data_4Z63 # _model_server_result.job_id -vJkDj1GjPihgZNPnxlAhg _model_server_result.datetime_utc '2024-10-20 20:42:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4z63 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":701}' # _entry.id 4Z63 # _exptl.entry_id 4Z63 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 3 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 9 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4Z63 _cell.length_a 92.892 _cell.length_b 92.892 _cell.length_c 242.492 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4Z63 _symmetry.cell_setting ? _symmetry.Int_Tables_number 95 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 43 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N ? 3 F N N ? 3 G N N ? 3 H N N ? 3 I N N ? 3 J N N ? 3 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 8 A CYS 31 1_555 A SG CYS 39 A CYS 62 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf2 A SG CYS 40 A CYS 63 1_555 A SG CYS 47 A CYS 70 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf3 A SG CYS 145 A CYS 168 1_555 A SG CYS 172 A CYS 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf4 A SG CYS 289 A CYS 312 1_555 A SG CYS 316 A CYS 339 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? disulf ? disulf5 A SG CYS 608 A CYS 631 1_555 A SG CYS 615 A CYS 638 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? covale ? covale1 A ND2 ASN 83 A ASN 106 1_555 F C1 NAG . A NAG 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale2 A ND2 ASN 147 A ASN 170 1_555 I C1 NAG . A NAG 707 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale3 A ND2 ASN 278 A ASN 301 1_555 J C1 NAG . A NAG 708 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.453 ? covale ? covale4 A ND2 ASN 288 A ASN 311 1_555 G C1 NAG . A NAG 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? covale ? covale5 A ND2 ASN 350 A ASN 373 1_555 C C1 NAG . A NAG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale6 A ND2 ASN 355 A ASN 378 1_555 H C1 NAG . A NAG 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.461 ? covale ? covale7 A ND2 ASN 368 A ASN 391 1_555 E C1 NAG . A NAG 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? covale ? covale8 A ND2 ASN 449 A ASN 472 1_555 D C1 NAG . A NAG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale9 B C TYS 1 P TYS 28 1_555 B N ILE 2 P ILE 29 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale10 B C ILE 2 P ILE 29 1_555 B N TYS 3 P TYS 30 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale11 B C TYS 3 P TYS 30 1_555 B N THR 4 P THR 31 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.316 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 237 n n C1 O1 NAG sing 238 n n C1 O5 NAG sing 239 n n C1 H1 NAG sing 240 n n C2 C3 NAG sing 241 n n C2 N2 NAG sing 242 n n C2 H2 NAG sing 243 n n C3 C4 NAG sing 244 n n C3 O3 NAG sing 245 n n C3 H3 NAG sing 246 n n C4 C5 NAG sing 247 n n C4 O4 NAG sing 248 n n C4 H4 NAG sing 249 n n C5 C6 NAG sing 250 n n C5 O5 NAG sing 251 n n C5 H5 NAG sing 252 n n C6 O6 NAG sing 253 n n C6 H61 NAG sing 254 n n C6 H62 NAG sing 255 n n C7 C8 NAG sing 256 n n C7 N2 NAG sing 257 n n C7 O7 NAG doub 258 n n C8 H81 NAG sing 259 n n C8 H82 NAG sing 260 n n C8 H83 NAG sing 261 n n N2 HN2 NAG sing 262 n n O1 HO1 NAG sing 263 n n O3 HO3 NAG sing 264 n n O4 HO4 NAG sing 265 n n O6 HO6 NAG sing 266 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 4Z63 _atom_sites.fract_transf_matrix[1][1] 0.010765 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010765 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004124 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 NAG A 1 701 1 NAG NAG . D 3 NAG A 1 702 2 NAG NAG . E 3 NAG A 1 703 3 NAG NAG . F 3 NAG A 1 704 4 NAG NAG . G 3 NAG A 1 705 5 NAG NAG . H 3 NAG A 1 706 6 NAG NAG . I 3 NAG A 1 707 7 NAG NAG . J 3 NAG A 1 708 8 NAG NAG . K 3 NAG A 1 709 9 NAG NAG . L 4 HOH A 1 801 25 HOH HOH . L 4 HOH A 2 802 8 HOH HOH . L 4 HOH A 3 803 3 HOH HOH . L 4 HOH A 4 804 57 HOH HOH . L 4 HOH A 5 805 51 HOH HOH . L 4 HOH A 6 806 22 HOH HOH . L 4 HOH A 7 807 43 HOH HOH . L 4 HOH A 8 808 1 HOH HOH . L 4 HOH A 9 809 65 HOH HOH . L 4 HOH A 10 810 115 HOH HOH . L 4 HOH A 11 811 58 HOH HOH . L 4 HOH A 12 812 108 HOH HOH . L 4 HOH A 13 813 4 HOH HOH . L 4 HOH A 14 814 34 HOH HOH . L 4 HOH A 15 815 138 HOH HOH . L 4 HOH A 16 816 127 HOH HOH . L 4 HOH A 17 817 20 HOH HOH . L 4 HOH A 18 818 70 HOH HOH . L 4 HOH A 19 819 145 HOH HOH . L 4 HOH A 20 820 33 HOH HOH . L 4 HOH A 21 821 94 HOH HOH . L 4 HOH A 22 822 88 HOH HOH . L 4 HOH A 23 823 39 HOH HOH . L 4 HOH A 24 824 38 HOH HOH . L 4 HOH A 25 825 136 HOH HOH . L 4 HOH A 26 826 45 HOH HOH . L 4 HOH A 27 827 90 HOH HOH . L 4 HOH A 28 828 97 HOH HOH . L 4 HOH A 29 829 42 HOH HOH . L 4 HOH A 30 830 81 HOH HOH . L 4 HOH A 31 831 114 HOH HOH . L 4 HOH A 32 832 36 HOH HOH . L 4 HOH A 33 833 9 HOH HOH . L 4 HOH A 34 834 103 HOH HOH . L 4 HOH A 35 835 40 HOH HOH . L 4 HOH A 36 836 10 HOH HOH . L 4 HOH A 37 837 47 HOH HOH . L 4 HOH A 38 838 6 HOH HOH . L 4 HOH A 39 839 11 HOH HOH . L 4 HOH A 40 840 16 HOH HOH . L 4 HOH A 41 841 17 HOH HOH . L 4 HOH A 42 842 102 HOH HOH . L 4 HOH A 43 843 28 HOH HOH . L 4 HOH A 44 844 50 HOH HOH . L 4 HOH A 45 845 37 HOH HOH . L 4 HOH A 46 846 133 HOH HOH . L 4 HOH A 47 847 27 HOH HOH . L 4 HOH A 48 848 89 HOH HOH . L 4 HOH A 49 849 80 HOH HOH . L 4 HOH A 50 850 76 HOH HOH . L 4 HOH A 51 851 30 HOH HOH . L 4 HOH A 52 852 54 HOH HOH . L 4 HOH A 53 853 82 HOH HOH . L 4 HOH A 54 854 74 HOH HOH . L 4 HOH A 55 855 60 HOH HOH . L 4 HOH A 56 856 139 HOH HOH . L 4 HOH A 57 857 140 HOH HOH . L 4 HOH A 58 858 144 HOH HOH . L 4 HOH A 59 859 101 HOH HOH . L 4 HOH A 60 860 32 HOH HOH . L 4 HOH A 61 861 21 HOH HOH . L 4 HOH A 62 862 73 HOH HOH . L 4 HOH A 63 863 5 HOH HOH . L 4 HOH A 64 864 41 HOH HOH . L 4 HOH A 65 865 23 HOH HOH . L 4 HOH A 66 866 134 HOH HOH . L 4 HOH A 67 867 146 HOH HOH . L 4 HOH A 68 868 105 HOH HOH . L 4 HOH A 69 869 19 HOH HOH . L 4 HOH A 70 870 53 HOH HOH . L 4 HOH A 71 871 71 HOH HOH . L 4 HOH A 72 872 12 HOH HOH . L 4 HOH A 73 873 131 HOH HOH . L 4 HOH A 74 874 31 HOH HOH . L 4 HOH A 75 875 49 HOH HOH . L 4 HOH A 76 876 18 HOH HOH . L 4 HOH A 77 877 68 HOH HOH . L 4 HOH A 78 878 44 HOH HOH . L 4 HOH A 79 879 26 HOH HOH . L 4 HOH A 80 880 64 HOH HOH . L 4 HOH A 81 881 77 HOH HOH . L 4 HOH A 82 882 13 HOH HOH . L 4 HOH A 83 883 14 HOH HOH . L 4 HOH A 84 884 52 HOH HOH . L 4 HOH A 85 885 130 HOH HOH . L 4 HOH A 86 886 118 HOH HOH . L 4 HOH A 87 887 135 HOH HOH . L 4 HOH A 88 888 48 HOH HOH . L 4 HOH A 89 889 128 HOH HOH . L 4 HOH A 90 890 24 HOH HOH . L 4 HOH A 91 891 147 HOH HOH . L 4 HOH A 92 892 142 HOH HOH . L 4 HOH A 93 893 46 HOH HOH . L 4 HOH A 94 894 72 HOH HOH . L 4 HOH A 95 895 87 HOH HOH . L 4 HOH A 96 896 109 HOH HOH . L 4 HOH A 97 897 61 HOH HOH . L 4 HOH A 98 898 141 HOH HOH . L 4 HOH A 99 899 93 HOH HOH . L 4 HOH A 100 900 96 HOH HOH . L 4 HOH A 101 901 7 HOH HOH . L 4 HOH A 102 902 117 HOH HOH . L 4 HOH A 103 903 66 HOH HOH . L 4 HOH A 104 904 75 HOH HOH . L 4 HOH A 105 905 56 HOH HOH . L 4 HOH A 106 906 99 HOH HOH . L 4 HOH A 107 907 83 HOH HOH . L 4 HOH A 108 908 116 HOH HOH . L 4 HOH A 109 909 119 HOH HOH . L 4 HOH A 110 910 84 HOH HOH . L 4 HOH A 111 911 69 HOH HOH . L 4 HOH A 112 912 148 HOH HOH . L 4 HOH A 113 913 29 HOH HOH . L 4 HOH A 114 914 124 HOH HOH . L 4 HOH A 115 915 125 HOH HOH . L 4 HOH A 116 916 107 HOH HOH . L 4 HOH A 117 917 129 HOH HOH . L 4 HOH A 118 918 137 HOH HOH . L 4 HOH A 119 919 126 HOH HOH . L 4 HOH A 120 920 106 HOH HOH . L 4 HOH A 121 921 104 HOH HOH . L 4 HOH A 122 922 59 HOH HOH . L 4 HOH A 123 923 86 HOH HOH . L 4 HOH A 124 924 95 HOH HOH . L 4 HOH A 125 925 78 HOH HOH . L 4 HOH A 126 926 62 HOH HOH . L 4 HOH A 127 927 100 HOH HOH . L 4 HOH A 128 928 149 HOH HOH . L 4 HOH A 129 929 55 HOH HOH . L 4 HOH A 130 930 79 HOH HOH . L 4 HOH A 131 931 110 HOH HOH . L 4 HOH A 132 932 113 HOH HOH . L 4 HOH A 133 933 143 HOH HOH . L 4 HOH A 134 934 15 HOH HOH . L 4 HOH A 135 935 98 HOH HOH . L 4 HOH A 136 936 63 HOH HOH . L 4 HOH A 137 937 122 HOH HOH . L 4 HOH A 138 938 85 HOH HOH . L 4 HOH A 139 939 120 HOH HOH . L 4 HOH A 140 940 121 HOH HOH . L 4 HOH A 141 941 112 HOH HOH . L 4 HOH A 142 942 132 HOH HOH . L 4 HOH A 143 943 123 HOH HOH . M 4 HOH P 1 101 92 HOH HOH . M 4 HOH P 2 102 91 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . C 3 -22.206 29.015 34.391 1 5.29 ? C1 NAG 701 A 1 HETATM 2 C C2 NAG . . . C 3 -23.429 29.507 33.633 1 2.33 ? C2 NAG 701 A 1 HETATM 3 C C3 NAG . . . C 3 -24.573 28.54 33.793 1 2.62 ? C3 NAG 701 A 1 HETATM 4 C C4 NAG . . . C 3 -24.147 27.175 33.345 1 5.36 ? C4 NAG 701 A 1 HETATM 5 C C5 NAG . . . C 3 -22.899 26.694 34.07 1 8.47 ? C5 NAG 701 A 1 HETATM 6 C C6 NAG . . . C 3 -22.387 25.474 33.307 1 6.79 ? C6 NAG 701 A 1 HETATM 7 C C7 NAG . . . C 3 -23.401 31.922 33.691 1 4.86 ? C7 NAG 701 A 1 HETATM 8 C C8 NAG . . . C 3 -23.992 33.175 34.274 1 6.88 ? C8 NAG 701 A 1 HETATM 9 N N2 NAG . . . C 3 -23.868 30.777 34.16 1 2.91 ? N2 NAG 701 A 1 HETATM 10 O O3 NAG . . . C 3 -25.621 28.93 32.951 1 4.82 ? O3 NAG 701 A 1 HETATM 11 O O4 NAG . . . C 3 -25.219 26.289 33.544 1 7.38 ? O4 NAG 701 A 1 HETATM 12 O O5 NAG . . . C 3 -21.866 27.668 34.107 1 7.72 ? O5 NAG 701 A 1 HETATM 13 O O6 NAG . . . C 3 -21.224 24.945 33.905 1 10.45 ? O6 NAG 701 A 1 HETATM 14 O O7 NAG . . . C 3 -22.513 31.966 32.839 1 3.99 ? O7 NAG 701 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 278 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 14 #