data_4Z9L # _model_server_result.job_id MPYJA8sCePjOhyFI7PZVsA _model_server_result.datetime_utc '2024-11-28 22:07:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4z9l # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 4Z9L # _exptl.entry_id 4Z9L _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 506.196 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4Z9L _cell.length_a 50.951 _cell.length_b 71.525 _cell.length_c 106 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4Z9L _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 86 n n PG O2G ANP sing 87 n n PG O3G ANP sing 88 n n PG N3B ANP sing 89 n n O2G HOG2 ANP sing 90 n n O3G HOG3 ANP sing 91 n n PB O1B ANP doub 92 n n PB O2B ANP sing 93 n n PB N3B ANP sing 94 n n PB O3A ANP sing 95 n n O2B HOB2 ANP sing 96 n n N3B HNB1 ANP sing 97 n n PA O1A ANP doub 98 n n PA O2A ANP sing 99 n n PA O3A ANP sing 100 n n PA O5' ANP sing 101 n n O2A HOA2 ANP sing 102 n n O5' C5' ANP sing 103 n n C5' C4' ANP sing 104 n n C5' "H5'1" ANP sing 105 n n C5' "H5'2" ANP sing 106 n n C4' O4' ANP sing 107 n n C4' C3' ANP sing 108 n n C4' H4' ANP sing 109 n n O4' C1' ANP sing 110 n n C3' O3' ANP sing 111 n n C3' C2' ANP sing 112 n n C3' H3' ANP sing 113 n n O3' HO3' ANP sing 114 n n C2' O2' ANP sing 115 n n C2' C1' ANP sing 116 n n C2' H2' ANP sing 117 n n O2' HO2' ANP sing 118 n n C1' N9 ANP sing 119 n n C1' H1' ANP sing 120 n n N9 C8 ANP sing 121 n y N9 C4 ANP sing 122 n y C8 N7 ANP doub 123 n y C8 H8 ANP sing 124 n n N7 C5 ANP sing 125 n y C5 C6 ANP sing 126 n y C5 C4 ANP doub 127 n y C6 N6 ANP sing 128 n n C6 N1 ANP doub 129 n y N6 HN61 ANP sing 130 n n N6 HN62 ANP sing 131 n n N1 C2 ANP sing 132 n y C2 N3 ANP doub 133 n y C2 H2 ANP sing 134 n n N3 C4 ANP sing 135 n y # _atom_sites.entry_id 4Z9L _atom_sites.fract_transf_matrix[1][1] 0.019627 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013981 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009434 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ANP A 1 501 502 ANP ANP . C 3 880 A 1 502 501 880 880 . D 4 UNX A 1 503 2001 UNX UNX . E 4 UNX A 1 504 2002 UNX UNX . F 4 UNX A 1 505 2003 UNX UNX . G 5 HOH A 1 601 604 HOH HOH . G 5 HOH A 2 602 623 HOH HOH . G 5 HOH A 3 603 624 HOH HOH . G 5 HOH A 4 604 651 HOH HOH . G 5 HOH A 5 605 1012 HOH HOH . G 5 HOH A 6 606 611 HOH HOH . G 5 HOH A 7 607 614 HOH HOH . G 5 HOH A 8 608 665 HOH HOH . G 5 HOH A 9 609 1005 HOH HOH . G 5 HOH A 10 610 625 HOH HOH . G 5 HOH A 11 611 1006 HOH HOH . G 5 HOH A 12 612 613 HOH HOH . G 5 HOH A 13 613 1002 HOH HOH . G 5 HOH A 14 614 606 HOH HOH . G 5 HOH A 15 615 1004 HOH HOH . G 5 HOH A 16 616 629 HOH HOH . G 5 HOH A 17 617 631 HOH HOH . G 5 HOH A 18 618 609 HOH HOH . G 5 HOH A 19 619 633 HOH HOH . G 5 HOH A 20 620 603 HOH HOH . G 5 HOH A 21 621 664 HOH HOH . G 5 HOH A 22 622 608 HOH HOH . G 5 HOH A 23 623 634 HOH HOH . G 5 HOH A 24 624 656 HOH HOH . G 5 HOH A 25 625 602 HOH HOH . G 5 HOH A 26 626 607 HOH HOH . G 5 HOH A 27 627 610 HOH HOH . G 5 HOH A 28 628 654 HOH HOH . G 5 HOH A 29 629 655 HOH HOH . G 5 HOH A 30 630 616 HOH HOH . G 5 HOH A 31 631 601 HOH HOH . G 5 HOH A 32 632 1013 HOH HOH . G 5 HOH A 33 633 617 HOH HOH . G 5 HOH A 34 634 619 HOH HOH . G 5 HOH A 35 635 1014 HOH HOH . G 5 HOH A 36 636 640 HOH HOH . G 5 HOH A 37 637 658 HOH HOH . G 5 HOH A 38 638 628 HOH HOH . G 5 HOH A 39 639 612 HOH HOH . G 5 HOH A 40 640 615 HOH HOH . G 5 HOH A 41 641 627 HOH HOH . G 5 HOH A 42 642 1001 HOH HOH . G 5 HOH A 43 643 1016 HOH HOH . G 5 HOH A 44 644 671 HOH HOH . G 5 HOH A 45 645 1009 HOH HOH . G 5 HOH A 46 646 639 HOH HOH . G 5 HOH A 47 647 1015 HOH HOH . G 5 HOH A 48 648 677 HOH HOH . G 5 HOH A 49 649 663 HOH HOH . G 5 HOH A 50 650 626 HOH HOH . G 5 HOH A 51 651 605 HOH HOH . G 5 HOH A 52 652 1003 HOH HOH . G 5 HOH A 53 653 1011 HOH HOH . G 5 HOH A 54 654 632 HOH HOH . G 5 HOH A 55 655 1007 HOH HOH . G 5 HOH A 56 656 1008 HOH HOH . G 5 HOH A 57 657 680 HOH HOH . G 5 HOH A 58 658 1010 HOH HOH . G 5 HOH A 59 659 647 HOH HOH . G 5 HOH A 60 660 669 HOH HOH . G 5 HOH A 61 661 649 HOH HOH . G 5 HOH A 62 662 646 HOH HOH . G 5 HOH A 63 663 682 HOH HOH . G 5 HOH A 64 664 659 HOH HOH . G 5 HOH A 65 665 641 HOH HOH . G 5 HOH A 66 666 642 HOH HOH . G 5 HOH A 67 667 648 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ANP . . . B 2 23.108 19.289 28.098 0.66 35.29 ? PG ANP 501 A 1 HETATM 2 O O1G ANP . . . B 2 21.723 19.571 27.371 0.66 37.15 ? O1G ANP 501 A 1 HETATM 3 O O2G ANP . . . B 2 23.618 20.536 28.925 0.66 34.54 ? O2G ANP 501 A 1 HETATM 4 O O3G ANP . . . B 2 22.872 18.19 29.021 0.66 35.91 ? O3G ANP 501 A 1 HETATM 5 P PB ANP . . . B 2 25.792 18.684 26.97 0.66 24.41 ? PB ANP 501 A 1 HETATM 6 O O1B ANP . . . B 2 26.055 17.235 27.536 0.66 23.49 ? O1B ANP 501 A 1 HETATM 7 O O2B ANP . . . B 2 26.455 19.66 27.819 0.66 22.9 ? O2B ANP 501 A 1 HETATM 8 N N3B ANP . . . B 2 24.183 18.942 26.901 0.66 31.15 ? N3B ANP 501 A 1 HETATM 9 P PA ANP . . . B 2 26.066 17.513 24.349 0.66 29.09 ? PA ANP 501 A 1 HETATM 10 O O1A ANP . . . B 2 25.113 18.125 23.336 0.66 29.77 ? O1A ANP 501 A 1 HETATM 11 O O2A ANP . . . B 2 25.423 16.335 24.969 0.66 25.82 ? O2A ANP 501 A 1 HETATM 12 O O3A ANP . . . B 2 26.343 18.589 25.496 0.66 27.29 ? O3A ANP 501 A 1 HETATM 13 O O5' ANP . . . B 2 27.437 17.23 23.553 0.66 31.42 ? O5' ANP 501 A 1 HETATM 14 C C5' ANP . . . B 2 28.584 16.629 24.189 0.66 33.19 ? C5' ANP 501 A 1 HETATM 15 C C4' ANP . . . B 2 29.66 16.4 23.158 0.66 36.62 ? C4' ANP 501 A 1 HETATM 16 O O4' ANP . . . B 2 29.19 15.45 22.174 0.66 35.13 ? O4' ANP 501 A 1 HETATM 17 C C3' ANP . . . B 2 30.121 17.642 22.381 0.66 40.44 ? C3' ANP 501 A 1 HETATM 18 O O3' ANP . . . B 2 31.539 17.668 22.228 0.66 43.4 ? O3' ANP 501 A 1 HETATM 19 C C2' ANP . . . B 2 29.391 17.501 21.038 0.66 38.82 ? C2' ANP 501 A 1 HETATM 20 O O2' ANP . . . B 2 30.09 18.102 19.952 0.66 40.85 ? O2' ANP 501 A 1 HETATM 21 C C1' ANP . . . B 2 29.354 15.983 20.874 0.66 36.38 ? C1' ANP 501 A 1 HETATM 22 N N9 ANP . . . B 2 28.269 15.481 20.032 0.66 34.89 ? N9 ANP 501 A 1 HETATM 23 C C8 ANP . . . B 2 26.945 15.823 20.108 0.66 33.58 ? C8 ANP 501 A 1 HETATM 24 N N7 ANP . . . B 2 26.163 15.112 19.333 0.66 33.08 ? N7 ANP 501 A 1 HETATM 25 C C5 ANP . . . B 2 27.033 14.234 18.707 0.66 34.86 ? C5 ANP 501 A 1 HETATM 26 C C6 ANP . . . B 2 26.823 13.183 17.793 0.66 33.8 ? C6 ANP 501 A 1 HETATM 27 N N6 ANP . . . B 2 25.618 12.736 17.446 0.66 32.61 ? N6 ANP 501 A 1 HETATM 28 N N1 ANP . . . B 2 27.911 12.523 17.331 0.66 35.1 ? N1 ANP 501 A 1 HETATM 29 C C2 ANP . . . B 2 29.118 12.874 17.79 0.66 37.01 ? C2 ANP 501 A 1 HETATM 30 N N3 ANP . . . B 2 29.436 13.826 18.677 0.66 37.37 ? N3 ANP 501 A 1 HETATM 31 C C4 ANP . . . B 2 28.34 14.469 19.107 0.66 35.91 ? C4 ANP 501 A 1 HETATM 32 H HNB1 ANP . . . B 2 23.786 18.877 25.969 0 30.87 ? HNB1 ANP 501 A 1 HETATM 33 H "H5'1" ANP . . . B 2 28.207 15.697 24.608 0 32.63 ? "H5'1" ANP 501 A 1 HETATM 34 H "H5'2" ANP . . . B 2 28.959 17.239 25.01 0 33.52 ? "H5'2" ANP 501 A 1 HETATM 35 H H4' ANP . . . B 2 30.512 15.888 23.603 0 37.35 ? H4' ANP 501 A 1 HETATM 36 H H3' ANP . . . B 2 29.833 18.549 22.911 0 40.2 ? H3' ANP 501 A 1 HETATM 37 H HO3' ANP . . . B 2 31.859 16.777 21.927 0 43.61 ? HO3' ANP 501 A 1 HETATM 38 H H2' ANP . . . B 2 28.398 17.938 21.125 0 37.83 ? H2' ANP 501 A 1 HETATM 39 H HO2' ANP . . . B 2 31.035 17.801 19.989 0 41.76 ? HO2' ANP 501 A 1 HETATM 40 H H1' ANP . . . B 2 30.299 15.601 20.493 0 37.35 ? H1' ANP 501 A 1 HETATM 41 H H8 ANP . . . B 2 26.576 16.596 20.779 0 33.2 ? H8 ANP 501 A 1 HETATM 42 H HN61 ANP . . . B 2 24.795 13.183 17.837 0 31.86 ? HN61 ANP 501 A 1 HETATM 43 H HN62 ANP . . . B 2 25.492 11.949 16.818 0 32.72 ? HN62 ANP 501 A 1 HETATM 44 H H2 ANP . . . B 2 29.944 12.28 17.402 0 37.99 ? H2 ANP 501 A 1 # _model_server_stats.io_time_ms 82 _model_server_stats.parse_time_ms 42 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 1309 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 44 #