data_4Z79
#
_model_server_result.job_id            LiuysfRfP25dqAkQOqy_eQ 
_model_server_result.datetime_utc      '2025-04-07 23:59:42' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4z79 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":509}' 
#
_entry.id    4Z79 
#
_exptl.entry_id    4Z79 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              22.99 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'SODIUM ION' 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4Z79 
_cell.length_a            49.019 
_cell.length_b            52.192 
_cell.length_c            75.89 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4Z79 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 I N N 
? 4 J N N 
? 4 K N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A O LEU 85 A LEU 383 1_555 J NA NA . A NA 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.698 ? 
metalc ? metalc2 A O LYS 86 A LYS 384 1_555 J NA NA . A NA 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.183 ? 
metalc ? metalc3 A OG SER 98 A SER 396 1_555 K NA NA . A NA 510 2_544 ? ? ? ? ? ? ? ? ? ? ? ? 2.952 ? 
metalc ? metalc4 I NA NA . A NA 508 1_555 L O HOH . A HOH 625 4_445 ? ? ? ? ? ? ? ? ? ? ? ? 3.028 ? 
metalc ? metalc5 I NA NA . A NA 508 1_555 L O HOH . A HOH 650 4_445 ? ? ? ? ? ? ? ? ? ? ? ? 2.699 ? 
metalc ? metalc6 I NA NA . A NA 508 1_555 L O HOH . A HOH 770 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.602 ? 
metalc ? metalc7 J NA NA . A NA 509 1_555 L O HOH . A HOH 690 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.728 ? 
metalc ? metalc8 K NA NA . A NA 510 1_555 L O HOH . A HOH 643 4_545 ? ? ? ? ? ? ? ? ? ? ? ? 2.883 ? 
metalc ? metalc9 K NA NA . A NA 510 1_555 L O HOH . A HOH 653 2_545 ? ? ? ? ? ? ? ? ? ? ? ? 2.697 ? 
#
_chem_comp.formula           'Na 1' 
_chem_comp.formula_weight    22.99 
_chem_comp.id                NA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'SODIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     4Z79 
_atom_sites.fract_transf_matrix[1][1]    0.0204 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01916 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.013177 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 GOL A 1 501 501 GOL GOL . 
C 2 GOL A 1 502 502 GOL GOL . 
D 2 GOL A 1 503 503 GOL GOL . 
E 2 GOL A 1 504 504 GOL GOL . 
F 2 GOL A 1 505 505 GOL GOL . 
G 2 GOL A 1 506 506 GOL GOL . 
H 3 CL A 1 507 507 CL CL . 
I 4 NA A 1 508 508 NA NA . 
J 4 NA A 1 509 509 NA NA . 
K 4 NA A 1 510 510 NA NA . 
L 5 HOH A 1 601 115 HOH HOH . 
L 5 HOH A 2 602 164 HOH HOH . 
L 5 HOH A 3 603 58 HOH HOH . 
L 5 HOH A 4 604 69 HOH HOH . 
L 5 HOH A 5 605 133 HOH HOH . 
L 5 HOH A 6 606 161 HOH HOH . 
L 5 HOH A 7 607 169 HOH HOH . 
L 5 HOH A 8 608 179 HOH HOH . 
L 5 HOH A 9 609 63 HOH HOH . 
L 5 HOH A 10 610 119 HOH HOH . 
L 5 HOH A 11 611 15 HOH HOH . 
L 5 HOH A 12 612 42 HOH HOH . 
L 5 HOH A 13 613 29 HOH HOH . 
L 5 HOH A 14 614 73 HOH HOH . 
L 5 HOH A 15 615 13 HOH HOH . 
L 5 HOH A 16 616 130 HOH HOH . 
L 5 HOH A 17 617 129 HOH HOH . 
L 5 HOH A 18 618 76 HOH HOH . 
L 5 HOH A 19 619 46 HOH HOH . 
L 5 HOH A 20 620 56 HOH HOH . 
L 5 HOH A 21 621 174 HOH HOH . 
L 5 HOH A 22 622 59 HOH HOH . 
L 5 HOH A 23 623 125 HOH HOH . 
L 5 HOH A 24 624 177 HOH HOH . 
L 5 HOH A 25 625 14 HOH HOH . 
L 5 HOH A 26 626 110 HOH HOH . 
L 5 HOH A 27 627 43 HOH HOH . 
L 5 HOH A 28 628 157 HOH HOH . 
L 5 HOH A 29 629 78 HOH HOH . 
L 5 HOH A 30 630 37 HOH HOH . 
L 5 HOH A 31 631 137 HOH HOH . 
L 5 HOH A 32 632 95 HOH HOH . 
L 5 HOH A 33 633 113 HOH HOH . 
L 5 HOH A 34 634 156 HOH HOH . 
L 5 HOH A 35 635 186 HOH HOH . 
L 5 HOH A 36 636 68 HOH HOH . 
L 5 HOH A 37 637 84 HOH HOH . 
L 5 HOH A 38 638 20 HOH HOH . 
L 5 HOH A 39 639 60 HOH HOH . 
L 5 HOH A 40 640 49 HOH HOH . 
L 5 HOH A 41 641 40 HOH HOH . 
L 5 HOH A 42 642 114 HOH HOH . 
L 5 HOH A 43 643 16 HOH HOH . 
L 5 HOH A 44 644 101 HOH HOH . 
L 5 HOH A 45 645 32 HOH HOH . 
L 5 HOH A 46 646 57 HOH HOH . 
L 5 HOH A 47 647 67 HOH HOH . 
L 5 HOH A 48 648 1 HOH HOH . 
L 5 HOH A 49 649 8 HOH HOH . 
L 5 HOH A 50 650 44 HOH HOH . 
L 5 HOH A 51 651 81 HOH HOH . 
L 5 HOH A 52 652 87 HOH HOH . 
L 5 HOH A 53 653 6 HOH HOH . 
L 5 HOH A 54 654 106 HOH HOH . 
L 5 HOH A 55 655 102 HOH HOH . 
L 5 HOH A 56 656 12 HOH HOH . 
L 5 HOH A 57 657 182 HOH HOH . 
L 5 HOH A 58 658 80 HOH HOH . 
L 5 HOH A 59 659 4 HOH HOH . 
L 5 HOH A 60 660 116 HOH HOH . 
L 5 HOH A 61 661 54 HOH HOH . 
L 5 HOH A 62 662 72 HOH HOH . 
L 5 HOH A 63 663 35 HOH HOH . 
L 5 HOH A 64 664 74 HOH HOH . 
L 5 HOH A 65 665 38 HOH HOH . 
L 5 HOH A 66 666 33 HOH HOH . 
L 5 HOH A 67 667 92 HOH HOH . 
L 5 HOH A 68 668 11 HOH HOH . 
L 5 HOH A 69 669 70 HOH HOH . 
L 5 HOH A 70 670 17 HOH HOH . 
L 5 HOH A 71 671 7 HOH HOH . 
L 5 HOH A 72 672 143 HOH HOH . 
L 5 HOH A 73 673 30 HOH HOH . 
L 5 HOH A 74 674 86 HOH HOH . 
L 5 HOH A 75 675 9 HOH HOH . 
L 5 HOH A 76 676 145 HOH HOH . 
L 5 HOH A 77 677 99 HOH HOH . 
L 5 HOH A 78 678 89 HOH HOH . 
L 5 HOH A 79 679 31 HOH HOH . 
L 5 HOH A 80 680 91 HOH HOH . 
L 5 HOH A 81 681 96 HOH HOH . 
L 5 HOH A 82 682 124 HOH HOH . 
L 5 HOH A 83 683 10 HOH HOH . 
L 5 HOH A 84 684 5 HOH HOH . 
L 5 HOH A 85 685 26 HOH HOH . 
L 5 HOH A 86 686 23 HOH HOH . 
L 5 HOH A 87 687 166 HOH HOH . 
L 5 HOH A 88 688 75 HOH HOH . 
L 5 HOH A 89 689 97 HOH HOH . 
L 5 HOH A 90 690 2 HOH HOH . 
L 5 HOH A 91 691 94 HOH HOH . 
L 5 HOH A 92 692 61 HOH HOH . 
L 5 HOH A 93 693 71 HOH HOH . 
L 5 HOH A 94 694 140 HOH HOH . 
L 5 HOH A 95 695 45 HOH HOH . 
L 5 HOH A 96 696 21 HOH HOH . 
L 5 HOH A 97 697 34 HOH HOH . 
L 5 HOH A 98 698 118 HOH HOH . 
L 5 HOH A 99 699 55 HOH HOH . 
L 5 HOH A 100 700 65 HOH HOH . 
L 5 HOH A 101 701 176 HOH HOH . 
L 5 HOH A 102 702 52 HOH HOH . 
L 5 HOH A 103 703 47 HOH HOH . 
L 5 HOH A 104 704 103 HOH HOH . 
L 5 HOH A 105 705 77 HOH HOH . 
L 5 HOH A 106 706 121 HOH HOH . 
L 5 HOH A 107 707 19 HOH HOH . 
L 5 HOH A 108 708 85 HOH HOH . 
L 5 HOH A 109 709 28 HOH HOH . 
L 5 HOH A 110 710 3 HOH HOH . 
L 5 HOH A 111 711 98 HOH HOH . 
L 5 HOH A 112 712 148 HOH HOH . 
L 5 HOH A 113 713 36 HOH HOH . 
L 5 HOH A 114 714 39 HOH HOH . 
L 5 HOH A 115 715 50 HOH HOH . 
L 5 HOH A 116 716 62 HOH HOH . 
L 5 HOH A 117 717 18 HOH HOH . 
L 5 HOH A 118 718 142 HOH HOH . 
L 5 HOH A 119 719 136 HOH HOH . 
L 5 HOH A 120 720 122 HOH HOH . 
L 5 HOH A 121 721 162 HOH HOH . 
L 5 HOH A 122 722 175 HOH HOH . 
L 5 HOH A 123 723 22 HOH HOH . 
L 5 HOH A 124 724 105 HOH HOH . 
L 5 HOH A 125 725 160 HOH HOH . 
L 5 HOH A 126 726 93 HOH HOH . 
L 5 HOH A 127 727 112 HOH HOH . 
L 5 HOH A 128 728 123 HOH HOH . 
L 5 HOH A 129 729 131 HOH HOH . 
L 5 HOH A 130 730 153 HOH HOH . 
L 5 HOH A 131 731 155 HOH HOH . 
L 5 HOH A 132 732 170 HOH HOH . 
L 5 HOH A 133 733 79 HOH HOH . 
L 5 HOH A 134 734 53 HOH HOH . 
L 5 HOH A 135 735 151 HOH HOH . 
L 5 HOH A 136 736 128 HOH HOH . 
L 5 HOH A 137 737 120 HOH HOH . 
L 5 HOH A 138 738 25 HOH HOH . 
L 5 HOH A 139 739 88 HOH HOH . 
L 5 HOH A 140 740 167 HOH HOH . 
L 5 HOH A 141 741 132 HOH HOH . 
L 5 HOH A 142 742 185 HOH HOH . 
L 5 HOH A 143 743 27 HOH HOH . 
L 5 HOH A 144 744 163 HOH HOH . 
L 5 HOH A 145 745 134 HOH HOH . 
L 5 HOH A 146 746 138 HOH HOH . 
L 5 HOH A 147 747 181 HOH HOH . 
L 5 HOH A 148 748 51 HOH HOH . 
L 5 HOH A 149 749 187 HOH HOH . 
L 5 HOH A 150 750 184 HOH HOH . 
L 5 HOH A 151 751 109 HOH HOH . 
L 5 HOH A 152 752 104 HOH HOH . 
L 5 HOH A 153 753 147 HOH HOH . 
L 5 HOH A 154 754 90 HOH HOH . 
L 5 HOH A 155 755 180 HOH HOH . 
L 5 HOH A 156 756 172 HOH HOH . 
L 5 HOH A 157 757 48 HOH HOH . 
L 5 HOH A 158 758 127 HOH HOH . 
L 5 HOH A 159 759 126 HOH HOH . 
L 5 HOH A 160 760 188 HOH HOH . 
L 5 HOH A 161 761 171 HOH HOH . 
L 5 HOH A 162 762 100 HOH HOH . 
L 5 HOH A 163 763 168 HOH HOH . 
L 5 HOH A 164 764 139 HOH HOH . 
L 5 HOH A 165 765 190 HOH HOH . 
L 5 HOH A 166 766 149 HOH HOH . 
L 5 HOH A 167 767 141 HOH HOH . 
L 5 HOH A 168 768 24 HOH HOH . 
L 5 HOH A 169 769 66 HOH HOH . 
L 5 HOH A 170 770 64 HOH HOH . 
L 5 HOH A 171 771 178 HOH HOH . 
L 5 HOH A 172 772 183 HOH HOH . 
L 5 HOH A 173 773 191 HOH HOH . 
L 5 HOH A 174 774 158 HOH HOH . 
L 5 HOH A 175 775 144 HOH HOH . 
L 5 HOH A 176 776 82 HOH HOH . 
L 5 HOH A 177 777 165 HOH HOH . 
L 5 HOH A 178 778 117 HOH HOH . 
L 5 HOH A 179 779 108 HOH HOH . 
L 5 HOH A 180 780 154 HOH HOH . 
L 5 HOH A 181 781 150 HOH HOH . 
L 5 HOH A 182 782 152 HOH HOH . 
L 5 HOH A 183 783 135 HOH HOH . 
L 5 HOH A 184 784 173 HOH HOH . 
L 5 HOH A 185 785 83 HOH HOH . 
L 5 HOH A 186 786 111 HOH HOH . 
L 5 HOH A 187 787 146 HOH HOH . 
L 5 HOH A 188 788 107 HOH HOH . 
L 5 HOH A 189 789 41 HOH HOH . 
L 5 HOH A 190 790 189 HOH HOH . 
L 5 HOH A 191 791 159 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           NA 
_atom_site.label_atom_id         NA 
_atom_site.label_comp_id         NA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         J 
_atom_site.label_entity_id       4 
_atom_site.Cartn_x               3.429 
_atom_site.Cartn_y               -9.166 
_atom_site.Cartn_z               -8.636 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        23.85 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          NA 
_atom_site.auth_comp_id          NA 
_atom_site.auth_seq_id           509 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    19 
_model_server_stats.query_time_ms           304 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           1 
#