data_4Z51
#
_model_server_result.job_id            dYditlYAOYr2UL5eV_DT_A 
_model_server_result.datetime_utc      '2025-02-05 14:49:38' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4z51 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":401}' 
#
_entry.id    4Z51 
#
_exptl.entry_id    4Z51 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              522.196 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          108.5 
_cell.angle_gamma         90 
_cell.entry_id            4Z51 
_cell.length_a            51.28 
_cell.length_b            74.27 
_cell.length_c            79.21 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4Z51 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OG SER 16 A SER 75 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.153 ? 
metalc ? metalc2 A OG1 THR 43 A THR 102 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.123 ? 
metalc ? metalc3 B O2G GNP . A GNP 401 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
metalc ? metalc4 B O1B GNP . A GNP 401 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
metalc ? metalc5 C MG MG . A MG 402 1_555 D O HOH . A HOH 547 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.176 ? 
metalc ? metalc6 C MG MG . A MG 402 1_555 D O HOH . A HOH 562 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.106 ? 
#
_chem_comp.formula           'C10 H17 N6 O13 P3' 
_chem_comp.formula_weight    522.196 
_chem_comp.id                GNP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G GNP doub 129 n n 
PG O2G GNP sing 130 n n 
PG O3G GNP sing 131 n n 
PG N3B GNP sing 132 n n 
O2G HOG2 GNP sing 133 n n 
O3G HOG3 GNP sing 134 n n 
N3B PB GNP sing 135 n n 
N3B HNB3 GNP sing 136 n n 
PB O1B GNP doub 137 n n 
PB O2B GNP sing 138 n n 
PB O3A GNP sing 139 n n 
O2B HOB2 GNP sing 140 n n 
O3A PA GNP sing 141 n n 
PA O1A GNP doub 142 n n 
PA O2A GNP sing 143 n n 
PA O5' GNP sing 144 n n 
O2A HOA2 GNP sing 145 n n 
O5' C5' GNP sing 146 n n 
C5' C4' GNP sing 147 n n 
C5' "H5'2" GNP sing 148 n n 
C5' "H5'1" GNP sing 149 n n 
C4' O4' GNP sing 150 n n 
C4' C3' GNP sing 151 n n 
C4' H4' GNP sing 152 n n 
O4' C1' GNP sing 153 n n 
C3' O3' GNP sing 154 n n 
C3' C2' GNP sing 155 n n 
C3' H3' GNP sing 156 n n 
O3' HO3' GNP sing 157 n n 
C2' O2' GNP sing 158 n n 
C2' C1' GNP sing 159 n n 
C2' H2' GNP sing 160 n n 
O2' HO2' GNP sing 161 n n 
C1' N9 GNP sing 162 n n 
C1' H1' GNP sing 163 n n 
N9 C8 GNP sing 164 n y 
N9 C4 GNP sing 165 n y 
C8 N7 GNP doub 166 n y 
C8 H8 GNP sing 167 n n 
N7 C5 GNP sing 168 n y 
C5 C6 GNP sing 169 n y 
C5 C4 GNP doub 170 n y 
C6 O6 GNP doub 171 n n 
C6 N1 GNP sing 172 n y 
N1 C2 GNP sing 173 n y 
N1 HN1 GNP sing 174 n n 
C2 N2 GNP sing 175 n n 
C2 N3 GNP doub 176 n y 
N2 HN21 GNP sing 177 n n 
N2 HN22 GNP sing 178 n n 
N3 C4 GNP sing 179 n y 
#
_atom_sites.entry_id                     4Z51 
_atom_sites.fract_transf_matrix[1][1]    0.019501 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.006525 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013464 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.013313 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 GNP A 1 401 372 GNP GNP . 
C 3 MG A 1 402 1 MG MG . 
D 4 HOH A 1 501 144 HOH HOH . 
D 4 HOH A 2 502 145 HOH HOH . 
D 4 HOH A 3 503 26 HOH HOH . 
D 4 HOH A 4 504 125 HOH HOH . 
D 4 HOH A 5 505 119 HOH HOH . 
D 4 HOH A 6 506 41 HOH HOH . 
D 4 HOH A 7 507 151 HOH HOH . 
D 4 HOH A 8 508 101 HOH HOH . 
D 4 HOH A 9 509 126 HOH HOH . 
D 4 HOH A 10 510 72 HOH HOH . 
D 4 HOH A 11 511 118 HOH HOH . 
D 4 HOH A 12 512 95 HOH HOH . 
D 4 HOH A 13 513 27 HOH HOH . 
D 4 HOH A 14 514 102 HOH HOH . 
D 4 HOH A 15 515 43 HOH HOH . 
D 4 HOH A 16 516 6 HOH HOH . 
D 4 HOH A 17 517 30 HOH HOH . 
D 4 HOH A 18 518 16 HOH HOH . 
D 4 HOH A 19 519 20 HOH HOH . 
D 4 HOH A 20 520 74 HOH HOH . 
D 4 HOH A 21 521 12 HOH HOH . 
D 4 HOH A 22 522 39 HOH HOH . 
D 4 HOH A 23 523 25 HOH HOH . 
D 4 HOH A 24 524 69 HOH HOH . 
D 4 HOH A 25 525 50 HOH HOH . 
D 4 HOH A 26 526 58 HOH HOH . 
D 4 HOH A 27 527 87 HOH HOH . 
D 4 HOH A 28 528 96 HOH HOH . 
D 4 HOH A 29 529 13 HOH HOH . 
D 4 HOH A 30 530 53 HOH HOH . 
D 4 HOH A 31 531 67 HOH HOH . 
D 4 HOH A 32 532 40 HOH HOH . 
D 4 HOH A 33 533 29 HOH HOH . 
D 4 HOH A 34 534 24 HOH HOH . 
D 4 HOH A 35 535 11 HOH HOH . 
D 4 HOH A 36 536 103 HOH HOH . 
D 4 HOH A 37 537 18 HOH HOH . 
D 4 HOH A 38 538 112 HOH HOH . 
D 4 HOH A 39 539 71 HOH HOH . 
D 4 HOH A 40 540 86 HOH HOH . 
D 4 HOH A 41 541 44 HOH HOH . 
D 4 HOH A 42 542 94 HOH HOH . 
D 4 HOH A 43 543 104 HOH HOH . 
D 4 HOH A 44 544 54 HOH HOH . 
D 4 HOH A 45 545 10 HOH HOH . 
D 4 HOH A 46 546 89 HOH HOH . 
D 4 HOH A 47 547 99 HOH HOH . 
D 4 HOH A 48 548 73 HOH HOH . 
D 4 HOH A 49 549 14 HOH HOH . 
D 4 HOH A 50 550 32 HOH HOH . 
D 4 HOH A 51 551 142 HOH HOH . 
D 4 HOH A 52 552 57 HOH HOH . 
D 4 HOH A 53 553 33 HOH HOH . 
D 4 HOH A 54 554 79 HOH HOH . 
D 4 HOH A 55 555 47 HOH HOH . 
D 4 HOH A 56 556 19 HOH HOH . 
D 4 HOH A 57 557 2 HOH HOH . 
D 4 HOH A 58 558 52 HOH HOH . 
D 4 HOH A 59 559 21 HOH HOH . 
D 4 HOH A 60 560 36 HOH HOH . 
D 4 HOH A 61 561 134 HOH HOH . 
D 4 HOH A 62 562 100 HOH HOH . 
D 4 HOH A 63 563 77 HOH HOH . 
D 4 HOH A 64 564 60 HOH HOH . 
D 4 HOH A 65 565 146 HOH HOH . 
D 4 HOH A 66 566 1 HOH HOH . 
D 4 HOH A 67 567 34 HOH HOH . 
D 4 HOH A 68 568 5 HOH HOH . 
D 4 HOH A 69 569 9 HOH HOH . 
D 4 HOH A 70 570 59 HOH HOH . 
D 4 HOH A 71 571 117 HOH HOH . 
D 4 HOH A 72 572 48 HOH HOH . 
D 4 HOH A 73 573 85 HOH HOH . 
D 4 HOH A 74 574 127 HOH HOH . 
D 4 HOH A 75 575 31 HOH HOH . 
D 4 HOH A 76 576 38 HOH HOH . 
D 4 HOH A 77 577 123 HOH HOH . 
D 4 HOH A 78 578 3 HOH HOH . 
D 4 HOH A 79 579 130 HOH HOH . 
D 4 HOH A 80 580 55 HOH HOH . 
D 4 HOH A 81 581 66 HOH HOH . 
D 4 HOH A 82 582 137 HOH HOH . 
D 4 HOH A 83 583 46 HOH HOH . 
D 4 HOH A 84 584 139 HOH HOH . 
D 4 HOH A 85 585 62 HOH HOH . 
D 4 HOH A 86 586 22 HOH HOH . 
D 4 HOH A 87 587 4 HOH HOH . 
D 4 HOH A 88 588 81 HOH HOH . 
D 4 HOH A 89 589 17 HOH HOH . 
D 4 HOH A 90 590 106 HOH HOH . 
D 4 HOH A 91 591 35 HOH HOH . 
D 4 HOH A 92 592 61 HOH HOH . 
D 4 HOH A 93 593 78 HOH HOH . 
D 4 HOH A 94 594 114 HOH HOH . 
D 4 HOH A 95 595 28 HOH HOH . 
D 4 HOH A 96 596 42 HOH HOH . 
D 4 HOH A 97 597 98 HOH HOH . 
D 4 HOH A 98 598 8 HOH HOH . 
D 4 HOH A 99 599 7 HOH HOH . 
D 4 HOH A 100 600 131 HOH HOH . 
D 4 HOH A 101 601 49 HOH HOH . 
D 4 HOH A 102 602 105 HOH HOH . 
D 4 HOH A 103 603 120 HOH HOH . 
D 4 HOH A 104 604 91 HOH HOH . 
D 4 HOH A 105 605 63 HOH HOH . 
D 4 HOH A 106 606 141 HOH HOH . 
D 4 HOH A 107 607 107 HOH HOH . 
D 4 HOH A 108 608 76 HOH HOH . 
D 4 HOH A 109 609 128 HOH HOH . 
D 4 HOH A 110 610 109 HOH HOH . 
D 4 HOH A 111 611 147 HOH HOH . 
D 4 HOH A 112 612 75 HOH HOH . 
D 4 HOH A 113 613 135 HOH HOH . 
D 4 HOH A 114 614 15 HOH HOH . 
D 4 HOH A 115 615 88 HOH HOH . 
D 4 HOH A 116 616 143 HOH HOH . 
D 4 HOH A 117 617 23 HOH HOH . 
D 4 HOH A 118 618 64 HOH HOH . 
D 4 HOH A 119 619 90 HOH HOH . 
D 4 HOH A 120 620 129 HOH HOH . 
D 4 HOH A 121 621 37 HOH HOH . 
D 4 HOH A 122 622 133 HOH HOH . 
D 4 HOH A 123 623 80 HOH HOH . 
D 4 HOH A 124 624 45 HOH HOH . 
D 4 HOH A 125 625 110 HOH HOH . 
D 4 HOH A 126 626 111 HOH HOH . 
D 4 HOH A 127 627 115 HOH HOH . 
D 4 HOH A 128 628 97 HOH HOH . 
D 4 HOH A 129 629 148 HOH HOH . 
D 4 HOH A 130 630 51 HOH HOH . 
D 4 HOH A 131 631 138 HOH HOH . 
D 4 HOH A 132 632 68 HOH HOH . 
D 4 HOH A 133 633 84 HOH HOH . 
D 4 HOH A 134 634 92 HOH HOH . 
D 4 HOH A 135 635 82 HOH HOH . 
D 4 HOH A 136 636 70 HOH HOH . 
D 4 HOH A 137 637 121 HOH HOH . 
D 4 HOH A 138 638 108 HOH HOH . 
D 4 HOH A 139 639 122 HOH HOH . 
D 4 HOH A 140 640 83 HOH HOH . 
D 4 HOH A 141 641 149 HOH HOH . 
D 4 HOH A 142 642 65 HOH HOH . 
D 4 HOH A 143 643 113 HOH HOH . 
D 4 HOH A 144 644 56 HOH HOH . 
D 4 HOH A 145 645 116 HOH HOH . 
D 4 HOH A 146 646 93 HOH HOH . 
D 4 HOH A 147 647 140 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG GNP . . . B 2 27.798 31.956 33.536 1 24.91 ? PG GNP 401 A 1 
HETATM 2 O O1G GNP . . . B 2 28.659 31.266 32.508 1 27.36 ? O1G GNP 401 A 1 
HETATM 3 O O2G GNP . . . B 2 26.373 32.162 33.118 1 22.8 ? O2G GNP 401 A 1 
HETATM 4 O O3G GNP . . . B 2 27.733 31.282 34.88 1 26.42 ? O3G GNP 401 A 1 
HETATM 5 N N3B GNP . . . B 2 28.432 33.417 33.799 1 20.28 ? N3B GNP 401 A 1 
HETATM 6 P PB GNP . . . B 2 28.697 34.557 32.691 1 21.32 ? PB GNP 401 A 1 
HETATM 7 O O1B GNP . . . B 2 27.513 34.678 31.825 1 19.77 ? O1B GNP 401 A 1 
HETATM 8 O O2B GNP . . . B 2 29.97 34.307 31.994 1 21.02 ? O2B GNP 401 A 1 
HETATM 9 O O3A GNP . . . B 2 28.899 35.904 33.444 1 24.01 ? O3A GNP 401 A 1 
HETATM 10 P PA GNP . . . B 2 27.889 37.068 33.637 1 24.36 ? PA GNP 401 A 1 
HETATM 11 O O1A GNP . . . B 2 27.655 37.808 32.376 1 21.67 1 O1A GNP 401 A 1 
HETATM 12 O O2A GNP . . . B 2 26.709 36.598 34.389 1 24.7 ? O2A GNP 401 A 1 
HETATM 13 O O5' GNP . . . B 2 28.627 38.107 34.562 1 21.29 ? O5' GNP 401 A 1 
HETATM 14 C C5' GNP . . . B 2 29.161 37.72 35.836 1 22.83 ? C5' GNP 401 A 1 
HETATM 15 C C4' GNP . . . B 2 29.495 38.946 36.678 1 25.56 ? C4' GNP 401 A 1 
HETATM 16 O O4' GNP . . . B 2 30.585 39.694 36.067 1 22.66 ? O4' GNP 401 A 1 
HETATM 17 C C3' GNP . . . B 2 28.363 39.953 36.862 1 24.91 ? C3' GNP 401 A 1 
HETATM 18 O O3' GNP . . . B 2 28.454 40.511 38.161 1 27 ? O3' GNP 401 A 1 
HETATM 19 C C2' GNP . . . B 2 28.674 40.991 35.784 1 25.54 ? C2' GNP 401 A 1 
HETATM 20 O O2' GNP . . . B 2 28.119 42.263 36.029 1 25.97 ? O2' GNP 401 A 1 
HETATM 21 C C1' GNP . . . B 2 30.19 41.038 35.875 1 20.38 ? C1' GNP 401 A 1 
HETATM 22 N N9 GNP . . . B 2 30.818 41.488 34.643 1 23.65 ? N9 GNP 401 A 1 
HETATM 23 C C8 GNP . . . B 2 30.353 41.273 33.366 1 27.05 ? C8 GNP 401 A 1 
HETATM 24 N N7 GNP . . . B 2 31.127 41.776 32.445 1 23.32 ? N7 GNP 401 A 1 
HETATM 25 C C5 GNP . . . B 2 32.174 42.349 33.152 1 21.45 ? C5 GNP 401 A 1 
HETATM 26 C C6 GNP . . . B 2 33.32 43.031 32.689 1 22.33 ? C6 GNP 401 A 1 
HETATM 27 O O6 GNP . . . B 2 33.642 43.273 31.522 1 22.35 ? O6 GNP 401 A 1 
HETATM 28 N N1 GNP . . . B 2 34.136 43.443 33.739 1 19.45 ? N1 GNP 401 A 1 
HETATM 29 C C2 GNP . . . B 2 33.886 43.225 35.072 1 20.73 ? C2 GNP 401 A 1 
HETATM 30 N N2 GNP . . . B 2 34.798 43.709 35.941 1 19.64 ? N2 GNP 401 A 1 
HETATM 31 N N3 GNP . . . B 2 32.817 42.582 35.519 1 18.48 ? N3 GNP 401 A 1 
HETATM 32 C C4 GNP . . . B 2 32.005 42.18 34.511 1 19.09 ? C4 GNP 401 A 1 
#
_model_server_stats.io_time_ms              32 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           383 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           32 
#