data_4Z9R # _model_server_result.job_id B-hUQtwmI4oLN-Vi16UO5A _model_server_result.datetime_utc '2025-09-06 23:02:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4z9r # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":601}' # _entry.id 4Z9R # _exptl.entry_id 4Z9R _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 663.425 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NICOTINAMIDE-ADENINE-DINUCLEOTIDE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4Z9R _cell.length_a 106.68 _cell.length_b 106.68 _cell.length_c 217.477 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4Z9R _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # _chem_comp.formula 'C21 H27 N7 O14 P2' _chem_comp.formula_weight 663.425 _chem_comp.id NAD _chem_comp.mon_nstd_flag . _chem_comp.name NICOTINAMIDE-ADENINE-DINUCLEOTIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAD doub 291 n n PA O2A NAD sing 292 n n PA O5B NAD sing 293 n n PA O3 NAD sing 294 n n O2A HOA2 NAD sing 295 n n O5B C5B NAD sing 296 n n C5B C4B NAD sing 297 n n C5B H51A NAD sing 298 n n C5B H52A NAD sing 299 n n C4B O4B NAD sing 300 n n C4B C3B NAD sing 301 n n C4B H4B NAD sing 302 n n O4B C1B NAD sing 303 n n C3B O3B NAD sing 304 n n C3B C2B NAD sing 305 n n C3B H3B NAD sing 306 n n O3B HO3A NAD sing 307 n n C2B O2B NAD sing 308 n n C2B C1B NAD sing 309 n n C2B H2B NAD sing 310 n n O2B HO2A NAD sing 311 n n C1B N9A NAD sing 312 n n C1B H1B NAD sing 313 n n N9A C8A NAD sing 314 n y N9A C4A NAD sing 315 n y C8A N7A NAD doub 316 n y C8A H8A NAD sing 317 n n N7A C5A NAD sing 318 n y C5A C6A NAD sing 319 n y C5A C4A NAD doub 320 n y C6A N6A NAD sing 321 n n C6A N1A NAD doub 322 n y N6A H61A NAD sing 323 n n N6A H62A NAD sing 324 n n N1A C2A NAD sing 325 n y C2A N3A NAD doub 326 n y C2A H2A NAD sing 327 n n N3A C4A NAD sing 328 n y O3 PN NAD sing 329 n n PN O1N NAD doub 330 n n PN O2N NAD sing 331 n n PN O5D NAD sing 332 n n O5D C5D NAD sing 333 n n C5D C4D NAD sing 334 n n C5D H51N NAD sing 335 n n C5D H52N NAD sing 336 n n C4D O4D NAD sing 337 n n C4D C3D NAD sing 338 n n C4D H4D NAD sing 339 n n O4D C1D NAD sing 340 n n C3D O3D NAD sing 341 n n C3D C2D NAD sing 342 n n C3D H3D NAD sing 343 n n O3D HO3N NAD sing 344 n n C2D O2D NAD sing 345 n n C2D C1D NAD sing 346 n n C2D H2D NAD sing 347 n n O2D HO2N NAD sing 348 n n C1D N1N NAD sing 349 n n C1D H1D NAD sing 350 n n N1N C2N NAD sing 351 n y N1N C6N NAD doub 352 n y C2N C3N NAD doub 353 n y C2N H2N NAD sing 354 n n C3N C7N NAD sing 355 n n C3N C4N NAD sing 356 n y C7N O7N NAD doub 357 n n C7N N7N NAD sing 358 n n N7N H71N NAD sing 359 n n N7N H72N NAD sing 360 n n C4N C5N NAD doub 361 n y C4N H4N NAD sing 362 n n C5N C6N NAD sing 363 n y C5N H5N NAD sing 364 n n C6N H6N NAD sing 365 n n # _atom_sites.entry_id 4Z9R _atom_sites.fract_transf_matrix[1][1] 0.009374 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009374 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004598 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NAD A 1 601 2 NAD NAD . D 3 FMN A 1 602 2 FMN FMN . E 2 NAD B 1 601 1 NAD NAD . F 3 FMN B 1 602 1 FMN FMN . G 4 HOH A 1 701 285 HOH HOH . G 4 HOH A 2 702 338 HOH HOH . G 4 HOH A 3 703 295 HOH HOH . G 4 HOH A 4 704 341 HOH HOH . G 4 HOH A 5 705 336 HOH HOH . G 4 HOH A 6 706 339 HOH HOH . G 4 HOH A 7 707 287 HOH HOH . G 4 HOH A 8 708 286 HOH HOH . G 4 HOH A 9 709 112 HOH HOH . G 4 HOH A 10 710 304 HOH HOH . G 4 HOH A 11 711 312 HOH HOH . G 4 HOH A 12 712 31 HOH HOH . G 4 HOH A 13 713 117 HOH HOH . G 4 HOH A 14 714 331 HOH HOH . G 4 HOH A 15 715 105 HOH HOH . G 4 HOH A 16 716 143 HOH HOH . G 4 HOH A 17 717 5 HOH HOH . G 4 HOH A 18 718 294 HOH HOH . G 4 HOH A 19 719 125 HOH HOH . G 4 HOH A 20 720 95 HOH HOH . G 4 HOH A 21 721 177 HOH HOH . G 4 HOH A 22 722 33 HOH HOH . G 4 HOH A 23 723 311 HOH HOH . G 4 HOH A 24 724 55 HOH HOH . G 4 HOH A 25 725 200 HOH HOH . G 4 HOH A 26 726 107 HOH HOH . G 4 HOH A 27 727 303 HOH HOH . G 4 HOH A 28 728 161 HOH HOH . G 4 HOH A 29 729 198 HOH HOH . G 4 HOH A 30 730 221 HOH HOH . G 4 HOH A 31 731 227 HOH HOH . G 4 HOH A 32 732 257 HOH HOH . H 4 HOH B 1 701 345 HOH HOH . H 4 HOH B 2 702 335 HOH HOH . H 4 HOH B 3 703 342 HOH HOH . H 4 HOH B 4 704 281 HOH HOH . H 4 HOH B 5 705 138 HOH HOH . H 4 HOH B 6 706 43 HOH HOH . H 4 HOH B 7 707 344 HOH HOH . H 4 HOH B 8 708 77 HOH HOH . H 4 HOH B 9 709 315 HOH HOH . H 4 HOH B 10 710 324 HOH HOH . H 4 HOH B 11 711 334 HOH HOH . H 4 HOH B 12 712 46 HOH HOH . H 4 HOH B 13 713 307 HOH HOH . H 4 HOH B 14 714 272 HOH HOH . H 4 HOH B 15 715 343 HOH HOH . H 4 HOH B 16 716 15 HOH HOH . H 4 HOH B 17 717 1 HOH HOH . H 4 HOH B 18 718 17 HOH HOH . H 4 HOH B 19 719 230 HOH HOH . H 4 HOH B 20 720 59 HOH HOH . H 4 HOH B 21 721 206 HOH HOH . H 4 HOH B 22 722 110 HOH HOH . H 4 HOH B 23 723 96 HOH HOH . H 4 HOH B 24 724 259 HOH HOH . H 4 HOH B 25 725 301 HOH HOH . H 4 HOH B 26 726 119 HOH HOH . H 4 HOH B 27 727 158 HOH HOH . H 4 HOH B 28 728 166 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAD . . . E 2 24.205 58.701 -33.721 1 96.65 ? PA NAD 601 B 1 HETATM 2 O O1A NAD . . . E 2 25.414 58.015 -34.253 1 87.96 ? O1A NAD 601 B 1 HETATM 3 O O2A NAD . . . E 2 22.883 58.63 -34.416 1 84.23 ? O2A NAD 601 B 1 HETATM 4 O O5B NAD . . . E 2 24.593 60.217 -33.516 1 91.77 ? O5B NAD 601 B 1 HETATM 5 C C5B NAD . . . E 2 23.833 60.92 -32.553 1 89.59 ? C5B NAD 601 B 1 HETATM 6 C C4B NAD . . . E 2 23.85 62.432 -32.661 1 82.46 ? C4B NAD 601 B 1 HETATM 7 O O4B NAD . . . E 2 24.63 62.833 -31.569 1 76.77 ? O4B NAD 601 B 1 HETATM 8 C C3B NAD . . . E 2 24.587 63.004 -33.832 1 78.9 ? C3B NAD 601 B 1 HETATM 9 O O3B NAD . . . E 2 23.671 63.36 -34.864 1 81.28 ? O3B NAD 601 B 1 HETATM 10 C C2B NAD . . . E 2 25.263 64.215 -33.256 1 74.06 ? C2B NAD 601 B 1 HETATM 11 O O2B NAD . . . E 2 24.345 65.267 -33.151 1 69.56 ? O2B NAD 601 B 1 HETATM 12 C C1B NAD . . . E 2 25.518 63.88 -31.833 1 70.2 ? C1B NAD 601 B 1 HETATM 13 N N9A NAD . . . E 2 26.888 63.424 -31.589 1 66.05 ? N9A NAD 601 B 1 HETATM 14 C C8A NAD . . . E 2 27.31 62.163 -31.518 1 58.57 ? C8A NAD 601 B 1 HETATM 15 N N7A NAD . . . E 2 28.619 62.131 -31.256 1 56.87 ? N7A NAD 601 B 1 HETATM 16 C C5A NAD . . . E 2 29.034 63.397 -31.152 1 60.32 ? C5A NAD 601 B 1 HETATM 17 C C6A NAD . . . E 2 30.295 64.099 -30.909 1 57.5 ? C6A NAD 601 B 1 HETATM 18 N N6A NAD . . . E 2 31.401 63.385 -30.721 1 59.89 ? N6A NAD 601 B 1 HETATM 19 N N1A NAD . . . E 2 30.326 65.438 -30.885 1 52.74 ? N1A NAD 601 B 1 HETATM 20 C C2A NAD . . . E 2 29.235 66.153 -31.09 1 53.83 ? C2A NAD 601 B 1 HETATM 21 N N3A NAD . . . E 2 28.059 65.583 -31.325 1 60.09 ? N3A NAD 601 B 1 HETATM 22 C C4A NAD . . . E 2 27.893 64.248 -31.363 1 64.3 ? C4A NAD 601 B 1 HETATM 23 O O3 NAD . . . E 2 24.015 58.245 -32.224 1 95.78 ? O3 NAD 601 B 1 HETATM 24 P PN NAD . . . E 2 23.091 57.031 -31.857 1 91.14 ? PN NAD 601 B 1 HETATM 25 O O1N NAD . . . E 2 21.72 57.539 -31.697 1 84.66 ? O1N NAD 601 B 1 HETATM 26 O O2N NAD . . . E 2 23.716 56.396 -30.702 1 91.57 ? O2N NAD 601 B 1 HETATM 27 O O5D NAD . . . E 2 23.244 56.151 -33.148 1 82 ? O5D NAD 601 B 1 HETATM 28 C C5D NAD . . . E 2 23.142 54.749 -33.019 1 77.91 ? C5D NAD 601 B 1 HETATM 29 C C4D NAD . . . E 2 22.142 54.188 -33.995 1 72.68 ? C4D NAD 601 B 1 HETATM 30 O O4D NAD . . . E 2 21.455 53.096 -33.425 1 76.85 ? O4D NAD 601 B 1 HETATM 31 C C3D NAD . . . E 2 21.072 55.143 -34.378 1 66.96 ? C3D NAD 601 B 1 HETATM 32 O O3D NAD . . . E 2 20.994 54.903 -35.758 1 64.77 ? O3D NAD 601 B 1 HETATM 33 C C2D NAD . . . E 2 19.854 54.642 -33.682 1 68.16 ? C2D NAD 601 B 1 HETATM 34 O O2D NAD . . . E 2 18.752 55.009 -34.48 1 68.53 ? O2D NAD 601 B 1 HETATM 35 C C1D NAD . . . E 2 20.069 53.151 -33.607 1 67.84 ? C1D NAD 601 B 1 HETATM 36 N N1N NAD . . . E 2 19.446 52.541 -32.44 1 68.72 ? N1N NAD 601 B 1 HETATM 37 C C2N NAD . . . E 2 18.362 51.801 -32.611 1 66.5 ? C2N NAD 601 B 1 HETATM 38 C C3N NAD . . . E 2 17.736 51.242 -31.513 1 66.26 ? C3N NAD 601 B 1 HETATM 39 C C7N NAD . . . E 2 16.517 50.423 -31.749 1 59.64 ? C7N NAD 601 B 1 HETATM 40 O O7N NAD . . . E 2 16.055 50.339 -32.857 1 57.62 ? O7N NAD 601 B 1 HETATM 41 N N7N NAD . . . E 2 15.959 49.783 -30.765 1 55.03 ? N7N NAD 601 B 1 HETATM 42 C C4N NAD . . . E 2 18.262 51.434 -30.234 1 68.18 ? C4N NAD 601 B 1 HETATM 43 C C5N NAD . . . E 2 19.39 52.206 -30.066 1 63.15 ? C5N NAD 601 B 1 HETATM 44 C C6N NAD . . . E 2 19.953 52.74 -31.206 1 67.41 ? C6N NAD 601 B 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 388 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 44 #