data_4Z5Z # _model_server_result.job_id YkkDqByEQEyQ2NUK1_B_cw _model_server_result.datetime_utc '2024-12-29 14:16:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4z5z # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":403}' # _entry.id 4Z5Z # _exptl.entry_id 4Z5Z _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 134.087 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description D-MALATE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4Z5Z _cell.length_a 86.15 _cell.length_b 86.15 _cell.length_c 106.959 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4Z5Z _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 20 A CYS 19 1_555 B ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.377 ? metalc ? metalc2 A SG CYS 22 A CYS 21 1_555 B ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.406 ? metalc ? metalc3 A SG CYS 25 A CYS 24 1_555 B ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.366 ? metalc ? metalc4 A OD2 ASP 93 A ASP 92 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? metalc ? metalc5 A OD1 ASN 273 A ASN 272 1_555 B ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.013 ? metalc ? metalc6 C MG MG . A MG 402 1_555 D O2 MLT . A MLT 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.928 ? # _chem_comp.formula 'C4 H6 O5' _chem_comp.formula_weight 134.087 _chem_comp.id MLT _chem_comp.mon_nstd_flag . _chem_comp.name D-MALATE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '(2R)-2-HYDROXYBUTANEDIOIC ACID;2-HYDROXY-SUCCINIC ACID' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 MLT doub 237 n n C1 O2 MLT sing 238 n n C1 C2 MLT sing 239 n n C2 O3 MLT sing 240 n n C2 C3 MLT sing 241 n n C2 H2 MLT sing 242 n n O3 HO3 MLT sing 243 n n C3 C4 MLT sing 244 n n C3 H31 MLT sing 245 n n C3 H32 MLT sing 246 n n C4 O4 MLT doub 247 n n C4 O5 MLT sing 248 n n O5 HO5 MLT sing 249 n n O2 H6 MLT sing 250 n n # _atom_sites.entry_id 4Z5Z _atom_sites.fract_transf_matrix[1][1] 0.011608 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011608 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009349 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 401 320 ZN ZN . C 3 MG A 1 402 1 MG MG . D 4 MLT A 1 403 1 MLT MLT . E 5 HOH A 1 501 16 HOH HOH . E 5 HOH A 2 502 25 HOH HOH . E 5 HOH A 3 503 37 HOH HOH . E 5 HOH A 4 504 4 HOH HOH . E 5 HOH A 5 505 11 HOH HOH . E 5 HOH A 6 506 33 HOH HOH . E 5 HOH A 7 507 28 HOH HOH . E 5 HOH A 8 508 31 HOH HOH . E 5 HOH A 9 509 1 HOH HOH . E 5 HOH A 10 510 20 HOH HOH . E 5 HOH A 11 511 10 HOH HOH . E 5 HOH A 12 512 35 HOH HOH . E 5 HOH A 13 513 34 HOH HOH . E 5 HOH A 14 514 15 HOH HOH . E 5 HOH A 15 515 40 HOH HOH . E 5 HOH A 16 516 53 HOH HOH . E 5 HOH A 17 517 49 HOH HOH . E 5 HOH A 18 518 36 HOH HOH . E 5 HOH A 19 519 51 HOH HOH . E 5 HOH A 20 520 52 HOH HOH . E 5 HOH A 21 521 21 HOH HOH . E 5 HOH A 22 522 14 HOH HOH . E 5 HOH A 23 523 50 HOH HOH . E 5 HOH A 24 524 13 HOH HOH . E 5 HOH A 25 525 26 HOH HOH . E 5 HOH A 26 526 39 HOH HOH . E 5 HOH A 27 527 43 HOH HOH . E 5 HOH A 28 528 29 HOH HOH . E 5 HOH A 29 529 48 HOH HOH . E 5 HOH A 30 530 6 HOH HOH . E 5 HOH A 31 531 56 HOH HOH . E 5 HOH A 32 532 22 HOH HOH . E 5 HOH A 33 533 44 HOH HOH . E 5 HOH A 34 534 24 HOH HOH . E 5 HOH A 35 535 27 HOH HOH . E 5 HOH A 36 536 41 HOH HOH . E 5 HOH A 37 537 55 HOH HOH . E 5 HOH A 38 538 38 HOH HOH . E 5 HOH A 39 539 5 HOH HOH . E 5 HOH A 40 540 12 HOH HOH . E 5 HOH A 41 541 8 HOH HOH . E 5 HOH A 42 542 3 HOH HOH . E 5 HOH A 43 543 32 HOH HOH . E 5 HOH A 44 544 9 HOH HOH . E 5 HOH A 45 545 23 HOH HOH . E 5 HOH A 46 546 46 HOH HOH . E 5 HOH A 47 547 17 HOH HOH . E 5 HOH A 48 548 47 HOH HOH . E 5 HOH A 49 549 2 HOH HOH . E 5 HOH A 50 550 7 HOH HOH . E 5 HOH A 51 551 42 HOH HOH . E 5 HOH A 52 552 57 HOH HOH . E 5 HOH A 53 553 19 HOH HOH . E 5 HOH A 54 554 30 HOH HOH . E 5 HOH A 55 555 18 HOH HOH . E 5 HOH A 56 556 45 HOH HOH . E 5 HOH A 57 557 54 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MLT . . . D 4 -15.626 -27.49 -13.037 1 77.47 ? C1 MLT 403 A 1 HETATM 2 O O1 MLT . . . D 4 -15.713 -28.516 -13.747 1 72.34 ? O1 MLT 403 A 1 HETATM 3 O O2 MLT . . . D 4 -16.346 -26.502 -13.3 1 76.69 ? O2 MLT 403 A 1 HETATM 4 C C2 MLT . . . D 4 -14.673 -27.454 -11.876 1 80.41 ? C2 MLT 403 A 1 HETATM 5 O O3 MLT . . . D 4 -15.367 -27.024 -10.724 1 82.72 ? O3 MLT 403 A 1 HETATM 6 C C3 MLT . . . D 4 -13.528 -26.489 -12.173 1 77.07 ? C3 MLT 403 A 1 HETATM 7 C C4 MLT . . . D 4 -12.186 -27.18 -12.057 1 73.91 ? C4 MLT 403 A 1 HETATM 8 O O4 MLT . . . D 4 -11.851 -28.056 -12.884 1 74.01 ? O4 MLT 403 A 1 HETATM 9 O O5 MLT . . . D 4 -11.388 -26.879 -11.141 1 68.55 ? O5 MLT 403 A 1 # _model_server_stats.io_time_ms 70 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 346 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 9 #