data_4Z88
#
_model_server_result.job_id            vmC9MfVy82yL35WPHMm9BQ 
_model_server_result.datetime_utc      '2025-09-06 23:16:21' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4z88 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"GA","auth_seq_id":1401}' 
#
_entry.id    4Z88 
#
_exptl.entry_id    4Z88 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              94.971 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PHOSPHATE ION' 
_entity.pdbx_number_of_molecules    11 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90.27 
_cell.angle_gamma         90 
_cell.entry_id            4Z88 
_cell.length_a            108.28 
_cell.length_b            62.42 
_cell.length_c            163.64 
_cell.Z_PDB               48 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4Z88 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? dimeric 2 author_defined_assembly 1 
? dimeric 2 author_defined_assembly 2 
? dimeric 2 author_defined_assembly 3 
? dimeric 2 author_defined_assembly 4 
? dimeric 2 author_defined_assembly 5 
? dimeric 2 author_defined_assembly 6 
? dimeric 2 author_defined_assembly 7 
? dimeric 2 author_defined_assembly 8 
? dimeric 2 author_defined_assembly 9 
? dimeric 2 author_defined_assembly 10 
? dimeric 2 author_defined_assembly 11 
? dimeric 2 author_defined_assembly 12 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,M,Y,JA,VA 1 1 
B,N,Z,KA 2 1 
C,O,AA,LA,WA 3 1 
D,P,MA 4 1 
E,Q,BA,NA,XA 5 1 
F,R,CA,OA 6 1 
G,S,DA,PA 7 1 
H,T,EA,QA 8 1 
I,U,FA,RA 9 1 
J,V,GA,SA 10 1 
K,W,HA,TA,YA 11 1 
L,X,IA,UA,ZA 12 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 Y N N 
? 3 Z N N 
? 3 AA N N 
? 3 BA N N 
? 3 CA N N 
? 3 DA N N 
? 3 EA N N 
? 3 FA N N 
? 3 GA N N 
? 3 HA N N 
? 3 IA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 29 A CYS 1338 1_555 B SG CYS 29 B CYS 1338 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? 
disulf ? disulf2 C SG CYS 29 C CYS 1338 1_555 D SG CYS 29 D CYS 1338 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf3 E SG CYS 29 E CYS 1338 1_555 F SG CYS 29 F CYS 1338 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? 
disulf ? disulf4 G SG CYS 29 G CYS 1338 1_555 H SG CYS 29 H CYS 1338 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.003 ? 
disulf ? disulf5 I SG CYS 29 I CYS 1338 1_555 J SG CYS 29 J CYS 1338 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? 
disulf ? disulf6 K SG CYS 29 K CYS 1338 1_555 L SG CYS 29 L CYS 1338 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? 
covale ? covale1 M C LYS 16 M LYS 163 1_555 M N NH2 17 M NH2 164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? 
covale ? covale2 O C LYS 16 O LYS 163 1_555 O N NH2 17 O NH2 164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? 
covale ? covale3 Q C LYS 16 Q LYS 163 1_555 Q N NH2 17 Q NH2 164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale4 S C LYS 16 S LYS 163 1_555 S N NH2 17 S NH2 164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale5 U C LYS 16 U LYS 163 1_555 U N NH2 17 U NH2 164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale6 W C LYS 16 W LYS 163 1_555 W N NH2 17 W NH2 164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
#
_chem_comp.formula           'O4 P -3' 
_chem_comp.formula_weight    94.971 
_chem_comp.id                PO4 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PHOSPHATE ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
P O1 PO4 doub 268 n n 
P O2 PO4 sing 269 n n 
P O3 PO4 sing 270 n n 
P O4 PO4 sing 271 n n 
#
_atom_sites.entry_id                     4Z88 
_atom_sites.fract_transf_matrix[1][1]    0.009235 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000044 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016021 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006111 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
Y 3 PO4 A 1 1401 1 PO4 PO4 . 
Z 3 PO4 B 1 1401 2 PO4 PO4 . 
AA 3 PO4 C 1 1401 3 PO4 PO4 . 
BA 3 PO4 E 1 1401 4 PO4 PO4 . 
CA 3 PO4 F 1 1401 5 PO4 PO4 . 
DA 3 PO4 G 1 1401 6 PO4 PO4 . 
EA 3 PO4 H 1 1401 7 PO4 PO4 . 
FA 3 PO4 I 1 1401 8 PO4 PO4 . 
GA 3 PO4 J 1 1401 9 PO4 PO4 . 
HA 3 PO4 K 1 1401 10 PO4 PO4 . 
IA 3 PO4 L 1 1401 11 PO4 PO4 . 
JA 4 HOH A 1 1501 19 HOH HOH . 
JA 4 HOH A 2 1502 27 HOH HOH . 
JA 4 HOH A 3 1503 26 HOH HOH . 
JA 4 HOH A 4 1504 15 HOH HOH . 
JA 4 HOH A 5 1505 9 HOH HOH . 
KA 4 HOH B 1 1501 11 HOH HOH . 
KA 4 HOH B 2 1502 57 HOH HOH . 
KA 4 HOH B 3 1503 10 HOH HOH . 
KA 4 HOH B 4 1504 56 HOH HOH . 
KA 4 HOH B 5 1505 23 HOH HOH . 
LA 4 HOH C 1 1501 16 HOH HOH . 
LA 4 HOH C 2 1502 13 HOH HOH . 
LA 4 HOH C 3 1503 22 HOH HOH . 
MA 4 HOH D 1 1401 17 HOH HOH . 
MA 4 HOH D 2 1402 1 HOH HOH . 
MA 4 HOH D 3 1403 12 HOH HOH . 
NA 4 HOH E 1 1501 20 HOH HOH . 
NA 4 HOH E 2 1502 32 HOH HOH . 
NA 4 HOH E 3 1503 55 HOH HOH . 
NA 4 HOH E 4 1504 4 HOH HOH . 
NA 4 HOH E 5 1505 29 HOH HOH . 
OA 4 HOH F 1 1501 5 HOH HOH . 
OA 4 HOH F 2 1502 33 HOH HOH . 
OA 4 HOH F 3 1503 6 HOH HOH . 
OA 4 HOH F 4 1504 43 HOH HOH . 
OA 4 HOH F 5 1505 25 HOH HOH . 
OA 4 HOH F 6 1506 30 HOH HOH . 
PA 4 HOH G 1 1501 35 HOH HOH . 
PA 4 HOH G 2 1502 8 HOH HOH . 
PA 4 HOH G 3 1503 34 HOH HOH . 
QA 4 HOH H 1 1501 3 HOH HOH . 
QA 4 HOH H 2 1502 28 HOH HOH . 
RA 4 HOH I 1 1501 36 HOH HOH . 
RA 4 HOH I 2 1502 38 HOH HOH . 
RA 4 HOH I 3 1503 37 HOH HOH . 
RA 4 HOH I 4 1504 21 HOH HOH . 
RA 4 HOH I 5 1505 49 HOH HOH . 
SA 4 HOH J 1 1501 40 HOH HOH . 
SA 4 HOH J 2 1502 39 HOH HOH . 
SA 4 HOH J 3 1503 41 HOH HOH . 
SA 4 HOH J 4 1504 18 HOH HOH . 
TA 4 HOH K 1 1501 45 HOH HOH . 
TA 4 HOH K 2 1502 14 HOH HOH . 
TA 4 HOH K 3 1503 42 HOH HOH . 
TA 4 HOH K 4 1504 7 HOH HOH . 
UA 4 HOH L 1 1501 44 HOH HOH . 
VA 4 HOH M 1 201 46 HOH HOH . 
VA 4 HOH M 2 202 47 HOH HOH . 
WA 4 HOH O 1 201 50 HOH HOH . 
XA 4 HOH Q 1 201 2 HOH HOH . 
XA 4 HOH Q 2 202 51 HOH HOH . 
XA 4 HOH Q 3 203 52 HOH HOH . 
XA 4 HOH Q 4 204 54 HOH HOH . 
XA 4 HOH Q 5 205 53 HOH HOH . 
YA 4 HOH W 1 201 48 HOH HOH . 
ZA 4 HOH X 1 201 31 HOH HOH . 
ZA 4 HOH X 2 202 24 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P P PO4 . . . GA 3 26.001 21.635 -80.946 1 45.85 ? P PO4 1401 J 1 
HETATM 2 O O1 PO4 . . . GA 3 26.057 22.377 -82.267 1 43.3 ? O1 PO4 1401 J 1 
HETATM 3 O O2 PO4 . . . GA 3 27.416 21.525 -80.409 1 45.67 ? O2 PO4 1401 J 1 
HETATM 4 O O3 PO4 . . . GA 3 25.395 20.27 -81.149 1 44.64 ? O3 PO4 1401 J 1 
HETATM 5 O O4 PO4 . . . GA 3 25.147 22.37 -79.946 1 44.47 ? O4 PO4 1401 J 1 
#
_model_server_stats.io_time_ms              25 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    19 
_model_server_stats.query_time_ms           332 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           5 
#