data_4Z8G
#
_model_server_result.job_id            3XGAiRskoVApZseVWIeu_Q 
_model_server_result.datetime_utc      '2024-11-04 20:37:19' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4z8g 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":501}' 
#
_entry.id    4Z8G 
#
_exptl.entry_id    4Z8G 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              58.693 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NICKEL (II) ION' 
_entity.pdbx_number_of_molecules    9 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4Z8G 
_cell.length_a            53.468 
_cell.length_b            53.936 
_cell.length_c            75.604 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4Z8G 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 B N N 
? 2 C N N 
? 2 D N N 
? 2 E N N 
? 2 F N N 
? 2 G N N 
? 2 H N N 
? 2 I N N 
? 2 J N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD2 ASP 22 A ASP 182 1_555 E NI NI . A NI 504 4_465 ? ? ? ? ? ? ? ? ? ? ? ? 1.996 ? 
metalc ? metalc2 A OE1 GLU 25 A GLU 185 1_555 C NI NI . A NI 502 4_465 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
metalc ? metalc3 A OE1 GLU 28 A GLU 188 1_555 C NI NI . A NI 502 4_465 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? 
metalc ? metalc4 A OD2 ASP 77 A ASP 372 1_555 D NI NI . A NI 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.55 ? 
metalc ? metalc5 A ND1 HIS 79 A HIS 374 1_555 D NI NI . A NI 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.794 ? 
metalc ? metalc6 A NE2 HIS 79 A HIS 374 1_555 E NI NI . A NI 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.454 ? 
metalc ? metalc7 A ND1 HIS 103 A HIS 398 1_555 C NI NI . A NI 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.013 ? 
metalc ? metalc8 A ND1 HIS 128 A HIS 423 1_555 B NI NI . A NI 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.993 ? 
metalc ? metalc9 A NE2 HIS 132 A HIS 427 1_555 C NI NI . A NI 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.936 ? 
metalc ? metalc10 A ND1 HIS 158 A HIS 453 1_555 B NI NI . A NI 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? 
metalc ? metalc11 A OD1 ASP 177 A ASP 472 1_555 B NI NI . A NI 501 3_544 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? 
metalc ? metalc12 D NI NI . A NI 503 1_555 K O HOH . A HOH 697 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.542 ? 
metalc ? metalc13 E NI NI . A NI 504 1_555 K O HOH . A HOH 608 4_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? 
metalc ? metalc14 G NI NI . A NI 506 1_555 K O HOH . A HOH 692 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.11 ? 
metalc ? metalc15 I NI NI . A NI 508 1_555 K O HOH . A HOH 681 4_565 ? ? ? ? ? ? ? ? ? ? ? ? 2.668 ? 
#
_chem_comp.formula           'Ni 2' 
_chem_comp.formula_weight    58.693 
_chem_comp.id                NI 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NICKEL (II) ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     4Z8G 
_atom_sites.fract_transf_matrix[1][1]    0.018703 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01854 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.013227 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 NI A 1 501 501 NI NI . 
C 2 NI A 1 502 502 NI NI . 
D 2 NI A 1 503 503 NI NI . 
E 2 NI A 1 504 504 NI NI . 
F 2 NI A 1 505 505 NI NI . 
G 2 NI A 1 506 506 NI NI . 
H 2 NI A 1 507 507 NI NI . 
I 2 NI A 1 508 508 NI NI . 
J 2 NI A 1 509 509 NI NI . 
K 3 HOH A 1 601 92 HOH HOH . 
K 3 HOH A 2 602 2 HOH HOH . 
K 3 HOH A 3 603 96 HOH HOH . 
K 3 HOH A 4 604 109 HOH HOH . 
K 3 HOH A 5 605 87 HOH HOH . 
K 3 HOH A 6 606 91 HOH HOH . 
K 3 HOH A 7 607 63 HOH HOH . 
K 3 HOH A 8 608 64 HOH HOH . 
K 3 HOH A 9 609 94 HOH HOH . 
K 3 HOH A 10 610 28 HOH HOH . 
K 3 HOH A 11 611 17 HOH HOH . 
K 3 HOH A 12 612 39 HOH HOH . 
K 3 HOH A 13 613 13 HOH HOH . 
K 3 HOH A 14 614 98 HOH HOH . 
K 3 HOH A 15 615 53 HOH HOH . 
K 3 HOH A 16 616 8 HOH HOH . 
K 3 HOH A 17 617 51 HOH HOH . 
K 3 HOH A 18 618 14 HOH HOH . 
K 3 HOH A 19 619 33 HOH HOH . 
K 3 HOH A 20 620 19 HOH HOH . 
K 3 HOH A 21 621 68 HOH HOH . 
K 3 HOH A 22 622 112 HOH HOH . 
K 3 HOH A 23 623 105 HOH HOH . 
K 3 HOH A 24 624 7 HOH HOH . 
K 3 HOH A 25 625 75 HOH HOH . 
K 3 HOH A 26 626 89 HOH HOH . 
K 3 HOH A 27 627 30 HOH HOH . 
K 3 HOH A 28 628 49 HOH HOH . 
K 3 HOH A 29 629 86 HOH HOH . 
K 3 HOH A 30 630 31 HOH HOH . 
K 3 HOH A 31 631 10 HOH HOH . 
K 3 HOH A 32 632 29 HOH HOH . 
K 3 HOH A 33 633 16 HOH HOH . 
K 3 HOH A 34 634 3 HOH HOH . 
K 3 HOH A 35 635 79 HOH HOH . 
K 3 HOH A 36 636 46 HOH HOH . 
K 3 HOH A 37 637 35 HOH HOH . 
K 3 HOH A 38 638 22 HOH HOH . 
K 3 HOH A 39 639 110 HOH HOH . 
K 3 HOH A 40 640 36 HOH HOH . 
K 3 HOH A 41 641 59 HOH HOH . 
K 3 HOH A 42 642 15 HOH HOH . 
K 3 HOH A 43 643 21 HOH HOH . 
K 3 HOH A 44 644 69 HOH HOH . 
K 3 HOH A 45 645 11 HOH HOH . 
K 3 HOH A 46 646 9 HOH HOH . 
K 3 HOH A 47 647 23 HOH HOH . 
K 3 HOH A 48 648 73 HOH HOH . 
K 3 HOH A 49 649 40 HOH HOH . 
K 3 HOH A 50 650 57 HOH HOH . 
K 3 HOH A 51 651 97 HOH HOH . 
K 3 HOH A 52 652 1 HOH HOH . 
K 3 HOH A 53 653 18 HOH HOH . 
K 3 HOH A 54 654 100 HOH HOH . 
K 3 HOH A 55 655 6 HOH HOH . 
K 3 HOH A 56 656 74 HOH HOH . 
K 3 HOH A 57 657 24 HOH HOH . 
K 3 HOH A 58 658 20 HOH HOH . 
K 3 HOH A 59 659 102 HOH HOH . 
K 3 HOH A 60 660 25 HOH HOH . 
K 3 HOH A 61 661 5 HOH HOH . 
K 3 HOH A 62 662 44 HOH HOH . 
K 3 HOH A 63 663 12 HOH HOH . 
K 3 HOH A 64 664 95 HOH HOH . 
K 3 HOH A 65 665 54 HOH HOH . 
K 3 HOH A 66 666 32 HOH HOH . 
K 3 HOH A 67 667 85 HOH HOH . 
K 3 HOH A 68 668 61 HOH HOH . 
K 3 HOH A 69 669 72 HOH HOH . 
K 3 HOH A 70 670 37 HOH HOH . 
K 3 HOH A 71 671 80 HOH HOH . 
K 3 HOH A 72 672 52 HOH HOH . 
K 3 HOH A 73 673 67 HOH HOH . 
K 3 HOH A 74 674 60 HOH HOH . 
K 3 HOH A 75 675 27 HOH HOH . 
K 3 HOH A 76 676 38 HOH HOH . 
K 3 HOH A 77 677 4 HOH HOH . 
K 3 HOH A 78 678 58 HOH HOH . 
K 3 HOH A 79 679 104 HOH HOH . 
K 3 HOH A 80 680 45 HOH HOH . 
K 3 HOH A 81 681 71 HOH HOH . 
K 3 HOH A 82 682 62 HOH HOH . 
K 3 HOH A 83 683 81 HOH HOH . 
K 3 HOH A 84 684 77 HOH HOH . 
K 3 HOH A 85 685 84 HOH HOH . 
K 3 HOH A 86 686 108 HOH HOH . 
K 3 HOH A 87 687 48 HOH HOH . 
K 3 HOH A 88 688 93 HOH HOH . 
K 3 HOH A 89 689 47 HOH HOH . 
K 3 HOH A 90 690 76 HOH HOH . 
K 3 HOH A 91 691 43 HOH HOH . 
K 3 HOH A 92 692 88 HOH HOH . 
K 3 HOH A 93 693 106 HOH HOH . 
K 3 HOH A 94 694 103 HOH HOH . 
K 3 HOH A 95 695 82 HOH HOH . 
K 3 HOH A 96 696 55 HOH HOH . 
K 3 HOH A 97 697 90 HOH HOH . 
K 3 HOH A 98 698 83 HOH HOH . 
K 3 HOH A 99 699 111 HOH HOH . 
K 3 HOH A 100 700 101 HOH HOH . 
K 3 HOH A 101 701 78 HOH HOH . 
K 3 HOH A 102 702 41 HOH HOH . 
K 3 HOH A 103 703 107 HOH HOH . 
K 3 HOH A 104 704 42 HOH HOH . 
K 3 HOH A 105 705 66 HOH HOH . 
K 3 HOH A 106 706 34 HOH HOH . 
K 3 HOH A 107 707 65 HOH HOH . 
K 3 HOH A 108 708 26 HOH HOH . 
K 3 HOH A 109 709 99 HOH HOH . 
K 3 HOH A 110 710 70 HOH HOH . 
K 3 HOH A 111 711 56 HOH HOH . 
K 3 HOH A 112 712 113 HOH HOH . 
K 3 HOH A 113 713 50 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           NI 
_atom_site.label_atom_id         NI 
_atom_site.label_comp_id         NI 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         B 
_atom_site.label_entity_id       2 
_atom_site.Cartn_x               4.186 
_atom_site.Cartn_y               28.714 
_atom_site.Cartn_z               -19.133 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        17.23 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          NI 
_atom_site.auth_comp_id          NI 
_atom_site.auth_seq_id           501 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           261 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           1 
#