data_4Z9G # _model_server_result.job_id OmgDVdGjBGRHV5jDdI6Nyg _model_server_result.datetime_utc '2024-11-15 01:04:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4z9g # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"R","auth_seq_id":1205}' # _entry.id 4Z9G # _exptl.entry_id 4Z9G _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 326.476 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3,6-dimethyl-N-(pentan-3-yl)-2-(2,4,6-trimethylphenoxy)pyridin-4-amine _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4Z9G _cell.length_a 189.359 _cell.length_b 189.359 _cell.length_c 88.575 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4Z9G _symmetry.cell_setting ? _symmetry.Int_Tables_number 168 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 6' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 ? monomeric 1 author_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,E,F,G,H,I 1 1 B,J,K,L,M 2 1 C,N,O,P,Q,R,S 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 G N N ? 3 M N N ? 3 R N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 86 A CYS 188 1_555 A SG CYS 315 A CYS 258 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf2 B SG CYS 86 B CYS 188 1_555 B SG CYS 315 B CYS 258 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf3 C SG CYS 86 C CYS 188 1_555 C SG CYS 315 C CYS 258 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? # _chem_comp.formula 'C21 H30 N2 O' _chem_comp.formula_weight 326.476 _chem_comp.id 1Q5 _chem_comp.mon_nstd_flag . _chem_comp.name 3,6-dimethyl-N-(pentan-3-yl)-2-(2,4,6-trimethylphenoxy)pyridin-4-amine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C8 C6 1Q5 sing 1 n n C18 C13 1Q5 sing 2 n n C5 C6 1Q5 doub 3 n y C5 C4 1Q5 sing 4 n y C7 C4 1Q5 sing 5 n n C6 C1 1Q5 sing 6 n y C4 C3 1Q5 doub 7 n y C13 N12 1Q5 doub 8 n y C13 C14 1Q5 sing 9 n y C22 C21 1Q5 sing 10 n n N12 C11 1Q5 sing 11 n y C14 C15 1Q5 doub 12 n y C1 O10 1Q5 sing 13 n n C1 C2 1Q5 doub 14 n y C21 C20 1Q5 sing 15 n n C3 C2 1Q5 sing 16 n y C11 O10 1Q5 sing 17 n n C11 C16 1Q5 doub 18 n y C20 N19 1Q5 sing 19 n n C20 C23 1Q5 sing 20 n n C15 C16 1Q5 sing 21 n y C15 N19 1Q5 sing 22 n n C2 C9 1Q5 sing 23 n n C16 C17 1Q5 sing 24 n n C23 C24 1Q5 sing 25 n n C18 H1 1Q5 sing 26 n n C18 H2 1Q5 sing 27 n n C18 H3 1Q5 sing 28 n n C20 H4 1Q5 sing 29 n n C17 H5 1Q5 sing 30 n n C17 H6 1Q5 sing 31 n n C17 H7 1Q5 sing 32 n n C14 H8 1Q5 sing 33 n n C7 H9 1Q5 sing 34 n n C7 H10 1Q5 sing 35 n n C7 H11 1Q5 sing 36 n n C8 H12 1Q5 sing 37 n n C8 H13 1Q5 sing 38 n n C8 H14 1Q5 sing 39 n n C9 H15 1Q5 sing 40 n n C9 H16 1Q5 sing 41 n n C9 H17 1Q5 sing 42 n n C5 H18 1Q5 sing 43 n n C3 H19 1Q5 sing 44 n n C24 H20 1Q5 sing 45 n n C24 H21 1Q5 sing 46 n n C24 H22 1Q5 sing 47 n n C23 H23 1Q5 sing 48 n n C23 H24 1Q5 sing 49 n n C21 H25 1Q5 sing 50 n n C21 H26 1Q5 sing 51 n n C22 H27 1Q5 sing 52 n n C22 H28 1Q5 sing 53 n n C22 H29 1Q5 sing 54 n n N19 H30 1Q5 sing 55 n n # _atom_sites.entry_id 4Z9G _atom_sites.fract_transf_matrix[1][1] 0.005281 _atom_sites.fract_transf_matrix[1][2] 0.003049 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006098 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01129 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 OLA A 1 1201 801 OLA OLA . E 2 OLA A 1 1202 802 OLA OLA . F 2 OLA A 1 1203 803 OLA OLA . G 3 1Q5 A 1 1204 901 1Q5 1Q5 . H 4 SO4 A 1 1205 903 SO4 SO4 . I 4 SO4 A 1 1206 1 SO4 SO4 . J 2 OLA B 1 1201 801 OLA OLA . K 2 OLA B 1 1202 802 OLA OLA . L 2 OLA B 1 1203 804 OLA OLA . M 3 1Q5 B 1 1204 901 1Q5 1Q5 . N 2 OLA C 1 1201 801 OLA OLA . O 2 OLA C 1 1202 802 OLA OLA . P 2 OLA C 1 1203 803 OLA OLA . Q 2 OLA C 1 1204 804 OLA OLA . R 3 1Q5 C 1 1205 901 1Q5 1Q5 . S 4 SO4 C 1 1206 1 SO4 SO4 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C18 1Q5 . . . R 3 -35.629 94.319 -22.827 1 86.8 ? C18 1Q5 1205 C 1 HETATM 2 C C20 1Q5 . . . R 3 -36.273 97.993 -26.408 1 89.41 ? C20 1Q5 1205 C 1 HETATM 3 C C1 1Q5 . . . R 3 -36.839 97.458 -19.229 1 98.04 ? C1 1Q5 1205 C 1 HETATM 4 C C17 1Q5 . . . R 3 -36.758 99.975 -22.628 1 86.42 ? C17 1Q5 1205 C 1 HETATM 5 C C16 1Q5 . . . R 3 -36.455 98.508 -22.726 1 88.35 ? C16 1Q5 1205 C 1 HETATM 6 C C15 1Q5 . . . R 3 -36.091 97.87 -23.989 1 88.52 ? C15 1Q5 1205 C 1 HETATM 7 C C14 1Q5 . . . R 3 -35.834 96.511 -23.97 1 86.99 ? C14 1Q5 1205 C 1 HETATM 8 C C13 1Q5 . . . R 3 -35.916 95.785 -22.802 1 86.48 ? C13 1Q5 1205 C 1 HETATM 9 C C11 1Q5 . . . R 3 -36.513 97.644 -21.55 1 90.35 ? C11 1Q5 1205 C 1 HETATM 10 C C6 1Q5 . . . R 3 -38.052 96.776 -18.754 1 98.22 ? C6 1Q5 1205 C 1 HETATM 11 C C7 1Q5 . . . R 3 -36.79 95.225 -15.553 1 99.74 ? C7 1Q5 1205 C 1 HETATM 12 C C8 1Q5 . . . R 3 -39.308 96.859 -19.565 1 97.58 ? C8 1Q5 1205 C 1 HETATM 13 C C9 1Q5 . . . R 3 -34.374 98.044 -18.838 1 99.16 ? C9 1Q5 1205 C 1 HETATM 14 C C5 1Q5 . . . R 3 -38.006 96.064 -17.569 1 99.12 ? C5 1Q5 1205 C 1 HETATM 15 C C4 1Q5 . . . R 3 -36.827 96 -16.832 1 99.72 ? C4 1Q5 1205 C 1 HETATM 16 C C3 1Q5 . . . R 3 -35.664 96.631 -17.233 1 100.53 ? C3 1Q5 1205 C 1 HETATM 17 C C2 1Q5 . . . R 3 -35.628 97.361 -18.402 1 99.73 ? C2 1Q5 1205 C 1 HETATM 18 C C24 1Q5 . . . R 3 -33.877 98.582 -26.725 1 87.53 ? C24 1Q5 1205 C 1 HETATM 19 C C23 1Q5 . . . R 3 -35.23 98.484 -27.385 1 88.71 ? C23 1Q5 1205 C 1 HETATM 20 C C21 1Q5 . . . R 3 -37.638 98.37 -26.948 1 88.01 ? C21 1Q5 1205 C 1 HETATM 21 C C22 1Q5 . . . R 3 -38.689 98.264 -25.874 1 88.21 ? C22 1Q5 1205 C 1 HETATM 22 N N19 1Q5 . . . R 3 -36.02 98.596 -25.12 1 89.97 ? N19 1Q5 1205 C 1 HETATM 23 N N12 1Q5 . . . R 3 -36.247 96.348 -21.638 1 87.62 ? N12 1Q5 1205 C 1 HETATM 24 O O10 1Q5 . . . R 3 -36.838 98.184 -20.371 1 95.16 ? O10 1Q5 1205 C 1 # _model_server_stats.io_time_ms 35 _model_server_stats.parse_time_ms 298 _model_server_stats.create_model_time_ms 316 _model_server_stats.query_time_ms 792 _model_server_stats.encode_time_ms 12 _model_server_stats.element_count 24 #