entry_id    4Z46 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.005 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NITRATE ION' 
_entity.pdbx_number_of_molecules    9 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4Z46 
_cell.length_a            77.318 
_cell.length_b            77.318 
_cell.length_c            37.325 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4Z46 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        96 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 43 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 E N N 
? 3 F N N 
? 3 G N N 
? 3 H N N 
? 3 I N N 
? 3 J N N 
? 3 K N N 
? 3 L N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 6 A CYS 6 1_555 A SG CYS 127 A CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.982 ? 
disulf ? disulf2 A SG CYS 30 A CYS 30 1_555 A SG CYS 115 A CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2 ? 
disulf ? disulf3 A SG CYS 64 A CYS 64 1_555 A SG CYS 80 A CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? 
disulf ? disulf4 A SG CYS 76 A CYS 76 1_555 A SG CYS 94 A CYS 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
metalc ? metalc1 A ND1 HIS 15 A HIS 15 1_555 P PT1 CPT . A CPT 215 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.368 ? 
metalc ? metalc2 A OH TYR 23 A TYR 23 1_555 N NA NA . A NA 213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.996 ? 
metalc ? metalc3 A OE1 GLU 35 A GLU 35 1_555 M NA NA . A NA 212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.677 ? 
metalc ? metalc4 A OD2 ASP 119 A ASP 119 1_555 O PT 1PT . A 1PT 214 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.335 ? 
metalc ? metalc5 H O3 NO3 . A NO3 207 1_555 N NA NA . A NA 213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? 
metalc ? metalc6 K O1 NO3 . A NO3 210 1_555 M NA NA . A NA 212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.72 ? 
metalc ? metalc7 K O3 NO3 . A NO3 210 1_555 M NA NA . A NA 212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.67 ? 
metalc ? metalc8 M NA NA . A NA 212 1_555 Q O HOH . A HOH 336 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.586 ? 
metalc ? metalc9 M NA NA . A NA 212 1_555 Q O HOH . A HOH 359 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.377 ? 
metalc ? metalc10 M NA NA . A NA 212 1_555 Q O HOH . A HOH 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.341 ? 
metalc ? metalc11 N NA NA . A NA 213 1_555 Q O HOH . A HOH 395 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.592 ? 
metalc ? metalc12 O PT 1PT . A 1PT 214 1_555 Q O HOH . A HOH 332 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? 
#
_chem_comp.formula           'N O3 -1' 
_chem_comp.formula_weight    62.005 
_chem_comp.id                NO3 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NITRATE ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N O1 NO3 doub 280 n n 
N O2 NO3 sing 281 n n 
N O3 NO3 sing 282 n n 
#
_atom_sites.entry_id                     4Z46 
_atom_sites.fract_transf_matrix[1][1]    0.012934 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012934 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.026792 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 EDO A 1 201 201 EDO EDO . 
C 2 EDO A 1 202 202 EDO EDO . 
D 3 NO3 A 1 203 401 NO3 NO3 . 
E 3 NO3 A 1 204 403 NO3 NO3 . 
F 3 NO3 A 1 205 405 NO3 NO3 . 
G 3 NO3 A 1 206 406 NO3 NO3 . 
H 3 NO3 A 1 207 407 NO3 NO3 . 
I 3 NO3 A 1 208 408 NO3 NO3 . 
J 3 NO3 A 1 209 409 NO3 NO3 . 
K 3 NO3 A 1 210 410 NO3 NO3 . 
L 3 NO3 A 1 211 411 NO3 NO3 . 
M 4 NA A 1 212 435 NA NA . 
N 4 NA A 1 213 436 NA NA . 
O 5 1PT A 1 214 210 1PT 1PT . 
P 6 CPT A 1 215 1 CPT CPT . 
Q 7 HOH A 1 301 187 HOH HOH . 
Q 7 HOH A 2 302 113 HOH HOH . 
Q 7 HOH A 3 303 115 HOH HOH . 
Q 7 HOH A 4 304 236 HOH HOH . 
Q 7 HOH A 5 305 22 HOH HOH . 
Q 7 HOH A 6 306 127 HOH HOH . 
Q 7 HOH A 7 307 260 HOH HOH . 
Q 7 HOH A 8 308 72 HOH HOH . 
Q 7 HOH A 9 309 129 HOH HOH . 
Q 7 HOH A 10 310 193 HOH HOH . 
Q 7 HOH A 11 311 23 HOH HOH . 
Q 7 HOH A 12 312 49 HOH HOH . 
Q 7 HOH A 13 313 235 HOH HOH . 
Q 7 HOH A 14 314 73 HOH HOH . 
Q 7 HOH A 15 315 201 HOH HOH . 
Q 7 HOH A 16 316 10 HOH HOH . 
Q 7 HOH A 17 317 16 HOH HOH . 
Q 7 HOH A 18 318 168 HOH HOH . 
Q 7 HOH A 19 319 15 HOH HOH . 
Q 7 HOH A 20 320 158 HOH HOH . 
Q 7 HOH A 21 321 192 HOH HOH . 
Q 7 HOH A 22 322 4 HOH HOH . 
Q 7 HOH A 23 323 62 HOH HOH . 
Q 7 HOH A 24 324 208 HOH HOH . 
Q 7 HOH A 25 325 33 HOH HOH . 
Q 7 HOH A 26 326 13 HOH HOH . 
Q 7 HOH A 27 327 214 HOH HOH . 
Q 7 HOH A 28 328 21 HOH HOH . 
Q 7 HOH A 29 329 205 HOH HOH . 
Q 7 HOH A 30 330 59 HOH HOH . 
Q 7 HOH A 31 331 155 HOH HOH . 
Q 7 HOH A 32 332 301 HOH HOH . 
Q 7 HOH A 33 333 14 HOH HOH . 
Q 7 HOH A 34 334 225 HOH HOH . 
Q 7 HOH A 35 335 51 HOH HOH . 
Q 7 HOH A 36 336 27 HOH HOH . 
Q 7 HOH A 37 337 190 HOH HOH . 
Q 7 HOH A 38 338 43 HOH HOH . 
Q 7 HOH A 39 339 40 HOH HOH . 
Q 7 HOH A 40 340 202 HOH HOH . 
Q 7 HOH A 41 341 241 HOH HOH . 
Q 7 HOH A 42 342 289 HOH HOH . 
Q 7 HOH A 43 343 194 HOH HOH . 
Q 7 HOH A 44 344 42 HOH HOH . 
Q 7 HOH A 45 345 212 HOH HOH . 
Q 7 HOH A 46 346 9 HOH HOH . 
Q 7 HOH A 47 347 171 HOH HOH . 
Q 7 HOH A 48 348 167 HOH HOH . 
Q 7 HOH A 49 349 207 HOH HOH . 
Q 7 HOH A 50 350 76 HOH HOH . 
Q 7 HOH A 51 351 219 HOH HOH . 
Q 7 HOH A 52 352 19 HOH HOH . 
Q 7 HOH A 53 353 162 HOH HOH . 
Q 7 HOH A 54 354 18 HOH HOH . 
Q 7 HOH A 55 355 3 HOH HOH . 
Q 7 HOH A 56 356 294 HOH HOH . 
Q 7 HOH A 57 357 197 HOH HOH . 
Q 7 HOH A 58 358 170 HOH HOH . 
Q 7 HOH A 59 359 161 HOH HOH . 
Q 7 HOH A 60 360 292 HOH HOH . 
Q 7 HOH A 61 361 5 HOH HOH . 
Q 7 HOH A 62 362 163 HOH HOH . 
Q 7 HOH A 63 363 182 HOH HOH . 
Q 7 HOH A 64 364 55 HOH HOH . 
Q 7 HOH A 65 365 26 HOH HOH . 
Q 7 HOH A 66 366 119 HOH HOH . 
Q 7 HOH A 67 367 200 HOH HOH . 
Q 7 HOH A 68 368 1 HOH HOH . 
Q 7 HOH A 69 369 224 HOH HOH . 
Q 7 HOH A 70 370 65 HOH HOH . 
Q 7 HOH A 71 371 164 HOH HOH . 
Q 7 HOH A 72 372 32 HOH HOH . 
Q 7 HOH A 73 373 52 HOH HOH . 
Q 7 HOH A 74 374 221 HOH HOH . 
Q 7 HOH A 75 375 38 HOH HOH . 
Q 7 HOH A 76 376 7 HOH HOH . 
Q 7 HOH A 77 377 24 HOH HOH . 
Q 7 HOH A 78 378 176 HOH HOH . 
Q 7 HOH A 79 379 47 HOH HOH . 
Q 7 HOH A 80 380 98 HOH HOH . 
Q 7 HOH A 81 381 145 HOH HOH . 
Q 7 HOH A 82 382 48 HOH HOH . 
Q 7 HOH A 83 383 125 HOH HOH . 
Q 7 HOH A 84 384 185 HOH HOH . 
Q 7 HOH A 85 385 286 HOH HOH . 
Q 7 HOH A 86 386 77 HOH HOH . 
Q 7 HOH A 87 387 64 HOH HOH . 
Q 7 HOH A 88 388 116 HOH HOH . 
Q 7 HOH A 89 389 6 HOH HOH . 
Q 7 HOH A 90 390 180 HOH HOH . 
Q 7 HOH A 91 391 157 HOH HOH . 
Q 7 HOH A 92 392 159 HOH HOH . 
Q 7 HOH A 93 393 89 HOH HOH . 
Q 7 HOH A 94 394 231 HOH HOH . 
Q 7 HOH A 95 395 130 HOH HOH . 
Q 7 HOH A 96 396 203 HOH HOH . 
Q 7 HOH A 97 397 166 HOH HOH . 
Q 7 HOH A 98 398 179 HOH HOH . 
Q 7 HOH A 99 399 282 HOH HOH . 
Q 7 HOH A 100 400 277 HOH HOH . 
Q 7 HOH A 101 401 188 HOH HOH . 
Q 7 HOH A 102 402 25 HOH HOH . 
Q 7 HOH A 103 403 284 HOH HOH . 
Q 7 HOH A 104 404 283 HOH HOH . 
Q 7 HOH A 105 405 186 HOH HOH . 
Q 7 HOH A 106 406 285 HOH HOH . 
Q 7 HOH A 107 407 293 HOH HOH . 
Q 7 HOH A 108 408 178 HOH HOH . 
Q 7 HOH A 109 409 199 HOH HOH . 
Q 7 HOH A 110 410 295 HOH HOH . 
Q 7 HOH A 111 411 173 HOH HOH . 
Q 7 HOH A 112 412 287 HOH HOH . 
Q 7 HOH A 113 413 153 HOH HOH . 
Q 7 HOH A 114 414 198 HOH HOH . 
Q 7 HOH A 115 415 121 HOH HOH . 
Q 7 HOH A 116 416 275 HOH HOH . 
Q 7 HOH A 117 417 290 HOH HOH . 
Q 7 HOH A 118 418 17 HOH HOH . 
Q 7 HOH A 119 419 183 HOH HOH . 
Q 7 HOH A 120 420 280 HOH HOH . 
Q 7 HOH A 121 421 204 HOH HOH . 
Q 7 HOH A 122 422 184 HOH HOH . 
Q 7 HOH A 123 423 191 HOH HOH . 
Q 7 HOH A 124 424 272 HOH HOH . 
Q 7 HOH A 125 425 206 HOH HOH . 
Q 7 HOH A 126 426 209 HOH HOH . 
Q 7 HOH A 127 427 136 HOH HOH . 
Q 7 HOH A 128 428 156 HOH HOH . 
Q 7 HOH A 129 429 297 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N NO3 . . . D 3 -28.529 -11.959 -16.399 0.75 29.79 ? N NO3 203 A 1 
HETATM 2 O O1 NO3 . . . D 3 -28.986 -10.888 -16.267 0.75 28.16 ? O1 NO3 203 A 1 
HETATM 3 O O2 NO3 . . . D 3 -27.265 -12.17 -15.916 0.75 32.2 ? O2 NO3 203 A 1 
HETATM 4 O O3 NO3 . . . D 3 -29.241 -13.008 -17.009 0.75 36.38 ? O3 NO3 203 A 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           331 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           4 
#