data_4ZAD # _model_server_result.job_id 9zAJawQ73bOXl2lxavgApg _model_server_result.datetime_utc '2024-11-23 04:25:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4zad # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":601}' # _entry.id 4ZAD # _exptl.entry_id 4ZAD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 54.938 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MANGANESE (II) ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 91.07 _cell.angle_gamma 90 _cell.entry_id 4ZAD _cell.length_a 91.97 _cell.length_b 64.55 _cell.length_c 96.05 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4ZAD _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASN 174 A ASN 174 1_555 C MN MN . A MN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.124 ? metalc ? metalc2 A O TRP 175 A TRP 175 1_555 D K K . A K 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.099 ? metalc ? metalc3 A O VAL 229 A VAL 229 1_555 D K K . A K 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.04 ? metalc ? metalc4 A O SER 230 A SER 230 1_555 D K K . A K 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.127 ? metalc ? metalc5 A O MET 232 A MET 232 1_555 D K K . A K 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.71 ? metalc ? metalc6 A OE1 GLU 240 A GLU 240 1_555 C MN MN . A MN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? metalc ? metalc7 A OE1 GLU 240 A GLU 240 1_555 D K K . A K 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.109 ? metalc ? metalc8 C MN MN . A MN 601 1_555 E O2P 4LU . A 4LU 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.207 ? metalc ? metalc9 C MN MN . A MN 601 1_555 I O HOH . A HOH 713 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? metalc ? metalc10 C MN MN . A MN 601 1_555 I O HOH . A HOH 717 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.336 ? metalc ? metalc11 D K K . A K 602 1_555 E O5' 4LU . A 4LU 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.93 ? metalc ? metalc12 D K K . A K 602 1_555 E O2P 4LU . A 4LU 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.819 ? metalc ? metalc13 B ND2 ASN 174 B ASN 174 1_555 F MN MN . B MN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? metalc ? metalc14 B O TRP 175 B TRP 175 1_555 G K K . B K 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.306 ? metalc ? metalc15 B ND1 HIS 197 B HIS 197 1_555 F MN MN . B MN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.255 ? metalc ? metalc16 B O VAL 229 B VAL 229 1_555 G K K . B K 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.928 ? metalc ? metalc17 B O SER 230 B SER 230 1_555 G K K . B K 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.148 ? metalc ? metalc18 B O MET 232 B MET 232 1_555 G K K . B K 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.764 ? metalc ? metalc19 B OE2 GLU 240 B GLU 240 1_555 F MN MN . B MN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.117 ? metalc ? metalc20 B OE2 GLU 240 B GLU 240 1_555 G K K . B K 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.854 ? metalc ? metalc21 F MN MN . B MN 601 1_555 H O2P 4LU . B 4LU 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.184 ? metalc ? metalc22 F MN MN . B MN 601 1_555 J O HOH . B HOH 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.261 ? metalc ? metalc23 F MN MN . B MN 601 1_555 J O HOH . B HOH 710 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.159 ? metalc ? metalc24 G K K . B K 602 1_555 H O5' 4LU . B 4LU 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.077 ? metalc ? metalc25 G K K . B K 602 1_555 H O2P 4LU . B 4LU 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.883 ? metalc ? metalc26 G K K . B K 602 1_555 H O3P 4LU . B 4LU 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.369 ? metalc ? metalc27 G K K . B K 602 1_555 J O HOH . B HOH 710 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.343 ? # _chem_comp.formula 'Mn 2' _chem_comp.formula_weight 54.938 _chem_comp.id MN _chem_comp.mon_nstd_flag . _chem_comp.name 'MANGANESE (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4ZAD _atom_sites.fract_transf_matrix[1][1] 0.010873 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000203 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015492 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010413 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MN A 1 601 1 MN MN . D 3 K A 1 602 2 K K . E 4 4LU A 1 603 1 4LU FMQ . F 2 MN B 1 601 2 MN MN . G 3 K B 1 602 1 K K . H 4 4LU B 1 603 1 4LU FMQ . I 5 HOH A 1 701 71 HOH HOH . I 5 HOH A 2 702 58 HOH HOH . I 5 HOH A 3 703 34 HOH HOH . I 5 HOH A 4 704 183 HOH HOH . I 5 HOH A 5 705 27 HOH HOH . I 5 HOH A 6 706 34 HOH HOH . I 5 HOH A 7 707 174 HOH HOH . I 5 HOH A 8 708 8 HOH HOH . I 5 HOH A 9 709 78 HOH HOH . I 5 HOH A 10 710 1 HOH HOH . I 5 HOH A 11 711 128 HOH HOH . I 5 HOH A 12 712 108 HOH HOH . I 5 HOH A 13 713 182 HOH HOH . I 5 HOH A 14 714 25 HOH HOH . I 5 HOH A 15 715 9 HOH HOH . I 5 HOH A 16 716 10 HOH HOH . I 5 HOH A 17 717 17 HOH HOH . I 5 HOH A 18 718 20 HOH HOH . I 5 HOH A 19 719 5 HOH HOH . I 5 HOH A 20 720 15 HOH HOH . I 5 HOH A 21 721 80 HOH HOH . I 5 HOH A 22 722 2 HOH HOH . I 5 HOH A 23 723 10 HOH HOH . I 5 HOH A 24 724 1 HOH HOH . I 5 HOH A 25 725 84 HOH HOH . I 5 HOH A 26 726 28 HOH HOH . I 5 HOH A 27 727 51 HOH HOH . I 5 HOH A 28 728 107 HOH HOH . I 5 HOH A 29 729 67 HOH HOH . I 5 HOH A 30 730 13 HOH HOH . I 5 HOH A 31 731 70 HOH HOH . I 5 HOH A 32 732 6 HOH HOH . I 5 HOH A 33 733 47 HOH HOH . I 5 HOH A 34 734 1 HOH HOH . I 5 HOH A 35 735 19 HOH HOH . I 5 HOH A 36 736 50 HOH HOH . I 5 HOH A 37 737 55 HOH HOH . I 5 HOH A 38 738 7 HOH HOH . I 5 HOH A 39 739 110 HOH HOH . I 5 HOH A 40 740 81 HOH HOH . I 5 HOH A 41 741 8 HOH HOH . I 5 HOH A 42 742 9 HOH HOH . I 5 HOH A 43 743 33 HOH HOH . I 5 HOH A 44 744 20 HOH HOH . I 5 HOH A 45 745 178 HOH HOH . I 5 HOH A 46 746 145 HOH HOH . I 5 HOH A 47 747 181 HOH HOH . I 5 HOH A 48 748 127 HOH HOH . I 5 HOH A 49 749 90 HOH HOH . I 5 HOH A 50 750 49 HOH HOH . I 5 HOH A 51 751 75 HOH HOH . I 5 HOH A 52 752 7 HOH HOH . I 5 HOH A 53 753 40 HOH HOH . I 5 HOH A 54 754 82 HOH HOH . I 5 HOH A 55 755 173 HOH HOH . I 5 HOH A 56 756 150 HOH HOH . I 5 HOH A 57 757 103 HOH HOH . I 5 HOH A 58 758 93 HOH HOH . J 5 HOH B 1 701 181 HOH HOH . J 5 HOH B 2 702 183 HOH HOH . J 5 HOH B 3 703 4 HOH HOH . J 5 HOH B 4 704 4 HOH HOH . J 5 HOH B 5 705 19 HOH HOH . J 5 HOH B 6 706 180 HOH HOH . J 5 HOH B 7 707 31 HOH HOH . J 5 HOH B 8 708 22 HOH HOH . J 5 HOH B 9 709 60 HOH HOH . J 5 HOH B 10 710 179 HOH HOH . J 5 HOH B 11 711 52 HOH HOH . J 5 HOH B 12 712 75 HOH HOH . J 5 HOH B 13 713 39 HOH HOH . J 5 HOH B 14 714 106 HOH HOH . J 5 HOH B 15 715 140 HOH HOH . J 5 HOH B 16 716 143 HOH HOH . J 5 HOH B 17 717 14 HOH HOH . J 5 HOH B 18 718 43 HOH HOH . J 5 HOH B 19 719 45 HOH HOH . J 5 HOH B 20 720 26 HOH HOH . J 5 HOH B 21 721 89 HOH HOH . J 5 HOH B 22 722 135 HOH HOH . J 5 HOH B 23 723 41 HOH HOH . J 5 HOH B 24 724 17 HOH HOH . J 5 HOH B 25 725 194 HOH HOH . J 5 HOH B 26 726 72 HOH HOH . J 5 HOH B 27 727 59 HOH HOH . J 5 HOH B 28 728 24 HOH HOH . J 5 HOH B 29 729 11 HOH HOH . J 5 HOH B 30 730 46 HOH HOH . J 5 HOH B 31 731 100 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MN _atom_site.label_atom_id MN _atom_site.label_comp_id MN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 2 _atom_site.Cartn_x 105.232 _atom_site.Cartn_y -73.404 _atom_site.Cartn_z 94.837 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 37.01 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MN _atom_site.auth_comp_id MN _atom_site.auth_seq_id 601 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 60 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 301 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 1 #