data_4Z4F # _model_server_result.job_id C81HDo6WGZplvLG-HS9k0Q _model_server_result.datetime_utc '2024-11-12 20:50:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4z4f # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":904}' # _entry.id 4Z4F # _exptl.entry_id 4Z4F _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 94.111 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description PHENOL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 92.52 _cell.angle_gamma 90 _cell.entry_id 4Z4F _cell.length_a 55.859 _cell.length_b 116.591 _cell.length_c 70.375 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4Z4F _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 E N N ? 5 F N N ? 5 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 C O3' A 8 D A 8 1_555 C P N6G 9 D N6G 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.607 ? covale ? covale2 C O3' N6G 9 D N6G 9 1_555 C P A 10 D A 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.607 ? metalc ? metalc1 A OD1 ASP 597 A ASP 597 1_555 D MG MG . A MG 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.43 ? metalc ? metalc2 A O VAL 598 A VAL 598 1_555 D MG MG . A MG 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.079 ? metalc ? metalc3 D MG MG . A MG 901 1_555 J O HOH . A HOH 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.285 ? metalc ? metalc4 D MG MG . A MG 901 1_555 J O HOH . A HOH 1006 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.15 ? metalc ? metalc5 D MG MG . A MG 901 1_555 J O HOH . A HOH 1007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.137 ? metalc ? metalc6 D MG MG . A MG 901 1_555 K O HOH . B HOH 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.161 ? metalc ? metalc7 B OP2 A 13 B A 13 1_555 H MG MG . B MG 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.772 ? metalc ? metalc8 H MG MG . B MG 101 1_555 K O HOH . B HOH 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.114 ? metalc ? metalc9 H MG MG . B MG 101 1_555 K O HOH . B HOH 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.263 ? metalc ? metalc10 C O4 U 4 D U 4 1_555 I MG MG . D MG 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.137 ? metalc ? metalc11 I MG MG . D MG 101 1_555 L O HOH . D HOH 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.405 ? metalc ? metalc12 I MG MG . D MG 101 1_555 L O HOH . D HOH 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.985 ? metalc ? metalc13 I MG MG . D MG 101 1_555 L O HOH . D HOH 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.388 ? metalc ? metalc14 I MG MG . D MG 101 1_555 L O HOH . D HOH 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.984 ? metalc ? metalc15 I MG MG . D MG 101 1_555 L O HOH . D HOH 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.685 ? hydrog WATSON-CRICK hydrog1 B N3 U 2 B U 2 1_555 C N1 A 8 D A 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 B O4 U 2 B U 2 1_555 C N6 A 8 D A 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 B N3 C 3 B C 3 1_555 C N1 G 7 D G 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 B N4 C 3 B C 3 1_555 C O6 G 7 D G 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 B O2 C 3 B C 3 1_555 C N2 G 7 D G 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 B N1 A 4 B A 4 1_555 C N3 U 6 D U 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 B N6 A 4 B A 4 1_555 C O4 U 6 D U 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 B N3 C 5 B C 5 1_555 C N1 G 5 D G 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 B N4 C 5 B C 5 1_555 C O6 G 5 D G 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 B O2 C 5 B C 5 1_555 C N2 G 5 D G 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'A-U PAIR' hydrog11 B N1 A 6 B A 6 1_555 C N3 U 4 D U 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 B N3 U 7 B U 7 1_555 C N1 A 3 D A 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 B O4 U 7 B U 7 1_555 C N6 A 3 D A 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 B N3 U 8 B U 8 1_555 C N1 A 2 D A 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 B O4 U 8 B U 8 1_555 C N6 A 2 D A 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 B N1 G 9 B G 9 1_555 C N3 C 1 D C 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 B N2 G 9 B G 9 1_555 C O2 C 1 D C 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 B O6 G 9 B G 9 1_555 C N4 C 1 D C 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'C6 H6 O' _chem_comp.formula_weight 94.111 _chem_comp.id IPH _chem_comp.mon_nstd_flag . _chem_comp.name PHENOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 IPH doub 288 n y C1 C6 IPH sing 289 n y C1 O1 IPH sing 290 n n C2 C3 IPH sing 291 n y C2 H2 IPH sing 292 n n C3 C4 IPH doub 293 n y C3 H3 IPH sing 294 n n C4 C5 IPH sing 295 n y C4 H4 IPH sing 296 n n C5 C6 IPH doub 297 n y C5 H5 IPH sing 298 n n C6 H6 IPH sing 299 n n O1 HO1 IPH sing 300 n n # _atom_sites.entry_id 4Z4F _atom_sites.fract_transf_matrix[1][1] 0.017902 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000787 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008577 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014223 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 MG A 1 901 1 MG MG . E 5 IPH A 1 902 1 IPH IPH . F 5 IPH A 1 903 2 IPH IPH . G 5 IPH A 1 904 3 IPH IPH . H 4 MG B 1 101 3 MG MG . I 4 MG D 1 101 2 MG MG . J 6 HOH A 1 1001 16 HOH HOH . J 6 HOH A 2 1002 2 HOH HOH . J 6 HOH A 3 1003 5 HOH HOH . J 6 HOH A 4 1004 17 HOH HOH . J 6 HOH A 5 1005 3 HOH HOH . J 6 HOH A 6 1006 4 HOH HOH . J 6 HOH A 7 1007 7 HOH HOH . K 6 HOH B 1 201 14 HOH HOH . K 6 HOH B 2 202 13 HOH HOH . K 6 HOH B 3 203 15 HOH HOH . K 6 HOH B 4 204 6 HOH HOH . L 6 HOH D 1 201 9 HOH HOH . L 6 HOH D 2 202 8 HOH HOH . L 6 HOH D 3 203 10 HOH HOH . L 6 HOH D 4 204 11 HOH HOH . L 6 HOH D 5 205 12 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 IPH . . . G 5 50.693 -25.066 38.074 1 48.27 ? C1 IPH 904 A 1 HETATM 2 C C2 IPH . . . G 5 51.389 -25.485 39.208 1 38.7 ? C2 IPH 904 A 1 HETATM 3 C C3 IPH . . . G 5 50.947 -25.121 40.476 1 27.27 ? C3 IPH 904 A 1 HETATM 4 C C4 IPH . . . G 5 49.806 -24.34 40.616 1 33.31 ? C4 IPH 904 A 1 HETATM 5 C C5 IPH . . . G 5 49.109 -23.926 39.484 1 43.18 ? C5 IPH 904 A 1 HETATM 6 C C6 IPH . . . G 5 49.545 -24.29 38.213 1 48.48 ? C6 IPH 904 A 1 HETATM 7 O O1 IPH . . . G 5 51.124 -25.434 36.822 1 51.65 ? O1 IPH 904 A 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 291 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 7 #