data_4Z89
#
_model_server_result.job_id            knIGXxJP6CcsFPP4cGtpmA 
_model_server_result.datetime_utc      '2025-09-07 12:25:58' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4z89 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"U","auth_seq_id":1401}' 
#
_entry.id    4Z89 
#
_exptl.entry_id    4Z89 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              40.078 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'CALCIUM ION' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          113.17 
_cell.angle_gamma         90 
_cell.entry_id            4Z89 
_cell.length_a            58.3 
_cell.length_b            122.22 
_cell.length_c            68.54 
_cell.Z_PDB               20 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4Z89 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? dimeric 2 author_defined_assembly 1 
? dimeric 2 author_defined_assembly 2 
? dimeric 2 author_defined_assembly 3 
? dimeric 2 author_defined_assembly 4 
? dimeric 2 author_defined_assembly 5 
? dimeric 2 author_defined_assembly 6 
? dimeric 2 author_defined_assembly 7 
? dimeric 2 author_defined_assembly 8 
? dimeric 2 author_defined_assembly 9 
? dimeric 2 author_defined_assembly 10 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,K,V,FA 1 1 
B,L,U,W,GA 2 1 
C,M,X,HA 3 1 
D,N,Y,IA 4 1 
E,O,Z,JA 5 1 
F,P,AA,KA 6 1 
G,Q,BA,LA 7 1 
H,R,CA 8 1 
I,S,DA 9 1 
J,T,EA,MA 10 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             U 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 29 A CYS 1338 1_555 B SG CYS 29 B CYS 1338 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? 
disulf ? disulf2 C SG CYS 29 C CYS 1338 1_555 F SG CYS 29 F CYS 1338 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? 
disulf ? disulf3 D SG CYS 29 D CYS 1338 1_555 E SG CYS 29 E CYS 1338 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf4 G SG CYS 29 G CYS 1338 1_555 J SG CYS 29 J CYS 1338 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? 
disulf ? disulf5 H SG CYS 29 H CYS 1338 1_555 I SG CYS 29 I CYS 1338 1_655 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
covale ? covale1 O C ACE 1 e ACE 1684 1_555 O N ILE 2 e ILE 1685 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale2 P C ACE 1 f ACE 1684 1_555 P N ILE 2 f ILE 1685 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? 
metalc ? metalc1 V O HOH . A HOH 1405 1_555 U CA CA . B CA 1401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.463 ? 
metalc ? metalc2 B OD1 ASP 30 B ASP 1339 1_555 U CA CA . B CA 1401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.392 ? 
metalc ? metalc3 U CA CA . B CA 1401 1_555 X O HOH . C HOH 1405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.466 ? 
#
_chem_comp.formula           'Ca 2' 
_chem_comp.formula_weight    40.078 
_chem_comp.id                CA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'CALCIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     4Z89 
_atom_sites.fract_transf_matrix[1][1]    0.017153 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.007341 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008182 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.01587 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
U 3 CA B 1 1401 1 CA CA . 
V 4 HOH A 1 1401 24 HOH HOH . 
V 4 HOH A 2 1402 106 HOH HOH . 
V 4 HOH A 3 1403 47 HOH HOH . 
V 4 HOH A 4 1404 94 HOH HOH . 
V 4 HOH A 5 1405 89 HOH HOH . 
V 4 HOH A 6 1406 87 HOH HOH . 
V 4 HOH A 7 1407 44 HOH HOH . 
V 4 HOH A 8 1408 20 HOH HOH . 
V 4 HOH A 9 1409 40 HOH HOH . 
V 4 HOH A 10 1410 127 HOH HOH . 
V 4 HOH A 11 1411 77 HOH HOH . 
V 4 HOH A 12 1412 4 HOH HOH . 
V 4 HOH A 13 1413 36 HOH HOH . 
V 4 HOH A 14 1414 116 HOH HOH . 
V 4 HOH A 15 1415 129 HOH HOH . 
V 4 HOH A 16 1416 14 HOH HOH . 
W 4 HOH B 1 1501 43 HOH HOH . 
W 4 HOH B 2 1502 19 HOH HOH . 
W 4 HOH B 3 1503 3 HOH HOH . 
W 4 HOH B 4 1504 64 HOH HOH . 
W 4 HOH B 5 1505 5 HOH HOH . 
W 4 HOH B 6 1506 17 HOH HOH . 
W 4 HOH B 7 1507 90 HOH HOH . 
W 4 HOH B 8 1508 23 HOH HOH . 
W 4 HOH B 9 1509 61 HOH HOH . 
W 4 HOH B 10 1510 63 HOH HOH . 
W 4 HOH B 11 1511 55 HOH HOH . 
W 4 HOH B 12 1512 16 HOH HOH . 
W 4 HOH B 13 1513 136 HOH HOH . 
W 4 HOH B 14 1514 88 HOH HOH . 
W 4 HOH B 15 1515 135 HOH HOH . 
W 4 HOH B 16 1516 21 HOH HOH . 
W 4 HOH B 17 1517 131 HOH HOH . 
W 4 HOH B 18 1518 79 HOH HOH . 
W 4 HOH B 19 1519 102 HOH HOH . 
X 4 HOH C 1 1401 2 HOH HOH . 
X 4 HOH C 2 1402 130 HOH HOH . 
X 4 HOH C 3 1403 18 HOH HOH . 
X 4 HOH C 4 1404 113 HOH HOH . 
X 4 HOH C 5 1405 70 HOH HOH . 
X 4 HOH C 6 1406 124 HOH HOH . 
X 4 HOH C 7 1407 114 HOH HOH . 
X 4 HOH C 8 1408 140 HOH HOH . 
X 4 HOH C 9 1409 57 HOH HOH . 
Y 4 HOH D 1 1401 126 HOH HOH . 
Y 4 HOH D 2 1402 119 HOH HOH . 
Y 4 HOH D 3 1403 46 HOH HOH . 
Y 4 HOH D 4 1404 35 HOH HOH . 
Y 4 HOH D 5 1405 62 HOH HOH . 
Y 4 HOH D 6 1406 133 HOH HOH . 
Y 4 HOH D 7 1407 28 HOH HOH . 
Y 4 HOH D 8 1408 122 HOH HOH . 
Y 4 HOH D 9 1409 142 HOH HOH . 
Y 4 HOH D 10 1410 117 HOH HOH . 
Z 4 HOH E 1 1401 13 HOH HOH . 
Z 4 HOH E 2 1402 51 HOH HOH . 
Z 4 HOH E 3 1403 32 HOH HOH . 
Z 4 HOH E 4 1404 91 HOH HOH . 
Z 4 HOH E 5 1405 134 HOH HOH . 
Z 4 HOH E 6 1406 60 HOH HOH . 
Z 4 HOH E 7 1407 33 HOH HOH . 
Z 4 HOH E 8 1408 105 HOH HOH . 
Z 4 HOH E 9 1409 84 HOH HOH . 
Z 4 HOH E 10 1410 58 HOH HOH . 
Z 4 HOH E 11 1411 53 HOH HOH . 
Z 4 HOH E 12 1412 12 HOH HOH . 
Z 4 HOH E 13 1413 95 HOH HOH . 
Z 4 HOH E 14 1414 82 HOH HOH . 
AA 4 HOH F 1 1401 45 HOH HOH . 
AA 4 HOH F 2 1402 139 HOH HOH . 
AA 4 HOH F 3 1403 121 HOH HOH . 
AA 4 HOH F 4 1404 31 HOH HOH . 
AA 4 HOH F 5 1405 9 HOH HOH . 
AA 4 HOH F 6 1406 26 HOH HOH . 
AA 4 HOH F 7 1407 112 HOH HOH . 
AA 4 HOH F 8 1408 22 HOH HOH . 
AA 4 HOH F 9 1409 66 HOH HOH . 
AA 4 HOH F 10 1410 143 HOH HOH . 
AA 4 HOH F 11 1411 108 HOH HOH . 
AA 4 HOH F 12 1412 68 HOH HOH . 
AA 4 HOH F 13 1413 138 HOH HOH . 
AA 4 HOH F 14 1414 137 HOH HOH . 
AA 4 HOH F 15 1415 76 HOH HOH . 
AA 4 HOH F 16 1416 92 HOH HOH . 
BA 4 HOH G 1 1401 107 HOH HOH . 
BA 4 HOH G 2 1402 39 HOH HOH . 
BA 4 HOH G 3 1403 30 HOH HOH . 
BA 4 HOH G 4 1404 38 HOH HOH . 
BA 4 HOH G 5 1405 1 HOH HOH . 
BA 4 HOH G 6 1406 7 HOH HOH . 
BA 4 HOH G 7 1407 65 HOH HOH . 
BA 4 HOH G 8 1408 118 HOH HOH . 
BA 4 HOH G 9 1409 110 HOH HOH . 
BA 4 HOH G 10 1410 54 HOH HOH . 
CA 4 HOH H 1 1401 6 HOH HOH . 
CA 4 HOH H 2 1402 104 HOH HOH . 
CA 4 HOH H 3 1403 8 HOH HOH . 
DA 4 HOH I 1 1401 49 HOH HOH . 
DA 4 HOH I 2 1402 100 HOH HOH . 
DA 4 HOH I 3 1403 72 HOH HOH . 
DA 4 HOH I 4 1404 48 HOH HOH . 
DA 4 HOH I 5 1405 98 HOH HOH . 
DA 4 HOH I 6 1406 71 HOH HOH . 
EA 4 HOH J 1 1401 75 HOH HOH . 
EA 4 HOH J 2 1402 109 HOH HOH . 
EA 4 HOH J 3 1403 59 HOH HOH . 
EA 4 HOH J 4 1404 123 HOH HOH . 
EA 4 HOH J 5 1405 56 HOH HOH . 
EA 4 HOH J 6 1406 93 HOH HOH . 
EA 4 HOH J 7 1407 25 HOH HOH . 
EA 4 HOH J 8 1408 10 HOH HOH . 
EA 4 HOH J 9 1409 42 HOH HOH . 
EA 4 HOH J 10 1410 96 HOH HOH . 
EA 4 HOH J 11 1411 132 HOH HOH . 
EA 4 HOH J 12 1412 99 HOH HOH . 
EA 4 HOH J 13 1413 146 HOH HOH . 
EA 4 HOH J 14 1414 101 HOH HOH . 
FA 4 HOH a 1 1801 120 HOH HOH . 
FA 4 HOH a 2 1802 144 HOH HOH . 
FA 4 HOH a 3 1803 141 HOH HOH . 
GA 4 HOH b 1 1801 50 HOH HOH . 
HA 4 HOH c 1 1801 115 HOH HOH . 
IA 4 HOH d 1 1801 147 HOH HOH . 
JA 4 HOH e 1 1801 27 HOH HOH . 
JA 4 HOH e 2 1802 67 HOH HOH . 
JA 4 HOH e 3 1803 15 HOH HOH . 
JA 4 HOH e 4 1804 86 HOH HOH . 
KA 4 HOH f 1 1801 80 HOH HOH . 
KA 4 HOH f 2 1802 74 HOH HOH . 
KA 4 HOH f 3 1803 78 HOH HOH . 
LA 4 HOH g 1 1801 34 HOH HOH . 
MA 4 HOH j 1 1801 85 HOH HOH . 
MA 4 HOH j 2 1802 29 HOH HOH . 
MA 4 HOH j 3 1803 81 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           CA 
_atom_site.label_atom_id         CA 
_atom_site.label_comp_id         CA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         U 
_atom_site.label_entity_id       3 
_atom_site.Cartn_x               -12.982 
_atom_site.Cartn_y               11.733 
_atom_site.Cartn_z               -6.244 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        46.27 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          CA 
_atom_site.auth_comp_id          CA 
_atom_site.auth_seq_id           1401 
_atom_site.auth_asym_id          B 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              68 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           242 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           1 
#