data_4Z93 # _model_server_result.job_id wRGlzGlPwQvSWBDgX1HCMw _model_server_result.datetime_utc '2024-11-05 01:27:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4z93 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":502}' # _entry.id 4Z93 # _exptl.entry_id 4Z93 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4Z93 _cell.length_a 51.862 _cell.length_b 72.696 _cell.length_c 32.115 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4Z93 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C LYS 7 A LYS 355 1_555 A N CME 8 A CME 356 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.355 ? covale ? covale2 A C CME 8 A CME 356 1_555 A N CYS 9 A CYS 357 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.348 ? covale ? covale3 A C TYR 42 A TYR 390 1_555 A N CME 43 A CME 391 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.314 ? covale ? covale4 A C CME 43 A CME 391 1_555 A N ASP 44 A ASP 392 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 163 n n C1 C2 EDO sing 164 n n C1 H11 EDO sing 165 n n C1 H12 EDO sing 166 n n O1 HO1 EDO sing 167 n n C2 O2 EDO sing 168 n n C2 H21 EDO sing 169 n n C2 H22 EDO sing 170 n n O2 HO2 EDO sing 171 n n # _atom_sites.entry_id 4Z93 _atom_sites.fract_transf_matrix[1][1] 0.019282 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013756 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.031138 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 4LD A 1 501 1 4LD R37 . C 3 EDO A 1 502 1 EDO EDO . D 4 HOH A 1 601 116 HOH HOH . D 4 HOH A 2 602 73 HOH HOH . D 4 HOH A 3 603 112 HOH HOH . D 4 HOH A 4 604 3 HOH HOH . D 4 HOH A 5 605 96 HOH HOH . D 4 HOH A 6 606 118 HOH HOH . D 4 HOH A 7 607 27 HOH HOH . D 4 HOH A 8 608 4 HOH HOH . D 4 HOH A 9 609 18 HOH HOH . D 4 HOH A 10 610 1 HOH HOH . D 4 HOH A 11 611 49 HOH HOH . D 4 HOH A 12 612 35 HOH HOH . D 4 HOH A 13 613 59 HOH HOH . D 4 HOH A 14 614 95 HOH HOH . D 4 HOH A 15 615 57 HOH HOH . D 4 HOH A 16 616 24 HOH HOH . D 4 HOH A 17 617 88 HOH HOH . D 4 HOH A 18 618 10 HOH HOH . D 4 HOH A 19 619 46 HOH HOH . D 4 HOH A 20 620 37 HOH HOH . D 4 HOH A 21 621 29 HOH HOH . D 4 HOH A 22 622 104 HOH HOH . D 4 HOH A 23 623 113 HOH HOH . D 4 HOH A 24 624 34 HOH HOH . D 4 HOH A 25 625 103 HOH HOH . D 4 HOH A 26 626 16 HOH HOH . D 4 HOH A 27 627 20 HOH HOH . D 4 HOH A 28 628 67 HOH HOH . D 4 HOH A 29 629 106 HOH HOH . D 4 HOH A 30 630 41 HOH HOH . D 4 HOH A 31 631 44 HOH HOH . D 4 HOH A 32 632 11 HOH HOH . D 4 HOH A 33 633 76 HOH HOH . D 4 HOH A 34 634 13 HOH HOH . D 4 HOH A 35 635 2 HOH HOH . D 4 HOH A 36 636 79 HOH HOH . D 4 HOH A 37 637 19 HOH HOH . D 4 HOH A 38 638 15 HOH HOH . D 4 HOH A 39 639 64 HOH HOH . D 4 HOH A 40 640 99 HOH HOH . D 4 HOH A 41 641 48 HOH HOH . D 4 HOH A 42 642 42 HOH HOH . D 4 HOH A 43 643 107 HOH HOH . D 4 HOH A 44 644 28 HOH HOH . D 4 HOH A 45 645 77 HOH HOH . D 4 HOH A 46 646 23 HOH HOH . D 4 HOH A 47 647 5 HOH HOH . D 4 HOH A 48 648 36 HOH HOH . D 4 HOH A 49 649 47 HOH HOH . D 4 HOH A 50 650 9 HOH HOH . D 4 HOH A 51 651 32 HOH HOH . D 4 HOH A 52 652 111 HOH HOH . D 4 HOH A 53 653 38 HOH HOH . D 4 HOH A 54 654 6 HOH HOH . D 4 HOH A 55 655 12 HOH HOH . D 4 HOH A 56 656 58 HOH HOH . D 4 HOH A 57 657 7 HOH HOH . D 4 HOH A 58 658 74 HOH HOH . D 4 HOH A 59 659 30 HOH HOH . D 4 HOH A 60 660 33 HOH HOH . D 4 HOH A 61 661 72 HOH HOH . D 4 HOH A 62 662 80 HOH HOH . D 4 HOH A 63 663 83 HOH HOH . D 4 HOH A 64 664 81 HOH HOH . D 4 HOH A 65 665 39 HOH HOH . D 4 HOH A 66 666 21 HOH HOH . D 4 HOH A 67 667 51 HOH HOH . D 4 HOH A 68 668 109 HOH HOH . D 4 HOH A 69 669 22 HOH HOH . D 4 HOH A 70 670 60 HOH HOH . D 4 HOH A 71 671 68 HOH HOH . D 4 HOH A 72 672 43 HOH HOH . D 4 HOH A 73 673 98 HOH HOH . D 4 HOH A 74 674 8 HOH HOH . D 4 HOH A 75 675 54 HOH HOH . D 4 HOH A 76 676 25 HOH HOH . D 4 HOH A 77 677 17 HOH HOH . D 4 HOH A 78 678 117 HOH HOH . D 4 HOH A 79 679 14 HOH HOH . D 4 HOH A 80 680 84 HOH HOH . D 4 HOH A 81 681 105 HOH HOH . D 4 HOH A 82 682 26 HOH HOH . D 4 HOH A 83 683 45 HOH HOH . D 4 HOH A 84 684 97 HOH HOH . D 4 HOH A 85 685 92 HOH HOH . D 4 HOH A 86 686 31 HOH HOH . D 4 HOH A 87 687 63 HOH HOH . D 4 HOH A 88 688 55 HOH HOH . D 4 HOH A 89 689 53 HOH HOH . D 4 HOH A 90 690 108 HOH HOH . D 4 HOH A 91 691 56 HOH HOH . D 4 HOH A 92 692 52 HOH HOH . D 4 HOH A 93 693 100 HOH HOH . D 4 HOH A 94 694 89 HOH HOH . D 4 HOH A 95 695 65 HOH HOH . D 4 HOH A 96 696 62 HOH HOH . D 4 HOH A 97 697 87 HOH HOH . D 4 HOH A 98 698 101 HOH HOH . D 4 HOH A 99 699 78 HOH HOH . D 4 HOH A 100 700 86 HOH HOH . D 4 HOH A 101 701 110 HOH HOH . D 4 HOH A 102 702 40 HOH HOH . D 4 HOH A 103 703 50 HOH HOH . D 4 HOH A 104 704 66 HOH HOH . D 4 HOH A 105 705 71 HOH HOH . D 4 HOH A 106 706 61 HOH HOH . D 4 HOH A 107 707 94 HOH HOH . D 4 HOH A 108 708 119 HOH HOH . D 4 HOH A 109 709 102 HOH HOH . D 4 HOH A 110 710 70 HOH HOH . D 4 HOH A 111 711 75 HOH HOH . D 4 HOH A 112 712 69 HOH HOH . D 4 HOH A 113 713 85 HOH HOH . D 4 HOH A 114 714 93 HOH HOH . D 4 HOH A 115 715 115 HOH HOH . D 4 HOH A 116 716 82 HOH HOH . D 4 HOH A 117 717 90 HOH HOH . D 4 HOH A 118 718 91 HOH HOH . D 4 HOH A 119 719 114 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . C 3 -1.322 3.063 7.751 1 29.3 ? C1 EDO 502 A 1 HETATM 2 O O1 EDO . . . C 3 -0.736 2.925 9.041 1 29.58 ? O1 EDO 502 A 1 HETATM 3 C C2 EDO . . . C 3 -1.063 1.76 7.035 1 27.3 ? C2 EDO 502 A 1 HETATM 4 O O2 EDO . . . C 3 0.356 1.578 6.952 1 21.53 ? O2 EDO 502 A 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 283 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 4 #