data_4Z93
#
_model_server_result.job_id            nJv6iI4MRVllLT542o58Fw 
_model_server_result.datetime_utc      '2024-11-24 19:06:51' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4z93 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":502}' 
#
_entry.id    4Z93 
#
_exptl.entry_id    4Z93 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4Z93 
_cell.length_a            51.862 
_cell.length_b            72.696 
_cell.length_c            32.115 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4Z93 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C LYS 7 A LYS 355 1_555 A N CME 8 A CME 356 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.355 ? 
covale ? covale2 A C CME 8 A CME 356 1_555 A N CYS 9 A CYS 357 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.348 ? 
covale ? covale3 A C TYR 42 A TYR 390 1_555 A N CME 43 A CME 391 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.314 ? 
covale ? covale4 A C CME 43 A CME 391 1_555 A N ASP 44 A ASP 392 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 163 n n 
C1 C2 EDO sing 164 n n 
C1 H11 EDO sing 165 n n 
C1 H12 EDO sing 166 n n 
O1 HO1 EDO sing 167 n n 
C2 O2 EDO sing 168 n n 
C2 H21 EDO sing 169 n n 
C2 H22 EDO sing 170 n n 
O2 HO2 EDO sing 171 n n 
#
_atom_sites.entry_id                     4Z93 
_atom_sites.fract_transf_matrix[1][1]    0.019282 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013756 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.031138 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 4LD A 1 501 1 4LD R37 . 
C 3 EDO A 1 502 1 EDO EDO . 
D 4 HOH A 1 601 116 HOH HOH . 
D 4 HOH A 2 602 73 HOH HOH . 
D 4 HOH A 3 603 112 HOH HOH . 
D 4 HOH A 4 604 3 HOH HOH . 
D 4 HOH A 5 605 96 HOH HOH . 
D 4 HOH A 6 606 118 HOH HOH . 
D 4 HOH A 7 607 27 HOH HOH . 
D 4 HOH A 8 608 4 HOH HOH . 
D 4 HOH A 9 609 18 HOH HOH . 
D 4 HOH A 10 610 1 HOH HOH . 
D 4 HOH A 11 611 49 HOH HOH . 
D 4 HOH A 12 612 35 HOH HOH . 
D 4 HOH A 13 613 59 HOH HOH . 
D 4 HOH A 14 614 95 HOH HOH . 
D 4 HOH A 15 615 57 HOH HOH . 
D 4 HOH A 16 616 24 HOH HOH . 
D 4 HOH A 17 617 88 HOH HOH . 
D 4 HOH A 18 618 10 HOH HOH . 
D 4 HOH A 19 619 46 HOH HOH . 
D 4 HOH A 20 620 37 HOH HOH . 
D 4 HOH A 21 621 29 HOH HOH . 
D 4 HOH A 22 622 104 HOH HOH . 
D 4 HOH A 23 623 113 HOH HOH . 
D 4 HOH A 24 624 34 HOH HOH . 
D 4 HOH A 25 625 103 HOH HOH . 
D 4 HOH A 26 626 16 HOH HOH . 
D 4 HOH A 27 627 20 HOH HOH . 
D 4 HOH A 28 628 67 HOH HOH . 
D 4 HOH A 29 629 106 HOH HOH . 
D 4 HOH A 30 630 41 HOH HOH . 
D 4 HOH A 31 631 44 HOH HOH . 
D 4 HOH A 32 632 11 HOH HOH . 
D 4 HOH A 33 633 76 HOH HOH . 
D 4 HOH A 34 634 13 HOH HOH . 
D 4 HOH A 35 635 2 HOH HOH . 
D 4 HOH A 36 636 79 HOH HOH . 
D 4 HOH A 37 637 19 HOH HOH . 
D 4 HOH A 38 638 15 HOH HOH . 
D 4 HOH A 39 639 64 HOH HOH . 
D 4 HOH A 40 640 99 HOH HOH . 
D 4 HOH A 41 641 48 HOH HOH . 
D 4 HOH A 42 642 42 HOH HOH . 
D 4 HOH A 43 643 107 HOH HOH . 
D 4 HOH A 44 644 28 HOH HOH . 
D 4 HOH A 45 645 77 HOH HOH . 
D 4 HOH A 46 646 23 HOH HOH . 
D 4 HOH A 47 647 5 HOH HOH . 
D 4 HOH A 48 648 36 HOH HOH . 
D 4 HOH A 49 649 47 HOH HOH . 
D 4 HOH A 50 650 9 HOH HOH . 
D 4 HOH A 51 651 32 HOH HOH . 
D 4 HOH A 52 652 111 HOH HOH . 
D 4 HOH A 53 653 38 HOH HOH . 
D 4 HOH A 54 654 6 HOH HOH . 
D 4 HOH A 55 655 12 HOH HOH . 
D 4 HOH A 56 656 58 HOH HOH . 
D 4 HOH A 57 657 7 HOH HOH . 
D 4 HOH A 58 658 74 HOH HOH . 
D 4 HOH A 59 659 30 HOH HOH . 
D 4 HOH A 60 660 33 HOH HOH . 
D 4 HOH A 61 661 72 HOH HOH . 
D 4 HOH A 62 662 80 HOH HOH . 
D 4 HOH A 63 663 83 HOH HOH . 
D 4 HOH A 64 664 81 HOH HOH . 
D 4 HOH A 65 665 39 HOH HOH . 
D 4 HOH A 66 666 21 HOH HOH . 
D 4 HOH A 67 667 51 HOH HOH . 
D 4 HOH A 68 668 109 HOH HOH . 
D 4 HOH A 69 669 22 HOH HOH . 
D 4 HOH A 70 670 60 HOH HOH . 
D 4 HOH A 71 671 68 HOH HOH . 
D 4 HOH A 72 672 43 HOH HOH . 
D 4 HOH A 73 673 98 HOH HOH . 
D 4 HOH A 74 674 8 HOH HOH . 
D 4 HOH A 75 675 54 HOH HOH . 
D 4 HOH A 76 676 25 HOH HOH . 
D 4 HOH A 77 677 17 HOH HOH . 
D 4 HOH A 78 678 117 HOH HOH . 
D 4 HOH A 79 679 14 HOH HOH . 
D 4 HOH A 80 680 84 HOH HOH . 
D 4 HOH A 81 681 105 HOH HOH . 
D 4 HOH A 82 682 26 HOH HOH . 
D 4 HOH A 83 683 45 HOH HOH . 
D 4 HOH A 84 684 97 HOH HOH . 
D 4 HOH A 85 685 92 HOH HOH . 
D 4 HOH A 86 686 31 HOH HOH . 
D 4 HOH A 87 687 63 HOH HOH . 
D 4 HOH A 88 688 55 HOH HOH . 
D 4 HOH A 89 689 53 HOH HOH . 
D 4 HOH A 90 690 108 HOH HOH . 
D 4 HOH A 91 691 56 HOH HOH . 
D 4 HOH A 92 692 52 HOH HOH . 
D 4 HOH A 93 693 100 HOH HOH . 
D 4 HOH A 94 694 89 HOH HOH . 
D 4 HOH A 95 695 65 HOH HOH . 
D 4 HOH A 96 696 62 HOH HOH . 
D 4 HOH A 97 697 87 HOH HOH . 
D 4 HOH A 98 698 101 HOH HOH . 
D 4 HOH A 99 699 78 HOH HOH . 
D 4 HOH A 100 700 86 HOH HOH . 
D 4 HOH A 101 701 110 HOH HOH . 
D 4 HOH A 102 702 40 HOH HOH . 
D 4 HOH A 103 703 50 HOH HOH . 
D 4 HOH A 104 704 66 HOH HOH . 
D 4 HOH A 105 705 71 HOH HOH . 
D 4 HOH A 106 706 61 HOH HOH . 
D 4 HOH A 107 707 94 HOH HOH . 
D 4 HOH A 108 708 119 HOH HOH . 
D 4 HOH A 109 709 102 HOH HOH . 
D 4 HOH A 110 710 70 HOH HOH . 
D 4 HOH A 111 711 75 HOH HOH . 
D 4 HOH A 112 712 69 HOH HOH . 
D 4 HOH A 113 713 85 HOH HOH . 
D 4 HOH A 114 714 93 HOH HOH . 
D 4 HOH A 115 715 115 HOH HOH . 
D 4 HOH A 116 716 82 HOH HOH . 
D 4 HOH A 117 717 90 HOH HOH . 
D 4 HOH A 118 718 91 HOH HOH . 
D 4 HOH A 119 719 114 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . C 3 -1.322 3.063 7.751 1 29.3 ? C1 EDO 502 A 1 
HETATM 2 O O1 EDO . . . C 3 -0.736 2.925 9.041 1 29.58 ? O1 EDO 502 A 1 
HETATM 3 C C2 EDO . . . C 3 -1.063 1.76 7.035 1 27.3 ? C2 EDO 502 A 1 
HETATM 4 O O2 EDO . . . C 3 0.356 1.578 6.952 1 21.53 ? O2 EDO 502 A 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           332 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           4 
#