data_4Z5Q # _model_server_result.job_id hUBsp-HlN53NyE1vEPQJeg _model_server_result.datetime_utc '2024-11-05 01:00:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4z5q # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":407}' # _entry.id 4Z5Q # _exptl.entry_id 4Z5Q _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 326.383 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3,6,9,12,15,18-HEXAOXAICOSANE-1,20-DIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 97.67 _cell.angle_gamma 90 _cell.entry_id 4Z5Q _cell.length_a 47.307 _cell.length_b 83.434 _cell.length_c 48.192 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4Z5Q _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id H _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 87 A ASP 64 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.196 ? metalc ? metalc2 A OD1 ASP 186 A ASP 163 1_555 C MG MG . A MG 402 1_556 ? ? ? ? ? ? ? ? ? ? ? ? 2.094 ? metalc ? metalc3 A OD1 ASP 221 A ASP 198 1_555 D MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.177 ? metalc ? metalc4 A OE1 GLU 294 A GLU 271 1_555 E MG MG . A MG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.143 ? metalc ? metalc5 A SG CYS 375 A CYS 352 1_555 B FE HEM . A HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.295 ? metalc ? metalc6 B FE HEM . A HEM 401 1_555 J O HOH . A HOH 409 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.175 ? metalc ? metalc7 C MG MG . A MG 402 1_555 J O HOH . A HOH 544 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.165 ? metalc ? metalc8 C MG MG . A MG 402 1_555 J O HOH . A HOH 545 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.171 ? metalc ? metalc9 C MG MG . A MG 402 1_555 J O HOH . A HOH 546 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.163 ? metalc ? metalc10 C MG MG . A MG 402 1_555 J O HOH . A HOH 547 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.136 ? metalc ? metalc11 D MG MG . A MG 403 1_555 J O HOH . A HOH 548 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.168 ? metalc ? metalc12 D MG MG . A MG 403 1_555 J O HOH . A HOH 549 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.165 ? metalc ? metalc13 D MG MG . A MG 403 1_555 J O HOH . A HOH 550 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.182 ? metalc ? metalc14 D MG MG . A MG 403 1_555 J O HOH . A HOH 551 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.164 ? metalc ? metalc15 D MG MG . A MG 403 1_555 J O HOH . A HOH 552 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.171 ? metalc ? metalc16 E MG MG . A MG 404 1_555 J O HOH . A HOH 553 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.183 ? metalc ? metalc17 E MG MG . A MG 404 1_555 J O HOH . A HOH 554 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.17 ? metalc ? metalc18 E MG MG . A MG 404 1_555 J O HOH . A HOH 555 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.176 ? metalc ? metalc19 E MG MG . A MG 404 1_555 J O HOH . A HOH 556 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.169 ? metalc ? metalc20 E MG MG . A MG 404 1_555 J O HOH . A HOH 557 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.168 ? # _chem_comp.formula 'C14 H30 O8' _chem_comp.formula_weight 326.383 _chem_comp.id P33 _chem_comp.mon_nstd_flag . _chem_comp.name 3,6,9,12,15,18-HEXAOXAICOSANE-1,20-DIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'HEPTAETHYLENE GLYCOL;PEG330' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O22 C21 P33 sing 356 n n O22 H22 P33 sing 357 n n C21 C20 P33 sing 358 n n C21 H211 P33 sing 359 n n C21 H212 P33 sing 360 n n C20 O19 P33 sing 361 n n C20 H201 P33 sing 362 n n C20 H202 P33 sing 363 n n O19 C18 P33 sing 364 n n C18 C17 P33 sing 365 n n C18 H181 P33 sing 366 n n C18 H182 P33 sing 367 n n C17 O16 P33 sing 368 n n C17 H171 P33 sing 369 n n C17 H172 P33 sing 370 n n O16 C15 P33 sing 371 n n C15 C14 P33 sing 372 n n C15 H151 P33 sing 373 n n C15 H152 P33 sing 374 n n C14 O13 P33 sing 375 n n C14 H141 P33 sing 376 n n C14 H142 P33 sing 377 n n O13 C12 P33 sing 378 n n C12 C11 P33 sing 379 n n C12 H121 P33 sing 380 n n C12 H122 P33 sing 381 n n C11 O10 P33 sing 382 n n C11 H111 P33 sing 383 n n C11 H112 P33 sing 384 n n O10 C9 P33 sing 385 n n C9 C8 P33 sing 386 n n C9 H91 P33 sing 387 n n C9 H92 P33 sing 388 n n C8 O7 P33 sing 389 n n C8 H81 P33 sing 390 n n C8 H82 P33 sing 391 n n O7 C6 P33 sing 392 n n C6 C5 P33 sing 393 n n C6 H61 P33 sing 394 n n C6 H62 P33 sing 395 n n C5 O4 P33 sing 396 n n C5 H51 P33 sing 397 n n C5 H52 P33 sing 398 n n O4 C3 P33 sing 399 n n C3 C2 P33 sing 400 n n C3 H31 P33 sing 401 n n C3 H32 P33 sing 402 n n C2 O1 P33 sing 403 n n C2 H21 P33 sing 404 n n C2 H22A P33 sing 405 n n O1 HO1 P33 sing 406 n n # _atom_sites.entry_id 4Z5Q _atom_sites.fract_transf_matrix[1][1] 0.021139 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002847 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011986 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.020938 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 401 401 HEM HEM . C 3 MG A 1 402 402 MG MG . D 3 MG A 1 403 403 MG MG . E 3 MG A 1 404 404 MG MG . F 4 CL A 1 405 405 CL CL . G 4 CL A 1 406 406 CL CL . H 5 P33 A 1 407 407 P33 P33 . I 6 1PE A 1 408 408 1PE 1PE . J 7 HOH A 1 409 409 HOH HOH . J 7 HOH A 2 410 410 HOH HOH . J 7 HOH A 3 411 411 HOH HOH . J 7 HOH A 4 412 412 HOH HOH . J 7 HOH A 5 413 413 HOH HOH . J 7 HOH A 6 414 414 HOH HOH . J 7 HOH A 7 415 415 HOH HOH . J 7 HOH A 8 416 416 HOH HOH . J 7 HOH A 9 417 417 HOH HOH . J 7 HOH A 10 418 418 HOH HOH . J 7 HOH A 11 419 419 HOH HOH . J 7 HOH A 12 420 420 HOH HOH . J 7 HOH A 13 421 421 HOH HOH . J 7 HOH A 14 422 422 HOH HOH . J 7 HOH A 15 423 423 HOH HOH . J 7 HOH A 16 424 424 HOH HOH . J 7 HOH A 17 425 425 HOH HOH . J 7 HOH A 18 426 426 HOH HOH . J 7 HOH A 19 427 427 HOH HOH . J 7 HOH A 20 428 428 HOH HOH . J 7 HOH A 21 429 429 HOH HOH . J 7 HOH A 22 430 430 HOH HOH . J 7 HOH A 23 431 431 HOH HOH . J 7 HOH A 24 432 432 HOH HOH . J 7 HOH A 25 433 433 HOH HOH . J 7 HOH A 26 434 434 HOH HOH . J 7 HOH A 27 435 435 HOH HOH . J 7 HOH A 28 436 436 HOH HOH . J 7 HOH A 29 437 437 HOH HOH . J 7 HOH A 30 438 438 HOH HOH . J 7 HOH A 31 439 439 HOH HOH . J 7 HOH A 32 440 440 HOH HOH . J 7 HOH A 33 441 441 HOH HOH . J 7 HOH A 34 442 442 HOH HOH . J 7 HOH A 35 443 443 HOH HOH . J 7 HOH A 36 444 444 HOH HOH . J 7 HOH A 37 445 445 HOH HOH . J 7 HOH A 38 446 446 HOH HOH . J 7 HOH A 39 447 447 HOH HOH . J 7 HOH A 40 448 448 HOH HOH . J 7 HOH A 41 449 449 HOH HOH . J 7 HOH A 42 450 450 HOH HOH . J 7 HOH A 43 451 451 HOH HOH . J 7 HOH A 44 452 452 HOH HOH . J 7 HOH A 45 453 453 HOH HOH . J 7 HOH A 46 454 454 HOH HOH . J 7 HOH A 47 455 455 HOH HOH . J 7 HOH A 48 456 456 HOH HOH . J 7 HOH A 49 457 457 HOH HOH . J 7 HOH A 50 458 458 HOH HOH . J 7 HOH A 51 459 459 HOH HOH . J 7 HOH A 52 460 460 HOH HOH . J 7 HOH A 53 461 461 HOH HOH . J 7 HOH A 54 462 462 HOH HOH . J 7 HOH A 55 463 463 HOH HOH . J 7 HOH A 56 464 464 HOH HOH . J 7 HOH A 57 465 465 HOH HOH . J 7 HOH A 58 466 466 HOH HOH . J 7 HOH A 59 467 467 HOH HOH . J 7 HOH A 60 468 468 HOH HOH . J 7 HOH A 61 469 469 HOH HOH . J 7 HOH A 62 470 470 HOH HOH . J 7 HOH A 63 471 471 HOH HOH . J 7 HOH A 64 472 472 HOH HOH . J 7 HOH A 65 473 473 HOH HOH . J 7 HOH A 66 474 474 HOH HOH . J 7 HOH A 67 475 475 HOH HOH . J 7 HOH A 68 476 476 HOH HOH . J 7 HOH A 69 477 477 HOH HOH . J 7 HOH A 70 478 478 HOH HOH . J 7 HOH A 71 479 479 HOH HOH . J 7 HOH A 72 480 480 HOH HOH . J 7 HOH A 73 481 481 HOH HOH . J 7 HOH A 74 482 482 HOH HOH . J 7 HOH A 75 483 483 HOH HOH . J 7 HOH A 76 484 484 HOH HOH . J 7 HOH A 77 485 485 HOH HOH . J 7 HOH A 78 486 486 HOH HOH . J 7 HOH A 79 487 487 HOH HOH . J 7 HOH A 80 488 488 HOH HOH . J 7 HOH A 81 489 489 HOH HOH . J 7 HOH A 82 490 490 HOH HOH . J 7 HOH A 83 491 491 HOH HOH . J 7 HOH A 84 492 492 HOH HOH . J 7 HOH A 85 493 493 HOH HOH . J 7 HOH A 86 494 494 HOH HOH . J 7 HOH A 87 495 495 HOH HOH . J 7 HOH A 88 496 496 HOH HOH . J 7 HOH A 89 497 497 HOH HOH . J 7 HOH A 90 498 498 HOH HOH . J 7 HOH A 91 499 499 HOH HOH . J 7 HOH A 92 500 500 HOH HOH . J 7 HOH A 93 501 501 HOH HOH . J 7 HOH A 94 502 502 HOH HOH . J 7 HOH A 95 503 503 HOH HOH . J 7 HOH A 96 504 504 HOH HOH . J 7 HOH A 97 505 505 HOH HOH . J 7 HOH A 98 506 506 HOH HOH . J 7 HOH A 99 507 507 HOH HOH . J 7 HOH A 100 508 508 HOH HOH . J 7 HOH A 101 509 509 HOH HOH . J 7 HOH A 102 510 510 HOH HOH . J 7 HOH A 103 511 511 HOH HOH . J 7 HOH A 104 512 512 HOH HOH . J 7 HOH A 105 513 513 HOH HOH . J 7 HOH A 106 514 514 HOH HOH . J 7 HOH A 107 515 515 HOH HOH . J 7 HOH A 108 516 516 HOH HOH . J 7 HOH A 109 517 517 HOH HOH . J 7 HOH A 110 518 518 HOH HOH . J 7 HOH A 111 519 519 HOH HOH . J 7 HOH A 112 520 520 HOH HOH . J 7 HOH A 113 521 521 HOH HOH . J 7 HOH A 114 522 522 HOH HOH . J 7 HOH A 115 523 523 HOH HOH . J 7 HOH A 116 524 524 HOH HOH . J 7 HOH A 117 525 525 HOH HOH . J 7 HOH A 118 526 526 HOH HOH . J 7 HOH A 119 527 527 HOH HOH . J 7 HOH A 120 528 528 HOH HOH . J 7 HOH A 121 529 529 HOH HOH . J 7 HOH A 122 530 530 HOH HOH . J 7 HOH A 123 531 531 HOH HOH . J 7 HOH A 124 532 532 HOH HOH . J 7 HOH A 125 533 533 HOH HOH . J 7 HOH A 126 534 534 HOH HOH . J 7 HOH A 127 535 535 HOH HOH . J 7 HOH A 128 536 536 HOH HOH . J 7 HOH A 129 537 537 HOH HOH . J 7 HOH A 130 538 538 HOH HOH . J 7 HOH A 131 539 539 HOH HOH . J 7 HOH A 132 540 540 HOH HOH . J 7 HOH A 133 541 541 HOH HOH . J 7 HOH A 134 542 542 HOH HOH . J 7 HOH A 135 543 543 HOH HOH . J 7 HOH A 136 544 544 HOH HOH . J 7 HOH A 137 545 545 HOH HOH . J 7 HOH A 138 546 546 HOH HOH . J 7 HOH A 139 547 547 HOH HOH . J 7 HOH A 140 548 548 HOH HOH . J 7 HOH A 141 549 549 HOH HOH . J 7 HOH A 142 550 550 HOH HOH . J 7 HOH A 143 551 551 HOH HOH . J 7 HOH A 144 552 552 HOH HOH . J 7 HOH A 145 553 553 HOH HOH . J 7 HOH A 146 554 554 HOH HOH . J 7 HOH A 147 555 555 HOH HOH . J 7 HOH A 148 556 556 HOH HOH . J 7 HOH A 149 557 557 HOH HOH . J 7 HOH A 150 558 558 HOH HOH . J 7 HOH A 151 559 559 HOH HOH . J 7 HOH A 152 560 560 HOH HOH . J 7 HOH A 153 561 561 HOH HOH . J 7 HOH A 154 562 562 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O22 P33 . . . H 5 11.192 33.622 52.344 1 49.35 ? O22 P33 407 A 1 HETATM 2 C C21 P33 . . . H 5 12.088 33.532 51.225 1 47.99 ? C21 P33 407 A 1 HETATM 3 C C20 P33 . . . H 5 12.785 32.173 51.149 1 49.46 ? C20 P33 407 A 1 HETATM 4 O O19 P33 . . . H 5 13.282 31.909 49.823 1 52.46 ? O19 P33 407 A 1 HETATM 5 C C18 P33 . . . H 5 14.378 30.972 49.759 1 51.43 ? C18 P33 407 A 1 HETATM 6 C C17 P33 . . . H 5 15.163 31.181 48.467 1 51.85 ? C17 P33 407 A 1 HETATM 7 O O16 P33 . . . H 5 16.58 31.02 48.678 1 44.07 ? O16 P33 407 A 1 HETATM 8 C C15 P33 . . . H 5 17.068 29.69 48.503 1 46.09 ? C15 P33 407 A 1 HETATM 9 C C14 P33 . . . H 5 18.322 29.7 47.655 1 48.02 ? C14 P33 407 A 1 HETATM 10 O O13 P33 . . . H 5 18.505 28.423 47.035 1 59.81 ? O13 P33 407 A 1 HETATM 11 C C12 P33 . . . H 5 19.872 28.056 46.812 1 61.58 ? C12 P33 407 A 1 HETATM 12 C C11 P33 . . . H 5 20.581 28.939 45.783 1 61.28 ? C11 P33 407 A 1 HETATM 13 O O10 P33 . . . H 5 21.947 28.521 45.726 1 61.03 ? O10 P33 407 A 1 HETATM 14 C C9 P33 . . . H 5 22.848 29.448 45.114 1 50.39 ? C9 P33 407 A 1 HETATM 15 C C8 P33 . . . H 5 24.289 28.99 45.32 1 43.47 ? C8 P33 407 A 1 HETATM 16 O O7 P33 . . . H 5 24.963 28.704 44.083 1 46.85 ? O7 P33 407 A 1 HETATM 17 C C6 P33 . . . H 5 24.836 27.36 43.625 1 53.31 ? C6 P33 407 A 1 HETATM 18 C C5 P33 . . . H 5 25.997 27.028 42.709 1 43.15 ? C5 P33 407 A 1 HETATM 19 O O4 P33 . . . H 5 27.081 26.625 43.533 1 43.26 ? O4 P33 407 A 1 HETATM 20 C C3 P33 . . . H 5 27.882 25.551 43.038 1 45.43 ? C3 P33 407 A 1 HETATM 21 C C2 P33 . . . H 5 27.253 24.194 43.355 1 51.2 ? C2 P33 407 A 1 HETATM 22 O O1 P33 . . . H 5 27.085 24.021 44.765 1 58.66 ? O1 P33 407 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 221 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 22 #