data_4Z9B # _model_server_result.job_id pKtVZxBJfnpJQZ1FiaSqeQ _model_server_result.datetime_utc '2024-11-24 16:26:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4z9b # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 4Z9B # _exptl.entry_id 4Z9B _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 172.118 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'benzylphosphonic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4Z9B _cell.length_a 32.088 _cell.length_b 54.287 _cell.length_c 97.468 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4Z9B _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C7 H9 O3 P' _chem_comp.formula_weight 172.118 _chem_comp.id B85 _chem_comp.mon_nstd_flag . _chem_comp.name 'benzylphosphonic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C6 C1 B85 doub 70 n y C2 C1 B85 sing 71 n y C1 H1 B85 sing 72 n n C3 C2 B85 doub 73 n y C2 H2 B85 sing 74 n n C4 C3 B85 sing 75 n y C3 H3 B85 sing 76 n n C4 C5 B85 doub 77 n y C4 H4 B85 sing 78 n n C5 C6 B85 sing 79 n y C5 H5 B85 sing 80 n n C6 C7 B85 sing 81 n n P8 C7 B85 sing 82 n n C7 H7 B85 sing 83 n n C7 H7A B85 sing 84 n n O9 P8 B85 doub 85 n n O11 P8 B85 sing 86 n n P8 O10 B85 sing 87 n n O10 HO10 B85 sing 88 n n O11 HO11 B85 sing 89 n n # _atom_sites.entry_id 4Z9B _atom_sites.fract_transf_matrix[1][1] 0.031164 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018421 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01026 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 B85 A 1 301 301 B85 B85 . C 3 HOH A 1 401 203 HOH HOH . C 3 HOH A 2 402 234 HOH HOH . C 3 HOH A 3 403 210 HOH HOH . C 3 HOH A 4 404 201 HOH HOH . C 3 HOH A 5 405 233 HOH HOH . C 3 HOH A 6 406 248 HOH HOH . C 3 HOH A 7 407 253 HOH HOH . C 3 HOH A 8 408 224 HOH HOH . C 3 HOH A 9 409 221 HOH HOH . C 3 HOH A 10 410 223 HOH HOH . C 3 HOH A 11 411 240 HOH HOH . C 3 HOH A 12 412 218 HOH HOH . C 3 HOH A 13 413 243 HOH HOH . C 3 HOH A 14 414 241 HOH HOH . C 3 HOH A 15 415 236 HOH HOH . C 3 HOH A 16 416 212 HOH HOH . C 3 HOH A 17 417 207 HOH HOH . C 3 HOH A 18 418 232 HOH HOH . C 3 HOH A 19 419 214 HOH HOH . C 3 HOH A 20 420 258 HOH HOH . C 3 HOH A 21 421 262 HOH HOH . C 3 HOH A 22 422 231 HOH HOH . C 3 HOH A 23 423 261 HOH HOH . C 3 HOH A 24 424 216 HOH HOH . C 3 HOH A 25 425 256 HOH HOH . C 3 HOH A 26 426 206 HOH HOH . C 3 HOH A 27 427 235 HOH HOH . C 3 HOH A 28 428 202 HOH HOH . C 3 HOH A 29 429 211 HOH HOH . C 3 HOH A 30 430 208 HOH HOH . C 3 HOH A 31 431 204 HOH HOH . C 3 HOH A 32 432 237 HOH HOH . C 3 HOH A 33 433 245 HOH HOH . C 3 HOH A 34 434 260 HOH HOH . C 3 HOH A 35 435 263 HOH HOH . C 3 HOH A 36 436 226 HOH HOH . C 3 HOH A 37 437 266 HOH HOH . C 3 HOH A 38 438 246 HOH HOH . C 3 HOH A 39 439 217 HOH HOH . C 3 HOH A 40 440 238 HOH HOH . C 3 HOH A 41 441 255 HOH HOH . C 3 HOH A 42 442 219 HOH HOH . C 3 HOH A 43 443 215 HOH HOH . C 3 HOH A 44 444 242 HOH HOH . C 3 HOH A 45 445 239 HOH HOH . C 3 HOH A 46 446 229 HOH HOH . C 3 HOH A 47 447 249 HOH HOH . C 3 HOH A 48 448 250 HOH HOH . C 3 HOH A 49 449 254 HOH HOH . C 3 HOH A 50 450 252 HOH HOH . C 3 HOH A 51 451 209 HOH HOH . C 3 HOH A 52 452 225 HOH HOH . C 3 HOH A 53 453 244 HOH HOH . C 3 HOH A 54 454 267 HOH HOH . C 3 HOH A 55 455 251 HOH HOH . C 3 HOH A 56 456 257 HOH HOH . C 3 HOH A 57 457 222 HOH HOH . C 3 HOH A 58 458 230 HOH HOH . C 3 HOH A 59 459 227 HOH HOH . C 3 HOH A 60 460 259 HOH HOH . C 3 HOH A 61 461 205 HOH HOH . C 3 HOH A 62 462 265 HOH HOH . C 3 HOH A 63 463 268 HOH HOH . C 3 HOH A 64 464 247 HOH HOH . C 3 HOH A 65 465 213 HOH HOH . C 3 HOH A 66 466 228 HOH HOH . C 3 HOH A 67 467 220 HOH HOH . C 3 HOH A 68 468 264 HOH HOH . C 3 HOH A 69 469 269 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 B85 . . . B 2 2.2 10.819 -0.205 1 33.72 ? C1 B85 301 A 1 HETATM 2 C C2 B85 . . . B 2 2.053 12.147 -0.52 1 33.18 ? C2 B85 301 A 1 HETATM 3 C C3 B85 . . . B 2 3.138 13.019 -0.457 1 35.63 ? C3 B85 301 A 1 HETATM 4 C C4 B85 . . . B 2 4.394 12.556 -0.087 1 35.43 ? C4 B85 301 A 1 HETATM 5 C C5 B85 . . . B 2 4.54 11.206 0.219 1 37.04 ? C5 B85 301 A 1 HETATM 6 C C6 B85 . . . B 2 3.444 10.34 0.189 1 35.76 ? C6 B85 301 A 1 HETATM 7 C C7 B85 . . . B 2 3.634 8.851 0.496 1 36.73 ? C7 B85 301 A 1 HETATM 8 P P8 B85 . . . B 2 3.625 8.326 2.247 1 36.96 ? P8 B85 301 A 1 HETATM 9 O O9 B85 . . . B 2 3.684 6.846 2.334 1 35.61 ? O9 B85 301 A 1 HETATM 10 O O10 B85 . . . B 2 5.062 8.844 2.812 1 35.4 ? O10 B85 301 A 1 HETATM 11 O O11 B85 . . . B 2 2.262 8.956 2.865 1 31.91 ? O11 B85 301 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 479 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 11 #