data_4Z5X # _model_server_result.job_id N2gJxbcTF32yE6g5BnL4uA _model_server_result.datetime_utc '2024-11-27 06:26:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4z5x # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":902}' # _entry.id 4Z5X # _exptl.entry_id 4Z5X _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 247.142 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "PYRIDOXAL-5'-PHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4Z5X _cell.length_a 128.486 _cell.length_b 128.486 _cell.length_c 116.634 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4Z5X _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ALA 142 A ALA 141 1_555 A N CSO 143 A CSO 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale2 A C CSO 143 A CSO 142 1_555 A N PHE 144 A PHE 143 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale3 A NZ LYS 681 A LYS 680 1_555 C C4A PLP . A PLP 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.421 ? # _chem_comp.formula 'C8 H10 N O6 P' _chem_comp.formula_weight 247.142 _chem_comp.id PLP _chem_comp.mon_nstd_flag . _chem_comp.name "PYRIDOXAL-5'-PHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'VITAMIN B6 Phosphate' # _atom_sites.entry_id 4Z5X _atom_sites.fract_transf_matrix[1][1] 0.007783 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007783 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008574 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GDE A 1 901 1 GDE GDE . C 3 PLP A 1 902 1680 PLP PLP . D 4 HOH A 1 1001 135 HOH HOH . D 4 HOH A 2 1002 175 HOH HOH . D 4 HOH A 3 1003 31 HOH HOH . D 4 HOH A 4 1004 81 HOH HOH . D 4 HOH A 5 1005 157 HOH HOH . D 4 HOH A 6 1006 13 HOH HOH . D 4 HOH A 7 1007 167 HOH HOH . D 4 HOH A 8 1008 124 HOH HOH . D 4 HOH A 9 1009 138 HOH HOH . D 4 HOH A 10 1010 72 HOH HOH . D 4 HOH A 11 1011 64 HOH HOH . D 4 HOH A 12 1012 22 HOH HOH . D 4 HOH A 13 1013 70 HOH HOH . D 4 HOH A 14 1014 79 HOH HOH . D 4 HOH A 15 1015 198 HOH HOH . D 4 HOH A 16 1016 110 HOH HOH . D 4 HOH A 17 1017 133 HOH HOH . D 4 HOH A 18 1018 160 HOH HOH . D 4 HOH A 19 1019 45 HOH HOH . D 4 HOH A 20 1020 53 HOH HOH . D 4 HOH A 21 1021 19 HOH HOH . D 4 HOH A 22 1022 111 HOH HOH . D 4 HOH A 23 1023 67 HOH HOH . D 4 HOH A 24 1024 192 HOH HOH . D 4 HOH A 25 1025 206 HOH HOH . D 4 HOH A 26 1026 38 HOH HOH . D 4 HOH A 27 1027 171 HOH HOH . D 4 HOH A 28 1028 129 HOH HOH . D 4 HOH A 29 1029 99 HOH HOH . D 4 HOH A 30 1030 61 HOH HOH . D 4 HOH A 31 1031 37 HOH HOH . D 4 HOH A 32 1032 84 HOH HOH . D 4 HOH A 33 1033 172 HOH HOH . D 4 HOH A 34 1034 187 HOH HOH . D 4 HOH A 35 1035 199 HOH HOH . D 4 HOH A 36 1036 28 HOH HOH . D 4 HOH A 37 1037 16 HOH HOH . D 4 HOH A 38 1038 87 HOH HOH . D 4 HOH A 39 1039 65 HOH HOH . D 4 HOH A 40 1040 18 HOH HOH . D 4 HOH A 41 1041 140 HOH HOH . D 4 HOH A 42 1042 156 HOH HOH . D 4 HOH A 43 1043 101 HOH HOH . D 4 HOH A 44 1044 176 HOH HOH . D 4 HOH A 45 1045 108 HOH HOH . D 4 HOH A 46 1046 180 HOH HOH . D 4 HOH A 47 1047 196 HOH HOH . D 4 HOH A 48 1048 55 HOH HOH . D 4 HOH A 49 1049 169 HOH HOH . D 4 HOH A 50 1050 211 HOH HOH . D 4 HOH A 51 1051 142 HOH HOH . D 4 HOH A 52 1052 30 HOH HOH . D 4 HOH A 53 1053 149 HOH HOH . D 4 HOH A 54 1054 205 HOH HOH . D 4 HOH A 55 1055 155 HOH HOH . D 4 HOH A 56 1056 121 HOH HOH . D 4 HOH A 57 1057 177 HOH HOH . D 4 HOH A 58 1058 148 HOH HOH . D 4 HOH A 59 1059 107 HOH HOH . D 4 HOH A 60 1060 77 HOH HOH . D 4 HOH A 61 1061 62 HOH HOH . D 4 HOH A 62 1062 46 HOH HOH . D 4 HOH A 63 1063 32 HOH HOH . D 4 HOH A 64 1064 83 HOH HOH . D 4 HOH A 65 1065 204 HOH HOH . D 4 HOH A 66 1066 159 HOH HOH . D 4 HOH A 67 1067 164 HOH HOH . D 4 HOH A 68 1068 98 HOH HOH . D 4 HOH A 69 1069 7 HOH HOH . D 4 HOH A 70 1070 48 HOH HOH . D 4 HOH A 71 1071 190 HOH HOH . D 4 HOH A 72 1072 144 HOH HOH . D 4 HOH A 73 1073 52 HOH HOH . D 4 HOH A 74 1074 120 HOH HOH . D 4 HOH A 75 1075 130 HOH HOH . D 4 HOH A 76 1076 125 HOH HOH . D 4 HOH A 77 1077 109 HOH HOH . D 4 HOH A 78 1078 193 HOH HOH . D 4 HOH A 79 1079 40 HOH HOH . D 4 HOH A 80 1080 74 HOH HOH . D 4 HOH A 81 1081 153 HOH HOH . D 4 HOH A 82 1082 14 HOH HOH . D 4 HOH A 83 1083 1 HOH HOH . D 4 HOH A 84 1084 212 HOH HOH . D 4 HOH A 85 1085 4 HOH HOH . D 4 HOH A 86 1086 131 HOH HOH . D 4 HOH A 87 1087 75 HOH HOH . D 4 HOH A 88 1088 207 HOH HOH . D 4 HOH A 89 1089 69 HOH HOH . D 4 HOH A 90 1090 118 HOH HOH . D 4 HOH A 91 1091 136 HOH HOH . D 4 HOH A 92 1092 82 HOH HOH . D 4 HOH A 93 1093 183 HOH HOH . D 4 HOH A 94 1094 42 HOH HOH . D 4 HOH A 95 1095 123 HOH HOH . D 4 HOH A 96 1096 11 HOH HOH . D 4 HOH A 97 1097 185 HOH HOH . D 4 HOH A 98 1098 106 HOH HOH . D 4 HOH A 99 1099 128 HOH HOH . D 4 HOH A 100 1100 17 HOH HOH . D 4 HOH A 101 1101 117 HOH HOH . D 4 HOH A 102 1102 97 HOH HOH . D 4 HOH A 103 1103 186 HOH HOH . D 4 HOH A 104 1104 208 HOH HOH . D 4 HOH A 105 1105 96 HOH HOH . D 4 HOH A 106 1106 51 HOH HOH . D 4 HOH A 107 1107 6 HOH HOH . D 4 HOH A 108 1108 27 HOH HOH . D 4 HOH A 109 1109 162 HOH HOH . D 4 HOH A 110 1110 10 HOH HOH . D 4 HOH A 111 1111 163 HOH HOH . D 4 HOH A 112 1112 56 HOH HOH . D 4 HOH A 113 1113 202 HOH HOH . D 4 HOH A 114 1114 126 HOH HOH . D 4 HOH A 115 1115 59 HOH HOH . D 4 HOH A 116 1116 23 HOH HOH . D 4 HOH A 117 1117 21 HOH HOH . D 4 HOH A 118 1118 174 HOH HOH . D 4 HOH A 119 1119 178 HOH HOH . D 4 HOH A 120 1120 165 HOH HOH . D 4 HOH A 121 1121 145 HOH HOH . D 4 HOH A 122 1122 71 HOH HOH . D 4 HOH A 123 1123 33 HOH HOH . D 4 HOH A 124 1124 88 HOH HOH . D 4 HOH A 125 1125 150 HOH HOH . D 4 HOH A 126 1126 170 HOH HOH . D 4 HOH A 127 1127 158 HOH HOH . D 4 HOH A 128 1128 66 HOH HOH . D 4 HOH A 129 1129 36 HOH HOH . D 4 HOH A 130 1130 195 HOH HOH . D 4 HOH A 131 1131 139 HOH HOH . D 4 HOH A 132 1132 9 HOH HOH . D 4 HOH A 133 1133 115 HOH HOH . D 4 HOH A 134 1134 127 HOH HOH . D 4 HOH A 135 1135 209 HOH HOH . D 4 HOH A 136 1136 90 HOH HOH . D 4 HOH A 137 1137 41 HOH HOH . D 4 HOH A 138 1138 94 HOH HOH . D 4 HOH A 139 1139 114 HOH HOH . D 4 HOH A 140 1140 92 HOH HOH . D 4 HOH A 141 1141 78 HOH HOH . D 4 HOH A 142 1142 29 HOH HOH . D 4 HOH A 143 1143 43 HOH HOH . D 4 HOH A 144 1144 141 HOH HOH . D 4 HOH A 145 1145 122 HOH HOH . D 4 HOH A 146 1146 103 HOH HOH . D 4 HOH A 147 1147 3 HOH HOH . D 4 HOH A 148 1148 116 HOH HOH . D 4 HOH A 149 1149 44 HOH HOH . D 4 HOH A 150 1150 181 HOH HOH . D 4 HOH A 151 1151 80 HOH HOH . D 4 HOH A 152 1152 76 HOH HOH . D 4 HOH A 153 1153 112 HOH HOH . D 4 HOH A 154 1154 215 HOH HOH . D 4 HOH A 155 1155 39 HOH HOH . D 4 HOH A 156 1156 15 HOH HOH . D 4 HOH A 157 1157 194 HOH HOH . D 4 HOH A 158 1158 105 HOH HOH . D 4 HOH A 159 1159 203 HOH HOH . D 4 HOH A 160 1160 95 HOH HOH . D 4 HOH A 161 1161 49 HOH HOH . D 4 HOH A 162 1162 68 HOH HOH . D 4 HOH A 163 1163 89 HOH HOH . D 4 HOH A 164 1164 182 HOH HOH . D 4 HOH A 165 1165 113 HOH HOH . D 4 HOH A 166 1166 91 HOH HOH . D 4 HOH A 167 1167 60 HOH HOH . D 4 HOH A 168 1168 146 HOH HOH . D 4 HOH A 169 1169 54 HOH HOH . D 4 HOH A 170 1170 166 HOH HOH . D 4 HOH A 171 1171 47 HOH HOH . D 4 HOH A 172 1172 26 HOH HOH . D 4 HOH A 173 1173 168 HOH HOH . D 4 HOH A 174 1174 102 HOH HOH . D 4 HOH A 175 1175 8 HOH HOH . D 4 HOH A 176 1176 119 HOH HOH . D 4 HOH A 177 1177 161 HOH HOH . D 4 HOH A 178 1178 86 HOH HOH . D 4 HOH A 179 1179 85 HOH HOH . D 4 HOH A 180 1180 35 HOH HOH . D 4 HOH A 181 1181 197 HOH HOH . D 4 HOH A 182 1182 137 HOH HOH . D 4 HOH A 183 1183 201 HOH HOH . D 4 HOH A 184 1184 147 HOH HOH . D 4 HOH A 185 1185 191 HOH HOH . D 4 HOH A 186 1186 63 HOH HOH . D 4 HOH A 187 1187 134 HOH HOH . D 4 HOH A 188 1188 100 HOH HOH . D 4 HOH A 189 1189 188 HOH HOH . D 4 HOH A 190 1190 132 HOH HOH . D 4 HOH A 191 1191 210 HOH HOH . D 4 HOH A 192 1192 93 HOH HOH . D 4 HOH A 193 1193 50 HOH HOH . D 4 HOH A 194 1194 25 HOH HOH . D 4 HOH A 195 1195 218 HOH HOH . D 4 HOH A 196 1196 184 HOH HOH . D 4 HOH A 197 1197 213 HOH HOH . D 4 HOH A 198 1198 151 HOH HOH . D 4 HOH A 199 1199 20 HOH HOH . D 4 HOH A 200 1200 154 HOH HOH . D 4 HOH A 201 1201 214 HOH HOH . D 4 HOH A 202 1202 216 HOH HOH . D 4 HOH A 203 1203 217 HOH HOH . D 4 HOH A 204 1204 12 HOH HOH . D 4 HOH A 205 1205 57 HOH HOH . D 4 HOH A 206 1206 5 HOH HOH . D 4 HOH A 207 1207 104 HOH HOH . D 4 HOH A 208 1208 34 HOH HOH . D 4 HOH A 209 1209 58 HOH HOH . D 4 HOH A 210 1210 222 HOH HOH . D 4 HOH A 211 1211 24 HOH HOH . D 4 HOH A 212 1212 221 HOH HOH . D 4 HOH A 213 1213 152 HOH HOH . D 4 HOH A 214 1214 2 HOH HOH . D 4 HOH A 215 1215 220 HOH HOH . D 4 HOH A 216 1216 179 HOH HOH . D 4 HOH A 217 1217 143 HOH HOH . D 4 HOH A 218 1218 73 HOH HOH . D 4 HOH A 219 1219 173 HOH HOH . D 4 HOH A 220 1220 219 HOH HOH . D 4 HOH A 221 1221 189 HOH HOH . D 4 HOH A 222 1222 200 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 PLP . . . C 3 24.748 25.724 30.514 1 27.57 ? N1 PLP 902 A 1 HETATM 2 C C2 PLP . . . C 3 23.62 25.029 30.792 1 29.26 ? C2 PLP 902 A 1 HETATM 3 C C2A PLP . . . C 3 22.669 25.462 31.874 1 30.67 ? C2A PLP 902 A 1 HETATM 4 C C3 PLP . . . C 3 23.307 23.826 30.017 1 29.74 ? C3 PLP 902 A 1 HETATM 5 O O3 PLP . . . C 3 22.191 23.114 30.282 1 32.4 ? O3 PLP 902 A 1 HETATM 6 C C4 PLP . . . C 3 24.254 23.431 28.952 1 28.51 ? C4 PLP 902 A 1 HETATM 7 C C4A PLP . . . C 3 24.09 22.222 28.092 1 29.7 ? C4A PLP 902 A 1 HETATM 8 C C5 PLP . . . C 3 25.474 24.26 28.772 1 28.66 ? C5 PLP 902 A 1 HETATM 9 C C6 PLP . . . C 3 25.631 25.382 29.569 1 27.04 ? C6 PLP 902 A 1 HETATM 10 C C5A PLP . . . C 3 26.504 23.945 27.688 1 31.27 ? C5A PLP 902 A 1 HETATM 11 O O4P PLP . . . C 3 26.056 24.57 26.476 1 29.35 ? O4P PLP 902 A 1 HETATM 12 P P PLP . . . C 3 27.053 24.81 25.25 1 31.1 ? P PLP 902 A 1 HETATM 13 O O1P PLP . . . C 3 26.189 25.49 24.223 1 32.15 ? O1P PLP 902 A 1 HETATM 14 O O2P PLP . . . C 3 28.073 25.716 25.837 1 30.92 ? O2P PLP 902 A 1 HETATM 15 O O3P PLP . . . C 3 27.549 23.444 24.855 1 30.49 ? O3P PLP 902 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 274 _model_server_stats.encode_time_ms 29 _model_server_stats.element_count 15 #