data_4Z87 # _model_server_result.job_id Vgod69qRY3EzUU3xAlQESQ _model_server_result.datetime_utc '2024-11-22 04:18:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4z87 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"R","auth_seq_id":602}' # _entry.id 4Z87 # _exptl.entry_id 4Z87 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 443.201 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "GUANOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 12 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4Z87 _cell.length_a 122.042 _cell.length_b 122.042 _cell.length_c 147.613 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4Z87 _symmetry.cell_setting ? _symmetry.Int_Tables_number 75 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 4' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA OCTAMERIC 8 software_defined_assembly 1 PISA OCTAMERIC 8 software_defined_assembly 2 PISA OCTAMERIC 8 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,G,H,I,J,K,L,M,N,O,P,CA,DA 1 1,2,3,4 C,Q,R,S,T,U,V,W,EA 2 1,5,6,7 D,X,Y,Z,AA,BA,FA 2 8,9,10,11 D,X,Y,Z,AA,BA,FA 3 1,7,5,6 C,Q,R,S,T,U,V,W,EA 3 12,13,14,15 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -y,x,z 0 -1 0 1 0 0 0 0 1 0 0 0 4 'crystal symmetry operation' 4_555 y,-x,z 0 1 0 -1 0 0 0 0 1 0 0 0 5 'crystal symmetry operation' 2_645 -x+1,-y-1,z -1 0 0 0 -1 0 0 0 1 122.042 -122.042 0 6 'crystal symmetry operation' 3_545 -y,x-1,z 0 -1 0 1 0 0 0 0 1 0 -122.042 0 7 'crystal symmetry operation' 4_655 y+1,-x,z 0 1 0 -1 0 0 0 0 1 122.042 0 0 8 'crystal symmetry operation' 1_554 x,y,z-1 1 0 0 0 1 0 0 0 1 0 0 -147.613 9 'crystal symmetry operation' 2_644 -x+1,-y-1,z-1 -1 0 0 0 -1 0 0 0 1 122.042 -122.042 -147.613 10 'crystal symmetry operation' 3_544 -y,x-1,z-1 0 -1 0 1 0 0 0 0 1 0 -122.042 -147.613 11 'crystal symmetry operation' 4_654 y+1,-x,z-1 0 1 0 -1 0 0 0 0 1 122.042 0 -147.613 12 'crystal symmetry operation' 3_546 -y,x-1,z+1 0 -1 0 1 0 0 0 0 1 0 -122.042 147.613 13 'crystal symmetry operation' 1_556 x,y,z+1 1 0 0 0 1 0 0 0 1 0 0 147.613 14 'crystal symmetry operation' 2_646 -x+1,-y-1,z+1 -1 0 0 0 -1 0 0 0 1 122.042 -122.042 147.613 15 'crystal symmetry operation' 4_656 y+1,-x,z+1 0 1 0 -1 0 0 0 0 1 122.042 0 147.613 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 G N N ? 3 H N N ? 3 L N N ? 3 M N N ? 3 N N N ? 3 R N N ? 3 S N N ? 3 T N N ? 3 Y N N ? 3 Z N N ? 3 AA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O GLY 332 A GLY 329 1_555 I K K . A K 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.542 ? metalc ? metalc2 A O GLY 334 A GLY 331 1_555 I K K . A K 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.392 ? metalc ? metalc3 A O CYS 337 A CYS 334 1_555 I K K . A K 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.549 ? metalc ? metalc4 A O GLU 510 A GLU 507 1_555 I K K . A K 605 3_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.905 ? metalc ? metalc5 A O GLY 511 A GLY 508 1_555 I K K . A K 605 3_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.863 ? metalc ? metalc6 A O GLY 512 A GLY 509 1_555 I K K . A K 605 3_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.892 ? metalc ? metalc7 B O GLY 332 B GLY 329 1_555 O K K . B K 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.734 ? metalc ? metalc8 B O GLY 334 B GLY 331 1_555 O K K . B K 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.501 ? metalc ? metalc9 B O CYS 337 B CYS 334 1_555 O K K . B K 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.61 ? metalc ? metalc10 B O GLU 510 B GLU 507 1_555 O K K . B K 605 4_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.944 ? metalc ? metalc11 B O GLY 511 B GLY 508 1_555 O K K . B K 605 4_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.84 ? metalc ? metalc12 B O GLY 512 B GLY 509 1_555 O K K . B K 605 4_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.839 ? metalc ? metalc13 C O GLY 332 C GLY 329 1_555 U K K . C K 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.631 ? metalc ? metalc14 C O GLY 334 C GLY 331 1_555 U K K . C K 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.381 ? metalc ? metalc15 C O CYS 337 C CYS 334 1_555 U K K . C K 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.713 ? metalc ? metalc16 C O GLU 510 C GLU 507 1_555 U K K . C K 605 3_545 ? ? ? ? ? ? ? ? ? ? ? ? 2.737 ? metalc ? metalc17 C O GLY 511 C GLY 508 1_555 U K K . C K 605 3_545 ? ? ? ? ? ? ? ? ? ? ? ? 2.837 ? metalc ? metalc18 C O GLY 512 C GLY 509 1_555 U K K . C K 605 3_545 ? ? ? ? ? ? ? ? ? ? ? ? 2.776 ? metalc ? metalc19 D O GLY 332 D GLY 329 1_555 BA K K . D K 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.633 ? metalc ? metalc20 D O GLY 334 D GLY 331 1_555 BA K K . D K 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.583 ? metalc ? metalc21 D O CYS 337 D CYS 334 1_555 BA K K . D K 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.463 ? metalc ? metalc22 D O GLU 510 D GLU 507 1_555 BA K K . D K 604 4_655 ? ? ? ? ? ? ? ? ? ? ? ? 2.893 ? metalc ? metalc23 D O GLY 511 D GLY 508 1_555 BA K K . D K 604 4_655 ? ? ? ? ? ? ? ? ? ? ? ? 2.814 ? metalc ? metalc24 D O GLY 512 D GLY 509 1_555 BA K K . D K 604 4_655 ? ? ? ? ? ? ? ? ? ? ? ? 2.931 ? # _chem_comp.formula 'C10 H15 N5 O11 P2' _chem_comp.formula_weight 443.201 _chem_comp.id GDP _chem_comp.mon_nstd_flag n _chem_comp.name "GUANOSINE-5'-DIPHOSPHATE" _chem_comp.type 'rna linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PB O1B GDP doub 129 n n PB O2B GDP sing 130 n n PB O3B GDP sing 131 n n PB O3A GDP sing 132 n n O2B HOB2 GDP sing 133 n n O3B HOB3 GDP sing 134 n n O3A PA GDP sing 135 n n PA O1A GDP doub 136 n n PA O2A GDP sing 137 n n PA O5' GDP sing 138 n n O2A HOA2 GDP sing 139 n n O5' C5' GDP sing 140 n n C5' C4' GDP sing 141 n n C5' H5' GDP sing 142 n n C5' "H5''" GDP sing 143 n n C4' O4' GDP sing 144 n n C4' C3' GDP sing 145 n n C4' H4' GDP sing 146 n n O4' C1' GDP sing 147 n n C3' O3' GDP sing 148 n n C3' C2' GDP sing 149 n n C3' H3' GDP sing 150 n n O3' HO3' GDP sing 151 n n C2' O2' GDP sing 152 n n C2' C1' GDP sing 153 n n C2' H2' GDP sing 154 n n O2' HO2' GDP sing 155 n n C1' N9 GDP sing 156 n n C1' H1' GDP sing 157 n n N9 C8 GDP sing 158 n y N9 C4 GDP sing 159 n y C8 N7 GDP doub 160 n y C8 H8 GDP sing 161 n n N7 C5 GDP sing 162 n y C5 C6 GDP sing 163 n n C5 C4 GDP doub 164 n y C6 O6 GDP doub 165 n n C6 N1 GDP sing 166 n n N1 C2 GDP sing 167 n n N1 HN1 GDP sing 168 n n C2 N2 GDP sing 169 n n C2 N3 GDP doub 170 n n N2 HN21 GDP sing 171 n n N2 HN22 GDP sing 172 n n N3 C4 GDP sing 173 n n # _atom_sites.entry_id 4Z87 _atom_sites.fract_transf_matrix[1][1] 0.008194 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008194 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006774 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 5GP A 1 601 600 5GP 5GP . F 3 GDP A 1 602 601 GDP GDP . G 3 GDP A 1 603 602 GDP GDP . H 3 GDP A 1 604 603 GDP GDP . I 4 K A 1 605 604 K K . J 5 ACT A 1 606 700 ACT ACY . K 2 5GP B 1 601 600 5GP 5GP . L 3 GDP B 1 602 601 GDP GDP . M 3 GDP B 1 603 602 GDP GDP . N 3 GDP B 1 604 603 GDP GDP . O 4 K B 1 605 604 K K . P 5 ACT B 1 606 700 ACT ACY . Q 2 5GP C 1 601 600 5GP 5GP . R 3 GDP C 1 602 601 GDP GDP . S 3 GDP C 1 603 602 GDP GDP . T 3 GDP C 1 604 603 GDP GDP . U 4 K C 1 605 604 K K . V 5 ACT C 1 606 700 ACT ACY . W 5 ACT C 1 607 702 ACT ACY . X 2 5GP D 1 600 600 5GP 5GP . Y 3 GDP D 1 601 601 GDP GDP . Z 3 GDP D 1 602 602 GDP GDP . AA 3 GDP D 1 603 603 GDP GDP . BA 4 K D 1 604 604 K K . CA 6 HOH A 1 701 553 HOH HOH . CA 6 HOH A 2 702 409 HOH HOH . CA 6 HOH A 3 703 491 HOH HOH . CA 6 HOH A 4 704 505 HOH HOH . CA 6 HOH A 5 705 142 HOH HOH . CA 6 HOH A 6 706 35 HOH HOH . CA 6 HOH A 7 707 333 HOH HOH . CA 6 HOH A 8 708 19 HOH HOH . CA 6 HOH A 9 709 277 HOH HOH . CA 6 HOH A 10 710 68 HOH HOH . CA 6 HOH A 11 711 38 HOH HOH . CA 6 HOH A 12 712 146 HOH HOH . CA 6 HOH A 13 713 25 HOH HOH . CA 6 HOH A 14 714 263 HOH HOH . CA 6 HOH A 15 715 201 HOH HOH . CA 6 HOH A 16 716 130 HOH HOH . CA 6 HOH A 17 717 55 HOH HOH . CA 6 HOH A 18 718 230 HOH HOH . CA 6 HOH A 19 719 552 HOH HOH . CA 6 HOH A 20 720 207 HOH HOH . CA 6 HOH A 21 721 89 HOH HOH . CA 6 HOH A 22 722 172 HOH HOH . CA 6 HOH A 23 723 187 HOH HOH . CA 6 HOH A 24 724 334 HOH HOH . CA 6 HOH A 25 725 345 HOH HOH . CA 6 HOH A 26 726 21 HOH HOH . CA 6 HOH A 27 727 17 HOH HOH . CA 6 HOH A 28 728 208 HOH HOH . CA 6 HOH A 29 729 121 HOH HOH . CA 6 HOH A 30 730 183 HOH HOH . CA 6 HOH A 31 731 416 HOH HOH . CA 6 HOH A 32 732 296 HOH HOH . CA 6 HOH A 33 733 171 HOH HOH . CA 6 HOH A 34 734 561 HOH HOH . CA 6 HOH A 35 735 7 HOH HOH . CA 6 HOH A 36 736 79 HOH HOH . CA 6 HOH A 37 737 116 HOH HOH . CA 6 HOH A 38 738 72 HOH HOH . CA 6 HOH A 39 739 69 HOH HOH . CA 6 HOH A 40 740 160 HOH HOH . CA 6 HOH A 41 741 213 HOH HOH . CA 6 HOH A 42 742 64 HOH HOH . CA 6 HOH A 43 743 82 HOH HOH . CA 6 HOH A 44 744 88 HOH HOH . CA 6 HOH A 45 745 15 HOH HOH . CA 6 HOH A 46 746 332 HOH HOH . CA 6 HOH A 47 747 226 HOH HOH . CA 6 HOH A 48 748 238 HOH HOH . CA 6 HOH A 49 749 105 HOH HOH . CA 6 HOH A 50 750 326 HOH HOH . CA 6 HOH A 51 751 276 HOH HOH . CA 6 HOH A 52 752 13 HOH HOH . CA 6 HOH A 53 753 10 HOH HOH . CA 6 HOH A 54 754 111 HOH HOH . CA 6 HOH A 55 755 125 HOH HOH . CA 6 HOH A 56 756 291 HOH HOH . CA 6 HOH A 57 757 440 HOH HOH . CA 6 HOH A 58 758 320 HOH HOH . CA 6 HOH A 59 759 104 HOH HOH . CA 6 HOH A 60 760 310 HOH HOH . CA 6 HOH A 61 761 556 HOH HOH . CA 6 HOH A 62 762 164 HOH HOH . CA 6 HOH A 63 763 196 HOH HOH . CA 6 HOH A 64 764 270 HOH HOH . CA 6 HOH A 65 765 45 HOH HOH . CA 6 HOH A 66 766 34 HOH HOH . CA 6 HOH A 67 767 41 HOH HOH . CA 6 HOH A 68 768 136 HOH HOH . CA 6 HOH A 69 769 99 HOH HOH . CA 6 HOH A 70 770 225 HOH HOH . CA 6 HOH A 71 771 273 HOH HOH . CA 6 HOH A 72 772 227 HOH HOH . CA 6 HOH A 73 773 23 HOH HOH . CA 6 HOH A 74 774 191 HOH HOH . CA 6 HOH A 75 775 246 HOH HOH . CA 6 HOH A 76 776 114 HOH HOH . CA 6 HOH A 77 777 120 HOH HOH . CA 6 HOH A 78 778 42 HOH HOH . CA 6 HOH A 79 779 209 HOH HOH . CA 6 HOH A 80 780 60 HOH HOH . CA 6 HOH A 81 781 285 HOH HOH . CA 6 HOH A 82 782 100 HOH HOH . CA 6 HOH A 83 783 151 HOH HOH . CA 6 HOH A 84 784 154 HOH HOH . CA 6 HOH A 85 785 54 HOH HOH . CA 6 HOH A 86 786 122 HOH HOH . CA 6 HOH A 87 787 176 HOH HOH . CA 6 HOH A 88 788 438 HOH HOH . CA 6 HOH A 89 789 167 HOH HOH . CA 6 HOH A 90 790 247 HOH HOH . CA 6 HOH A 91 791 148 HOH HOH . CA 6 HOH A 92 792 76 HOH HOH . CA 6 HOH A 93 793 221 HOH HOH . CA 6 HOH A 94 794 518 HOH HOH . CA 6 HOH A 95 795 555 HOH HOH . CA 6 HOH A 96 796 488 HOH HOH . CA 6 HOH A 97 797 319 HOH HOH . CA 6 HOH A 98 798 415 HOH HOH . CA 6 HOH A 99 799 210 HOH HOH . CA 6 HOH A 100 800 455 HOH HOH . CA 6 HOH A 101 801 94 HOH HOH . CA 6 HOH A 102 802 366 HOH HOH . CA 6 HOH A 103 803 451 HOH HOH . CA 6 HOH A 104 804 14 HOH HOH . CA 6 HOH A 105 805 418 HOH HOH . CA 6 HOH A 106 806 184 HOH HOH . CA 6 HOH A 107 807 384 HOH HOH . CA 6 HOH A 108 808 563 HOH HOH . CA 6 HOH A 109 809 50 HOH HOH . CA 6 HOH A 110 810 396 HOH HOH . CA 6 HOH A 111 811 365 HOH HOH . CA 6 HOH A 112 812 223 HOH HOH . CA 6 HOH A 113 813 204 HOH HOH . CA 6 HOH A 114 814 118 HOH HOH . CA 6 HOH A 115 815 450 HOH HOH . CA 6 HOH A 116 816 430 HOH HOH . CA 6 HOH A 117 817 413 HOH HOH . CA 6 HOH A 118 818 299 HOH HOH . CA 6 HOH A 119 819 286 HOH HOH . CA 6 HOH A 120 820 522 HOH HOH . CA 6 HOH A 121 821 398 HOH HOH . CA 6 HOH A 122 822 400 HOH HOH . CA 6 HOH A 123 823 340 HOH HOH . CA 6 HOH A 124 824 519 HOH HOH . CA 6 HOH A 125 825 492 HOH HOH . CA 6 HOH A 126 826 138 HOH HOH . CA 6 HOH A 127 827 454 HOH HOH . CA 6 HOH A 128 828 159 HOH HOH . CA 6 HOH A 129 829 224 HOH HOH . CA 6 HOH A 130 830 493 HOH HOH . CA 6 HOH A 131 831 434 HOH HOH . CA 6 HOH A 132 832 300 HOH HOH . CA 6 HOH A 133 833 305 HOH HOH . CA 6 HOH A 134 834 564 HOH HOH . CA 6 HOH A 135 835 449 HOH HOH . CA 6 HOH A 136 836 420 HOH HOH . CA 6 HOH A 137 837 453 HOH HOH . CA 6 HOH A 138 838 558 HOH HOH . CA 6 HOH A 139 839 520 HOH HOH . CA 6 HOH A 140 840 510 HOH HOH . CA 6 HOH A 141 841 487 HOH HOH . CA 6 HOH A 142 842 527 HOH HOH . CA 6 HOH A 143 843 502 HOH HOH . CA 6 HOH A 144 844 477 HOH HOH . CA 6 HOH A 145 845 452 HOH HOH . CA 6 HOH A 146 846 523 HOH HOH . CA 6 HOH A 147 847 298 HOH HOH . CA 6 HOH A 148 848 478 HOH HOH . CA 6 HOH A 149 849 314 HOH HOH . CA 6 HOH A 150 850 526 HOH HOH . DA 6 HOH B 1 701 535 HOH HOH . DA 6 HOH B 2 702 347 HOH HOH . DA 6 HOH B 3 703 411 HOH HOH . DA 6 HOH B 4 704 381 HOH HOH . DA 6 HOH B 5 705 85 HOH HOH . DA 6 HOH B 6 706 504 HOH HOH . DA 6 HOH B 7 707 524 HOH HOH . DA 6 HOH B 8 708 141 HOH HOH . DA 6 HOH B 9 709 28 HOH HOH . DA 6 HOH B 10 710 70 HOH HOH . DA 6 HOH B 11 711 548 HOH HOH . DA 6 HOH B 12 712 562 HOH HOH . DA 6 HOH B 13 713 216 HOH HOH . DA 6 HOH B 14 714 501 HOH HOH . DA 6 HOH B 15 715 271 HOH HOH . DA 6 HOH B 16 716 503 HOH HOH . DA 6 HOH B 17 717 197 HOH HOH . DA 6 HOH B 18 718 96 HOH HOH . DA 6 HOH B 19 719 24 HOH HOH . DA 6 HOH B 20 720 349 HOH HOH . DA 6 HOH B 21 721 512 HOH HOH . DA 6 HOH B 22 722 75 HOH HOH . DA 6 HOH B 23 723 444 HOH HOH . DA 6 HOH B 24 724 425 HOH HOH . DA 6 HOH B 25 725 33 HOH HOH . DA 6 HOH B 26 726 157 HOH HOH . DA 6 HOH B 27 727 112 HOH HOH . DA 6 HOH B 28 728 110 HOH HOH . DA 6 HOH B 29 729 9 HOH HOH . DA 6 HOH B 30 730 424 HOH HOH . DA 6 HOH B 31 731 307 HOH HOH . DA 6 HOH B 32 732 61 HOH HOH . DA 6 HOH B 33 733 364 HOH HOH . DA 6 HOH B 34 734 178 HOH HOH . DA 6 HOH B 35 735 22 HOH HOH . DA 6 HOH B 36 736 8 HOH HOH . DA 6 HOH B 37 737 202 HOH HOH . DA 6 HOH B 38 738 530 HOH HOH . DA 6 HOH B 39 739 115 HOH HOH . DA 6 HOH B 40 740 293 HOH HOH . DA 6 HOH B 41 741 128 HOH HOH . DA 6 HOH B 42 742 242 HOH HOH . DA 6 HOH B 43 743 74 HOH HOH . DA 6 HOH B 44 744 11 HOH HOH . DA 6 HOH B 45 745 266 HOH HOH . DA 6 HOH B 46 746 237 HOH HOH . DA 6 HOH B 47 747 194 HOH HOH . DA 6 HOH B 48 748 180 HOH HOH . DA 6 HOH B 49 749 131 HOH HOH . DA 6 HOH B 50 750 144 HOH HOH . DA 6 HOH B 51 751 264 HOH HOH . DA 6 HOH B 52 752 40 HOH HOH . DA 6 HOH B 53 753 236 HOH HOH . DA 6 HOH B 54 754 52 HOH HOH . DA 6 HOH B 55 755 397 HOH HOH . DA 6 HOH B 56 756 18 HOH HOH . DA 6 HOH B 57 757 91 HOH HOH . DA 6 HOH B 58 758 507 HOH HOH . DA 6 HOH B 59 759 186 HOH HOH . DA 6 HOH B 60 760 147 HOH HOH . DA 6 HOH B 61 761 46 HOH HOH . DA 6 HOH B 62 762 217 HOH HOH . DA 6 HOH B 63 763 382 HOH HOH . DA 6 HOH B 64 764 83 HOH HOH . DA 6 HOH B 65 765 93 HOH HOH . DA 6 HOH B 66 766 248 HOH HOH . DA 6 HOH B 67 767 155 HOH HOH . DA 6 HOH B 68 768 36 HOH HOH . DA 6 HOH B 69 769 229 HOH HOH . DA 6 HOH B 70 770 321 HOH HOH . DA 6 HOH B 71 771 410 HOH HOH . DA 6 HOH B 72 772 133 HOH HOH . DA 6 HOH B 73 773 43 HOH HOH . DA 6 HOH B 74 774 251 HOH HOH . DA 6 HOH B 75 775 77 HOH HOH . DA 6 HOH B 76 776 57 HOH HOH . DA 6 HOH B 77 777 220 HOH HOH . DA 6 HOH B 78 778 372 HOH HOH . DA 6 HOH B 79 779 534 HOH HOH . DA 6 HOH B 80 780 39 HOH HOH . DA 6 HOH B 81 781 73 HOH HOH . DA 6 HOH B 82 782 92 HOH HOH . DA 6 HOH B 83 783 448 HOH HOH . DA 6 HOH B 84 784 292 HOH HOH . DA 6 HOH B 85 785 258 HOH HOH . DA 6 HOH B 86 786 560 HOH HOH . DA 6 HOH B 87 787 81 HOH HOH . DA 6 HOH B 88 788 200 HOH HOH . DA 6 HOH B 89 789 205 HOH HOH . DA 6 HOH B 90 790 56 HOH HOH . DA 6 HOH B 91 791 149 HOH HOH . DA 6 HOH B 92 792 103 HOH HOH . DA 6 HOH B 93 793 318 HOH HOH . DA 6 HOH B 94 794 406 HOH HOH . DA 6 HOH B 95 795 243 HOH HOH . DA 6 HOH B 96 796 168 HOH HOH . DA 6 HOH B 97 797 428 HOH HOH . DA 6 HOH B 98 798 198 HOH HOH . DA 6 HOH B 99 799 371 HOH HOH . DA 6 HOH B 100 800 317 HOH HOH . DA 6 HOH B 101 801 322 HOH HOH . DA 6 HOH B 102 802 472 HOH HOH . DA 6 HOH B 103 803 551 HOH HOH . DA 6 HOH B 104 804 343 HOH HOH . DA 6 HOH B 105 805 135 HOH HOH . DA 6 HOH B 106 806 511 HOH HOH . DA 6 HOH B 107 807 182 HOH HOH . DA 6 HOH B 108 808 280 HOH HOH . DA 6 HOH B 109 809 101 HOH HOH . DA 6 HOH B 110 810 253 HOH HOH . DA 6 HOH B 111 811 290 HOH HOH . DA 6 HOH B 112 812 486 HOH HOH . DA 6 HOH B 113 813 483 HOH HOH . DA 6 HOH B 114 814 158 HOH HOH . DA 6 HOH B 115 815 304 HOH HOH . DA 6 HOH B 116 816 528 HOH HOH . DA 6 HOH B 117 817 521 HOH HOH . DA 6 HOH B 118 818 344 HOH HOH . DA 6 HOH B 119 819 189 HOH HOH . DA 6 HOH B 120 820 316 HOH HOH . DA 6 HOH B 121 821 274 HOH HOH . DA 6 HOH B 122 822 557 HOH HOH . DA 6 HOH B 123 823 475 HOH HOH . DA 6 HOH B 124 824 460 HOH HOH . DA 6 HOH B 125 825 433 HOH HOH . DA 6 HOH B 126 826 132 HOH HOH . DA 6 HOH B 127 827 559 HOH HOH . DA 6 HOH B 128 828 550 HOH HOH . DA 6 HOH B 129 829 529 HOH HOH . DA 6 HOH B 130 830 549 HOH HOH . DA 6 HOH B 131 831 402 HOH HOH . DA 6 HOH B 132 832 315 HOH HOH . DA 6 HOH B 133 833 531 HOH HOH . DA 6 HOH B 134 834 533 HOH HOH . DA 6 HOH B 135 835 480 HOH HOH . DA 6 HOH B 136 836 513 HOH HOH . DA 6 HOH B 137 837 363 HOH HOH . DA 6 HOH B 138 838 514 HOH HOH . DA 6 HOH B 139 839 474 HOH HOH . DA 6 HOH B 140 840 532 HOH HOH . EA 6 HOH C 1 701 414 HOH HOH . EA 6 HOH C 2 702 87 HOH HOH . EA 6 HOH C 3 703 214 HOH HOH . EA 6 HOH C 4 704 195 HOH HOH . EA 6 HOH C 5 705 199 HOH HOH . EA 6 HOH C 6 706 166 HOH HOH . EA 6 HOH C 7 707 49 HOH HOH . EA 6 HOH C 8 708 62 HOH HOH . EA 6 HOH C 9 709 539 HOH HOH . EA 6 HOH C 10 710 181 HOH HOH . EA 6 HOH C 11 711 90 HOH HOH . EA 6 HOH C 12 712 65 HOH HOH . EA 6 HOH C 13 713 464 HOH HOH . EA 6 HOH C 14 714 234 HOH HOH . EA 6 HOH C 15 715 162 HOH HOH . EA 6 HOH C 16 716 367 HOH HOH . EA 6 HOH C 17 717 536 HOH HOH . EA 6 HOH C 18 718 232 HOH HOH . EA 6 HOH C 19 719 29 HOH HOH . EA 6 HOH C 20 720 361 HOH HOH . EA 6 HOH C 21 721 235 HOH HOH . EA 6 HOH C 22 722 58 HOH HOH . EA 6 HOH C 23 723 66 HOH HOH . EA 6 HOH C 24 724 6 HOH HOH . EA 6 HOH C 25 725 336 HOH HOH . EA 6 HOH C 26 726 188 HOH HOH . EA 6 HOH C 27 727 126 HOH HOH . EA 6 HOH C 28 728 113 HOH HOH . EA 6 HOH C 29 729 127 HOH HOH . EA 6 HOH C 30 730 67 HOH HOH . EA 6 HOH C 31 731 109 HOH HOH . EA 6 HOH C 32 732 30 HOH HOH . EA 6 HOH C 33 733 249 HOH HOH . EA 6 HOH C 34 734 337 HOH HOH . EA 6 HOH C 35 735 124 HOH HOH . EA 6 HOH C 36 736 153 HOH HOH . EA 6 HOH C 37 737 269 HOH HOH . EA 6 HOH C 38 738 78 HOH HOH . EA 6 HOH C 39 739 358 HOH HOH . EA 6 HOH C 40 740 152 HOH HOH . EA 6 HOH C 41 741 139 HOH HOH . EA 6 HOH C 42 742 98 HOH HOH . EA 6 HOH C 43 743 489 HOH HOH . EA 6 HOH C 44 744 174 HOH HOH . EA 6 HOH C 45 745 272 HOH HOH . EA 6 HOH C 46 746 27 HOH HOH . EA 6 HOH C 47 747 252 HOH HOH . EA 6 HOH C 48 748 301 HOH HOH . EA 6 HOH C 49 749 123 HOH HOH . EA 6 HOH C 50 750 311 HOH HOH . EA 6 HOH C 51 751 134 HOH HOH . EA 6 HOH C 52 752 498 HOH HOH . EA 6 HOH C 53 753 161 HOH HOH . EA 6 HOH C 54 754 497 HOH HOH . EA 6 HOH C 55 755 268 HOH HOH . EA 6 HOH C 56 756 360 HOH HOH . EA 6 HOH C 57 757 465 HOH HOH . EA 6 HOH C 58 758 107 HOH HOH . EA 6 HOH C 59 759 466 HOH HOH . EA 6 HOH C 60 760 294 HOH HOH . EA 6 HOH C 61 761 53 HOH HOH . EA 6 HOH C 62 762 421 HOH HOH . EA 6 HOH C 63 763 429 HOH HOH . EA 6 HOH C 64 764 515 HOH HOH . EA 6 HOH C 65 765 541 HOH HOH . EA 6 HOH C 66 766 106 HOH HOH . EA 6 HOH C 67 767 257 HOH HOH . EA 6 HOH C 68 768 342 HOH HOH . EA 6 HOH C 69 769 494 HOH HOH . EA 6 HOH C 70 770 140 HOH HOH . EA 6 HOH C 71 771 313 HOH HOH . EA 6 HOH C 72 772 482 HOH HOH . EA 6 HOH C 73 773 380 HOH HOH . EA 6 HOH C 74 774 537 HOH HOH . EA 6 HOH C 75 775 473 HOH HOH . EA 6 HOH C 76 776 538 HOH HOH . EA 6 HOH C 77 777 540 HOH HOH . EA 6 HOH C 78 778 517 HOH HOH . EA 6 HOH C 79 779 542 HOH HOH . FA 6 HOH D 1 701 218 HOH HOH . FA 6 HOH D 2 702 516 HOH HOH . FA 6 HOH D 3 703 84 HOH HOH . FA 6 HOH D 4 704 543 HOH HOH . FA 6 HOH D 5 705 324 HOH HOH . FA 6 HOH D 6 706 339 HOH HOH . FA 6 HOH D 7 707 431 HOH HOH . FA 6 HOH D 8 708 86 HOH HOH . FA 6 HOH D 9 709 240 HOH HOH . FA 6 HOH D 10 710 12 HOH HOH . FA 6 HOH D 11 711 508 HOH HOH . FA 6 HOH D 12 712 117 HOH HOH . FA 6 HOH D 13 713 327 HOH HOH . FA 6 HOH D 14 714 351 HOH HOH . FA 6 HOH D 15 715 215 HOH HOH . FA 6 HOH D 16 716 212 HOH HOH . FA 6 HOH D 17 717 71 HOH HOH . FA 6 HOH D 18 718 262 HOH HOH . FA 6 HOH D 19 719 37 HOH HOH . FA 6 HOH D 20 720 108 HOH HOH . FA 6 HOH D 21 721 219 HOH HOH . FA 6 HOH D 22 722 48 HOH HOH . FA 6 HOH D 23 723 16 HOH HOH . FA 6 HOH D 24 724 32 HOH HOH . FA 6 HOH D 25 725 544 HOH HOH . FA 6 HOH D 26 726 63 HOH HOH . FA 6 HOH D 27 727 44 HOH HOH . FA 6 HOH D 28 728 546 HOH HOH . FA 6 HOH D 29 729 165 HOH HOH . FA 6 HOH D 30 730 20 HOH HOH . FA 6 HOH D 31 731 499 HOH HOH . FA 6 HOH D 32 732 323 HOH HOH . FA 6 HOH D 33 733 31 HOH HOH . FA 6 HOH D 34 734 129 HOH HOH . FA 6 HOH D 35 735 233 HOH HOH . FA 6 HOH D 36 736 169 HOH HOH . FA 6 HOH D 37 737 278 HOH HOH . FA 6 HOH D 38 738 59 HOH HOH . FA 6 HOH D 39 739 80 HOH HOH . FA 6 HOH D 40 740 259 HOH HOH . FA 6 HOH D 41 741 222 HOH HOH . FA 6 HOH D 42 742 47 HOH HOH . FA 6 HOH D 43 743 376 HOH HOH . FA 6 HOH D 44 744 436 HOH HOH . FA 6 HOH D 45 745 145 HOH HOH . FA 6 HOH D 46 746 170 HOH HOH . FA 6 HOH D 47 747 275 HOH HOH . FA 6 HOH D 48 748 156 HOH HOH . FA 6 HOH D 49 749 206 HOH HOH . FA 6 HOH D 50 750 26 HOH HOH . FA 6 HOH D 51 751 447 HOH HOH . FA 6 HOH D 52 752 435 HOH HOH . FA 6 HOH D 53 753 179 HOH HOH . FA 6 HOH D 54 754 95 HOH HOH . FA 6 HOH D 55 755 325 HOH HOH . FA 6 HOH D 56 756 192 HOH HOH . FA 6 HOH D 57 757 241 HOH HOH . FA 6 HOH D 58 758 143 HOH HOH . FA 6 HOH D 59 759 190 HOH HOH . FA 6 HOH D 60 760 370 HOH HOH . FA 6 HOH D 61 761 338 HOH HOH . FA 6 HOH D 62 762 506 HOH HOH . FA 6 HOH D 63 763 423 HOH HOH . FA 6 HOH D 64 764 509 HOH HOH . FA 6 HOH D 65 765 547 HOH HOH . FA 6 HOH D 66 766 331 HOH HOH . FA 6 HOH D 67 767 525 HOH HOH . FA 6 HOH D 68 768 467 HOH HOH . FA 6 HOH D 69 769 341 HOH HOH . FA 6 HOH D 70 770 554 HOH HOH . FA 6 HOH D 71 771 439 HOH HOH . FA 6 HOH D 72 772 302 HOH HOH . FA 6 HOH D 73 773 284 HOH HOH . FA 6 HOH D 74 774 490 HOH HOH . FA 6 HOH D 75 775 500 HOH HOH . FA 6 HOH D 76 776 545 HOH HOH . FA 6 HOH D 77 777 328 HOH HOH . FA 6 HOH D 78 778 303 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB GDP . . . R 3 37.055 -7.242 -128.655 1 68.55 ? PB GDP 602 C 1 HETATM 2 O O1B GDP . . . R 3 37.991 -7.066 -129.824 1 61.58 ? O1B GDP 602 C 1 HETATM 3 O O2B GDP . . . R 3 37.638 -7.965 -127.472 1 65.97 ? O2B GDP 602 C 1 HETATM 4 O O3B GDP . . . R 3 35.649 -7.612 -129.033 1 69.65 ? O3B GDP 602 C 1 HETATM 5 O O3A GDP . . . R 3 36.873 -5.768 -128.078 1 63.33 ? O3A GDP 602 C 1 HETATM 6 P PA GDP . . . R 3 35.494 -5.077 -127.669 1 62.13 ? PA GDP 602 C 1 HETATM 7 O O1A GDP . . . R 3 34.274 -5.975 -127.641 1 61.8 ? O1A GDP 602 C 1 HETATM 8 O O2A GDP . . . R 3 35.847 -4.292 -126.446 1 57.88 ? O2A GDP 602 C 1 HETATM 9 O O5' GDP . . . R 3 35.438 -4.062 -128.91 1 63.61 ? O5' GDP 602 C 1 HETATM 10 C C5' GDP . . . R 3 34.459 -4.042 -129.919 1 58.4 ? C5' GDP 602 C 1 HETATM 11 C C4' GDP . . . R 3 34.555 -2.695 -130.614 1 57.55 ? C4' GDP 602 C 1 HETATM 12 O O4' GDP . . . R 3 34.231 -1.638 -129.723 1 56.83 ? O4' GDP 602 C 1 HETATM 13 C C3' GDP . . . R 3 35.962 -2.428 -131.106 1 59.07 ? C3' GDP 602 C 1 HETATM 14 O O3' GDP . . . R 3 35.892 -1.859 -132.393 1 56.69 ? O3' GDP 602 C 1 HETATM 15 C C2' GDP . . . R 3 36.558 -1.435 -130.143 1 59.76 ? C2' GDP 602 C 1 HETATM 16 O O2' GDP . . . R 3 37.538 -0.619 -130.785 1 57.1 ? O2' GDP 602 C 1 HETATM 17 C C1' GDP . . . R 3 35.316 -0.712 -129.64 1 61.07 ? C1' GDP 602 C 1 HETATM 18 N N9 GDP . . . R 3 35.434 -0.27 -128.243 1 71.14 ? N9 GDP 602 C 1 HETATM 19 C C8 GDP . . . R 3 36.182 -0.835 -127.296 1 73.79 ? C8 GDP 602 C 1 HETATM 20 N N7 GDP . . . R 3 36.047 -0.173 -126.134 1 74.67 ? N7 GDP 602 C 1 HETATM 21 C C5 GDP . . . R 3 35.199 0.83 -126.324 1 77.11 ? C5 GDP 602 C 1 HETATM 22 C C6 GDP . . . R 3 34.626 1.923 -125.516 1 77.65 ? C6 GDP 602 C 1 HETATM 23 O O6 GDP . . . R 3 34.894 2.066 -124.327 1 76.35 ? O6 GDP 602 C 1 HETATM 24 N N1 GDP . . . R 3 33.792 2.761 -126.109 1 80.16 ? N1 GDP 602 C 1 HETATM 25 C C2 GDP . . . R 3 33.465 2.643 -127.401 1 77.68 ? C2 GDP 602 C 1 HETATM 26 N N2 GDP . . . R 3 32.609 3.526 -127.927 1 80.37 ? N2 GDP 602 C 1 HETATM 27 N N3 GDP . . . R 3 33.943 1.681 -128.198 1 73.91 ? N3 GDP 602 C 1 HETATM 28 C C4 GDP . . . R 3 34.8 0.766 -127.725 1 75.08 ? C4 GDP 602 C 1 HETATM 29 H H5' GDP . . . R 3 34.64 -4.848 -130.629 1 70.08 ? H5' GDP 602 C 1 HETATM 30 H "H5''" GDP . . . R 3 33.466 -4.174 -129.489 1 70.08 ? "H5''" GDP 602 C 1 HETATM 31 H H4' GDP . . . R 3 33.87 -2.686 -131.472 1 69.06 ? H4' GDP 602 C 1 HETATM 32 H H3' GDP . . . R 3 36.549 -3.355 -131.11 1 70.88 ? H3' GDP 602 C 1 HETATM 33 H H2' GDP . . . R 3 37.015 -1.979 -129.306 1 71.71 ? H2' GDP 602 C 1 HETATM 34 H HO2' GDP . . . R 3 38.205 -1.177 -131.204 1 68.52 ? HO2' GDP 602 C 1 HETATM 35 H H1' GDP . . . R 3 35.122 0.152 -130.288 1 73.28 ? H1' GDP 602 C 1 HETATM 36 H H8 GDP . . . R 3 36.804 -1.709 -127.44 1 88.54 ? H8 GDP 602 C 1 HETATM 37 H HN1 GDP . . . R 3 33.374 3.532 -125.551 1 96.19 ? HN1 GDP 602 C 1 HETATM 38 H HN21 GDP . . . R 3 32.227 4.263 -127.353 1 96.44 ? HN21 GDP 602 C 1 HETATM 39 H HN22 GDP . . . R 3 32.348 3.456 -128.9 1 96.44 ? HN22 GDP 602 C 1 # _model_server_stats.io_time_ms 33 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 28 _model_server_stats.query_time_ms 254 _model_server_stats.encode_time_ms 18 _model_server_stats.element_count 39 #