data_4Z9L # _model_server_result.job_id gt2rcy4UlUb4cxqRBpvihw _model_server_result.datetime_utc '2024-11-28 22:17:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4z9l # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":502}' # _entry.id 4Z9L # _exptl.entry_id 4Z9L _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 513.505 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description CYCLOHEXYL-{4-[5-(3,4-DICHLOROPHENYL)-2-PIPERIDIN-4-YL-3-PROPYL-3H-IMIDAZOL-4-YL]-PYRIMIDIN-2-YL}AMINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4Z9L _cell.length_a 50.951 _cell.length_b 71.525 _cell.length_c 106 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4Z9L _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C27 H34 Cl2 N6' _chem_comp.formula_weight 513.505 _chem_comp.id 880 _chem_comp.mon_nstd_flag . _chem_comp.name CYCLOHEXYL-{4-[5-(3,4-DICHLOROPHENYL)-2-PIPERIDIN-4-YL-3-PROPYL-3H-IMIDAZOL-4-YL]-PYRIMIDIN-2-YL}AMINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 880 sing 1 n y N1 C5 880 sing 2 n y N1 C6 880 sing 3 n n C2 N3 880 doub 4 n y C2 C16 880 sing 5 n n N3 C4 880 sing 6 n y C4 C5 880 doub 7 n y C4 C35 880 sing 8 n y C5 C36 880 sing 9 n y C6 C7 880 sing 10 n n C6 H061 880 sing 11 n n C6 H062 880 sing 12 n n C7 C10 880 sing 13 n n C7 H071 880 sing 14 n n C7 H072 880 sing 15 n n C10 H101 880 sing 16 n n C10 H102 880 sing 17 n n C10 H103 880 sing 18 n n C16 C17 880 sing 19 n n C16 C21 880 sing 20 n n C16 H16 880 sing 21 n n C17 C18 880 sing 22 n n C17 H171 880 sing 23 n n C17 H172 880 sing 24 n n C18 N19 880 sing 25 n n C18 H181 880 sing 26 n n C18 H182 880 sing 27 n n N19 C20 880 sing 28 n n N19 H19 880 sing 29 n n C20 C21 880 sing 30 n n C20 H201 880 sing 31 n n C20 H202 880 sing 32 n n C21 H211 880 sing 33 n n C21 H212 880 sing 34 n n C35 C37 880 doub 35 n y C35 C41 880 sing 36 n y C36 C47 880 doub 37 n y C36 N51 880 sing 38 n y C37 C38 880 sing 39 n y C37 H37 880 sing 40 n n C38 C39 880 doub 41 n y C38 CL45 880 sing 42 n n C39 C40 880 sing 43 n y C39 CL46 880 sing 44 n n C40 C41 880 doub 45 n y C40 H40 880 sing 46 n n C41 H41 880 sing 47 n n C47 C48 880 sing 48 n y C47 H47 880 sing 49 n n C48 N49 880 doub 50 n y C48 H48 880 sing 51 n n N49 C50 880 sing 52 n y C50 N51 880 doub 53 n y C50 N54 880 sing 54 n n N54 C55 880 sing 55 n n N54 H54 880 sing 56 n n C55 C56 880 sing 57 n n C55 C60 880 sing 58 n n C55 H55 880 sing 59 n n C56 C57 880 sing 60 n n C56 H561 880 sing 61 n n C56 H562 880 sing 62 n n C57 C58 880 sing 63 n n C57 H571 880 sing 64 n n C57 H572 880 sing 65 n n C58 C59 880 sing 66 n n C58 H581 880 sing 67 n n C58 H582 880 sing 68 n n C59 C60 880 sing 69 n n C59 H591 880 sing 70 n n C59 H592 880 sing 71 n n C60 H601 880 sing 72 n n C60 H602 880 sing 73 n n # _atom_sites.entry_id 4Z9L _atom_sites.fract_transf_matrix[1][1] 0.019627 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013981 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009434 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ANP A 1 501 502 ANP ANP . C 3 880 A 1 502 501 880 880 . D 4 UNX A 1 503 2001 UNX UNX . E 4 UNX A 1 504 2002 UNX UNX . F 4 UNX A 1 505 2003 UNX UNX . G 5 HOH A 1 601 604 HOH HOH . G 5 HOH A 2 602 623 HOH HOH . G 5 HOH A 3 603 624 HOH HOH . G 5 HOH A 4 604 651 HOH HOH . G 5 HOH A 5 605 1012 HOH HOH . G 5 HOH A 6 606 611 HOH HOH . G 5 HOH A 7 607 614 HOH HOH . G 5 HOH A 8 608 665 HOH HOH . G 5 HOH A 9 609 1005 HOH HOH . G 5 HOH A 10 610 625 HOH HOH . G 5 HOH A 11 611 1006 HOH HOH . G 5 HOH A 12 612 613 HOH HOH . G 5 HOH A 13 613 1002 HOH HOH . G 5 HOH A 14 614 606 HOH HOH . G 5 HOH A 15 615 1004 HOH HOH . G 5 HOH A 16 616 629 HOH HOH . G 5 HOH A 17 617 631 HOH HOH . G 5 HOH A 18 618 609 HOH HOH . G 5 HOH A 19 619 633 HOH HOH . G 5 HOH A 20 620 603 HOH HOH . G 5 HOH A 21 621 664 HOH HOH . G 5 HOH A 22 622 608 HOH HOH . G 5 HOH A 23 623 634 HOH HOH . G 5 HOH A 24 624 656 HOH HOH . G 5 HOH A 25 625 602 HOH HOH . G 5 HOH A 26 626 607 HOH HOH . G 5 HOH A 27 627 610 HOH HOH . G 5 HOH A 28 628 654 HOH HOH . G 5 HOH A 29 629 655 HOH HOH . G 5 HOH A 30 630 616 HOH HOH . G 5 HOH A 31 631 601 HOH HOH . G 5 HOH A 32 632 1013 HOH HOH . G 5 HOH A 33 633 617 HOH HOH . G 5 HOH A 34 634 619 HOH HOH . G 5 HOH A 35 635 1014 HOH HOH . G 5 HOH A 36 636 640 HOH HOH . G 5 HOH A 37 637 658 HOH HOH . G 5 HOH A 38 638 628 HOH HOH . G 5 HOH A 39 639 612 HOH HOH . G 5 HOH A 40 640 615 HOH HOH . G 5 HOH A 41 641 627 HOH HOH . G 5 HOH A 42 642 1001 HOH HOH . G 5 HOH A 43 643 1016 HOH HOH . G 5 HOH A 44 644 671 HOH HOH . G 5 HOH A 45 645 1009 HOH HOH . G 5 HOH A 46 646 639 HOH HOH . G 5 HOH A 47 647 1015 HOH HOH . G 5 HOH A 48 648 677 HOH HOH . G 5 HOH A 49 649 663 HOH HOH . G 5 HOH A 50 650 626 HOH HOH . G 5 HOH A 51 651 605 HOH HOH . G 5 HOH A 52 652 1003 HOH HOH . G 5 HOH A 53 653 1011 HOH HOH . G 5 HOH A 54 654 632 HOH HOH . G 5 HOH A 55 655 1007 HOH HOH . G 5 HOH A 56 656 1008 HOH HOH . G 5 HOH A 57 657 680 HOH HOH . G 5 HOH A 58 658 1010 HOH HOH . G 5 HOH A 59 659 647 HOH HOH . G 5 HOH A 60 660 669 HOH HOH . G 5 HOH A 61 661 649 HOH HOH . G 5 HOH A 62 662 646 HOH HOH . G 5 HOH A 63 663 682 HOH HOH . G 5 HOH A 64 664 659 HOH HOH . G 5 HOH A 65 665 641 HOH HOH . G 5 HOH A 66 666 642 HOH HOH . G 5 HOH A 67 667 648 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 880 . . . C 3 22.2 11.015 30.757 1 12.68 ? N1 880 502 A 1 HETATM 2 C C2 880 . . . C 3 22.278 12.386 30.719 1 9.88 ? C2 880 502 A 1 HETATM 3 N N3 880 . . . C 3 21.45 12.946 31.558 1 8.72 ? N3 880 502 A 1 HETATM 4 C C4 880 . . . C 3 20.801 11.911 32.2 1 9.23 ? C4 880 502 A 1 HETATM 5 C C5 880 . . . C 3 21.236 10.686 31.715 1 11.16 ? C5 880 502 A 1 HETATM 6 C C6 880 . . . C 3 22.96 10.103 29.894 1 16.69 ? C6 880 502 A 1 HETATM 7 C C7 880 . . . C 3 24.334 9.74 30.448 1 22.19 ? C7 880 502 A 1 HETATM 8 C C10 880 . . . C 3 24.786 10.523 31.642 1 23.62 ? C10 880 502 A 1 HETATM 9 C C16 880 . . . C 3 23.205 13.211 29.862 1 10.22 ? C16 880 502 A 1 HETATM 10 C C17 880 . . . C 3 22.389 13.922 28.779 1 10.67 ? C17 880 502 A 1 HETATM 11 C C18 880 . . . C 3 23.29 14.737 27.872 1 9.92 ? C18 880 502 A 1 HETATM 12 N N19 880 . . . C 3 24.062 15.732 28.667 1 12.06 ? N19 880 502 A 1 HETATM 13 C C20 880 . . . C 3 24.868 15.09 29.745 1 12.84 ? C20 880 502 A 1 HETATM 14 C C21 880 . . . C 3 23.978 14.267 30.657 1 12.61 ? C21 880 502 A 1 HETATM 15 C C35 880 . A . C 3 19.71 12.276 33.127 0.71 8.25 ? C35 880 502 A 1 HETATM 16 C C35 880 . B . C 3 19.855 12.211 33.297 0.29 5.92 ? C35 880 502 A 1 HETATM 17 C C36 880 . . . C 3 20.753 9.318 32.023 1 12.57 ? C36 880 502 A 1 HETATM 18 C C37 880 . A . C 3 19.646 11.729 34.406 0.71 10.72 ? C37 880 502 A 1 HETATM 19 C C37 880 . B . C 3 18.863 13.17 33.118 0.29 4.95 ? C37 880 502 A 1 HETATM 20 C C38 880 . A . C 3 18.662 12.145 35.284 0.71 11.97 ? C38 880 502 A 1 HETATM 21 C C38 880 . B . C 3 17.91 13.372 34.101 0.29 5.84 ? C38 880 502 A 1 HETATM 22 C C39 880 . A . C 3 17.716 13.086 34.891 0.71 12.5 ? C39 880 502 A 1 HETATM 23 C C39 880 . B . C 3 17.943 12.63 35.279 0.29 5.01 ? C39 880 502 A 1 HETATM 24 C C40 880 . A . C 3 17.771 13.623 33.615 0.71 8.35 ? C40 880 502 A 1 HETATM 25 C C40 880 . B . C 3 18.94 11.689 35.47 0.29 5.27 ? C40 880 502 A 1 HETATM 26 C C41 880 . A . C 3 18.766 13.226 32.742 0.71 5.69 ? C41 880 502 A 1 HETATM 27 C C41 880 . B . C 3 19.885 11.475 34.482 0.29 5.53 ? C41 880 502 A 1 HETATM 28 CL CL45 880 . A . C 3 18.669 11.518 36.894 0.71 14.59 ? CL45 880 502 A 1 HETATM 29 CL CL45 880 . B . C 3 16.673 14.551 33.824 0.29 10.77 ? CL45 880 502 A 1 HETATM 30 CL CL46 880 . A . C 3 16.479 13.623 35.983 0.71 16.59 ? CL46 880 502 A 1 HETATM 31 CL CL46 880 . B . C 3 16.73 12.832 36.504 0.29 4.37 ? CL46 880 502 A 1 HETATM 32 C C47 880 . . . C 3 19.46 9.073 32.467 1 13.01 ? C47 880 502 A 1 HETATM 33 C C48 880 . . . C 3 19.153 7.767 32.792 1 13.92 ? C48 880 502 A 1 HETATM 34 N N49 880 . . . C 3 20.012 6.747 32.645 1 13.5 ? N49 880 502 A 1 HETATM 35 C C50 880 . . . C 3 21.205 7.073 32.12 1 14.76 ? C50 880 502 A 1 HETATM 36 N N51 880 . . . C 3 21.636 8.323 31.833 1 14.88 ? N51 880 502 A 1 HETATM 37 N N54 880 . . . C 3 22.003 6.043 31.783 1 16.29 ? N54 880 502 A 1 HETATM 38 C C55 880 . . . C 3 23.316 6.085 31.141 1 16.99 ? C55 880 502 A 1 HETATM 39 C C56 880 . . . C 3 24.136 4.851 31.501 1 17 ? C56 880 502 A 1 HETATM 40 C C57 880 . . . C 3 25.495 4.878 30.809 1 17.1 ? C57 880 502 A 1 HETATM 41 C C58 880 . . . C 3 25.343 4.995 29.296 1 18.73 ? C58 880 502 A 1 HETATM 42 C C59 880 . . . C 3 24.496 6.211 28.918 1 16.56 ? C59 880 502 A 1 HETATM 43 C C60 880 . . . C 3 23.145 6.192 29.631 1 15.68 ? C60 880 502 A 1 HETATM 44 H H061 880 . . . C 3 23.045 10.564 28.912 0 16.4 ? H061 880 502 A 1 HETATM 45 H H062 880 . . . C 3 22.371 9.213 29.683 0 16.82 ? H062 880 502 A 1 HETATM 46 H H071 880 . . . C 3 25.075 9.847 29.658 0 22.4 ? H071 880 502 A 1 HETATM 47 H H072 880 . . . C 3 24.381 8.681 30.69 0 22.75 ? H072 880 502 A 1 HETATM 48 H H101 880 . . . C 3 25.72 10.129 32.036 0 24.4 ? H101 880 502 A 1 HETATM 49 H H102 880 . . . C 3 24.081 10.495 32.472 0 23.48 ? H102 880 502 A 1 HETATM 50 H H103 880 . . . C 3 24.974 11.57 31.41 0 23.33 ? H103 880 502 A 1 HETATM 51 H H16 880 . . . C 3 23.948 12.588 29.368 0 10.6 ? H16 880 502 A 1 HETATM 52 H H171 880 . . . C 3 21.662 14.589 29.239 0 10.41 ? H171 880 502 A 1 HETATM 53 H H172 880 . . . C 3 21.772 13.216 28.226 0 10.45 ? H172 880 502 A 1 HETATM 54 H H181 880 . . . C 3 22.74 15.239 27.078 0 9.6 ? H181 880 502 A 1 HETATM 55 H H182 880 . . . C 3 23.984 14.08 27.349 0 10.14 ? H182 880 502 A 1 HETATM 56 H H19 880 . . . C 3 23.436 16.425 29.064 0 11.78 ? H19 880 502 A 1 HETATM 57 H H201 880 . . . C 3 25.406 15.85 30.309 0 13.17 ? H201 880 502 A 1 HETATM 58 H H202 880 . . . C 3 25.642 14.466 29.301 0 13.21 ? H202 880 502 A 1 HETATM 59 H H211 880 . . . C 3 24.554 13.826 31.469 0 13.04 ? H211 880 502 A 1 HETATM 60 H H212 880 . . . C 3 23.286 14.937 31.165 0 12.32 ? H212 880 502 A 1 HETATM 61 H H37 880 . A . C 3 20.346 10.957 34.719 0 11.17 ? H37 880 502 A 1 HETATM 62 H H37 880 . B . C 3 18.812 13.755 32.201 0 4.62 ? H37 880 502 A 1 HETATM 63 H H40 880 . A . C 3 17.034 14.367 33.315 0 8.33 ? H40 880 502 A 1 HETATM 64 H H40 880 . B . C 3 18.97 11.126 36.401 0 5.63 ? H40 880 502 A 1 HETATM 65 H H41 880 . A . C 3 18.801 13.654 31.741 0 5.35 ? H41 880 502 A 1 HETATM 66 H H41 880 . B . C 3 20.612 10.675 34.606 0 5.76 ? H41 880 502 A 1 HETATM 67 H H47 880 . . . C 3 18.684 9.835 32.483 0 12.62 ? H47 880 502 A 1 HETATM 68 H H48 880 . . . C 3 18.178 7.489 33.188 0 14.15 ? H48 880 502 A 1 HETATM 69 H H54 880 . . . C 3 21.666 5.115 32.018 0 16.86 ? H54 880 502 A 1 HETATM 70 H H55 880 . . . C 3 23.875 6.936 31.523 0 16.77 ? H55 880 502 A 1 HETATM 71 H H561 880 . . . C 3 23.613 3.937 31.226 0 17.44 ? H561 880 502 A 1 HETATM 72 H H562 880 . . . C 3 24.285 4.772 32.577 0 17.45 ? H562 880 502 A 1 HETATM 73 H H571 880 . . . C 3 26.061 3.983 31.063 0 18.24 ? H571 880 502 A 1 HETATM 74 H H572 880 . . . C 3 26.091 5.701 31.2 0 16.97 ? H572 880 502 A 1 HETATM 75 H H581 880 . . . C 3 24.915 4.082 28.886 0 19.15 ? H581 880 502 A 1 HETATM 76 H H582 880 . . . C 3 26.325 5.067 28.83 0 19.25 ? H582 880 502 A 1 HETATM 77 H H591 880 . . . C 3 24.349 6.247 27.839 0 16.32 ? H591 880 502 A 1 HETATM 78 H H592 880 . . . C 3 25.034 7.129 29.148 0 16.36 ? H592 880 502 A 1 HETATM 79 H H601 880 . . . C 3 22.567 7.072 29.355 0 14.86 ? H601 880 502 A 1 HETATM 80 H H602 880 . . . C 3 22.546 5.357 29.271 0 15.98 ? H602 880 502 A 1 HETATM 81 H H192 880 . . . C 3 24.694 16.22 28.041 0 12.27 ? H192 880 502 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 266 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 81 #