data_4Z9V # _model_server_result.job_id D3UtOuBETDE_xfwssw-DgQ _model_server_result.datetime_utc '2024-12-21 07:57:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4z9v # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":301}' # _entry.id 4Z9V # _exptl.entry_id 4Z9V _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 61.017 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'BICARBONATE ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4Z9V _cell.length_a 100.357 _cell.length_b 100.357 _cell.length_c 105.045 _cell.Z_PDB 48 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4Z9V _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details octameric _pdbx_struct_assembly.oligomeric_count 8 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 I N N ? 3 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 E SG CYS 18 E CYS 28 1_555 G SG CYS 18 G CYS 28 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf2 F SG CYS 18 F CYS 28 1_555 H SG CYS 18 H CYS 28 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? metalc ? metalc1 M O HOH . A HOH 408 1_555 L NA NA . H NA 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.486 ? metalc ? metalc2 N O HOH . B HOH 406 1_555 L NA NA . H NA 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.398 ? metalc ? metalc3 F O ASP 15 F ASP 25 1_555 K NA NA . F NA 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.155 ? metalc ? metalc4 F O CYS 18 F CYS 28 1_555 K NA NA . F NA 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.069 ? metalc ? metalc5 F O GLU 20 F GLU 30 1_555 K NA NA . F NA 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.163 ? metalc ? metalc6 S O HOH . G HOH 102 1_555 L NA NA . H NA 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.615 ? # _chem_comp.formula 'C H O3 -1' _chem_comp.formula_weight 61.017 _chem_comp.id BCT _chem_comp.mon_nstd_flag . _chem_comp.name 'BICARBONATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C O1 BCT doub 70 n n C O2 BCT sing 71 n n C O3 BCT sing 72 n n O3 HO3 BCT sing 73 n n # _atom_sites.entry_id 4Z9V _atom_sites.fract_transf_matrix[1][1] 0.009964 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009964 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00952 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 3 BCT A 1 301 2 BCT CAR . J 3 BCT B 1 301 3 BCT CAR . K 4 NA F 1 101 1 NA NA . L 4 NA H 1 101 2 NA NA . M 5 HOH A 1 401 42 HOH HOH . M 5 HOH A 2 402 38 HOH HOH . M 5 HOH A 3 403 8 HOH HOH . M 5 HOH A 4 404 10 HOH HOH . M 5 HOH A 5 405 9 HOH HOH . M 5 HOH A 6 406 40 HOH HOH . M 5 HOH A 7 407 47 HOH HOH . M 5 HOH A 8 408 1 HOH HOH . M 5 HOH A 9 409 35 HOH HOH . M 5 HOH A 10 410 6 HOH HOH . M 5 HOH A 11 411 5 HOH HOH . M 5 HOH A 12 412 18 HOH HOH . M 5 HOH A 13 413 3 HOH HOH . M 5 HOH A 14 414 39 HOH HOH . M 5 HOH A 15 415 53 HOH HOH . M 5 HOH A 16 416 7 HOH HOH . M 5 HOH A 17 417 13 HOH HOH . M 5 HOH A 18 418 14 HOH HOH . M 5 HOH A 19 419 52 HOH HOH . M 5 HOH A 20 420 27 HOH HOH . M 5 HOH A 21 421 36 HOH HOH . M 5 HOH A 22 422 49 HOH HOH . M 5 HOH A 23 423 37 HOH HOH . N 5 HOH B 1 401 51 HOH HOH . N 5 HOH B 2 402 12 HOH HOH . N 5 HOH B 3 403 19 HOH HOH . N 5 HOH B 4 404 43 HOH HOH . N 5 HOH B 5 405 16 HOH HOH . N 5 HOH B 6 406 20 HOH HOH . N 5 HOH B 7 407 17 HOH HOH . N 5 HOH B 8 408 29 HOH HOH . N 5 HOH B 9 409 22 HOH HOH . N 5 HOH B 10 410 45 HOH HOH . N 5 HOH B 11 411 54 HOH HOH . N 5 HOH B 12 412 24 HOH HOH . N 5 HOH B 13 413 41 HOH HOH . N 5 HOH B 14 414 4 HOH HOH . N 5 HOH B 15 415 50 HOH HOH . N 5 HOH B 16 416 28 HOH HOH . N 5 HOH B 17 417 21 HOH HOH . N 5 HOH B 18 418 34 HOH HOH . N 5 HOH B 19 419 30 HOH HOH . N 5 HOH B 20 420 44 HOH HOH . O 5 HOH C 1 101 31 HOH HOH . O 5 HOH C 2 102 57 HOH HOH . O 5 HOH C 3 103 56 HOH HOH . P 5 HOH D 1 101 11 HOH HOH . Q 5 HOH E 1 101 33 HOH HOH . R 5 HOH F 1 201 25 HOH HOH . S 5 HOH G 1 101 23 HOH HOH . S 5 HOH G 2 102 26 HOH HOH . S 5 HOH G 3 103 55 HOH HOH . S 5 HOH G 4 104 15 HOH HOH . T 5 HOH H 1 201 48 HOH HOH . T 5 HOH H 2 202 2 HOH HOH . T 5 HOH H 3 203 46 HOH HOH . T 5 HOH H 4 204 32 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C BCT . . . J 3 23.361 27.631 27.912 1 76.97 ? C BCT 301 B 1 HETATM 2 O O1 BCT . . . J 3 23.317 26.955 26.901 1 67.36 ? O1 BCT 301 B 1 HETATM 3 O O2 BCT . . . J 3 24.315 27.346 28.902 1 81.54 1 O2 BCT 301 B 1 HETATM 4 O O3 BCT . . . J 3 22.606 28.813 28.003 1 77.24 1 O3 BCT 301 B 1 # _model_server_stats.io_time_ms 54 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 296 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 4 #