data_4ZAE # _model_server_result.job_id wPXw6EZR8CGzGzut18VMSQ _model_server_result.datetime_utc '2025-08-31 08:40:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4zae # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":302}' # _entry.id 4ZAE # _exptl.entry_id 4ZAE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4ZAE _cell.length_a 99.452 _cell.length_b 99.452 _cell.length_c 94.737 _cell.Z_PDB 9 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4ZAE _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 26 A CYS 42 1_555 A SG CYS 42 A CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? disulf ? disulf2 A SG CYS 109 A CYS 122 1_555 B SG CYS 49 B CYS 132 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.081 ? disulf ? disulf3 A SG CYS 156 A CYS 168 1_555 A SG CYS 170 A CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf4 A SG CYS 181 A CYS 191 1_555 A SG CYS 209 A CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf5 B SG CYS 5 B CYS 88 1_555 B SG CYS 16 B CYS 99 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? disulf ? disulf6 B SG CYS 12 B CYS 95 1_555 B SG CYS 26 B CYS 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf7 B SG CYS 28 B CYS 111 1_555 B SG CYS 41 B CYS 124 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.1 ? metalc ? metalc1 A OE1 GLU 55 A GLU 70 1_555 D NA NA . A NA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.229 ? metalc ? metalc2 A O ASN 57 A ASN 72 1_555 D NA NA . A NA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.378 ? metalc ? metalc3 A O GLU 60 A GLU 75 1_555 D NA NA . A NA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.237 ? metalc ? metalc4 A OE1 GLU 62 A GLU 77 1_555 D NA NA . A NA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.432 ? metalc ? metalc5 A OE2 GLU 65 A GLU 80 1_555 D NA NA . A NA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.415 ? metalc ? metalc6 D NA NA . A NA 302 1_555 F O HOH . A HOH 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.529 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4ZAE _atom_sites.fract_transf_matrix[1][1] 0.010055 _atom_sites.fract_transf_matrix[1][2] 0.005805 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011611 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010556 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 4M1 A 1 301 299 4M1 UNL . D 4 NA A 1 302 300 NA NA . E 5 NHE A 1 303 301 NHE NHE . F 6 HOH A 1 401 451 HOH HOH . F 6 HOH A 2 402 574 HOH HOH . F 6 HOH A 3 403 450 HOH HOH . F 6 HOH A 4 404 443 HOH HOH . F 6 HOH A 5 405 482 HOH HOH . F 6 HOH A 6 406 431 HOH HOH . F 6 HOH A 7 407 513 HOH HOH . F 6 HOH A 8 408 514 HOH HOH . F 6 HOH A 9 409 538 HOH HOH . F 6 HOH A 10 410 425 HOH HOH . F 6 HOH A 11 411 547 HOH HOH . F 6 HOH A 12 412 576 HOH HOH . F 6 HOH A 13 413 404 HOH HOH . F 6 HOH A 14 414 454 HOH HOH . F 6 HOH A 15 415 424 HOH HOH . F 6 HOH A 16 416 457 HOH HOH . F 6 HOH A 17 417 406 HOH HOH . F 6 HOH A 18 418 406 HOH HOH . F 6 HOH A 19 419 566 HOH HOH . F 6 HOH A 20 420 541 HOH HOH . F 6 HOH A 21 421 471 HOH HOH . F 6 HOH A 22 422 472 HOH HOH . F 6 HOH A 23 423 577 HOH HOH . F 6 HOH A 24 424 461 HOH HOH . F 6 HOH A 25 425 484 HOH HOH . F 6 HOH A 26 426 416 HOH HOH . F 6 HOH A 27 427 416 HOH HOH . F 6 HOH A 28 428 549 HOH HOH . F 6 HOH A 29 429 421 HOH HOH . F 6 HOH A 30 430 579 HOH HOH . F 6 HOH A 31 431 466 HOH HOH . F 6 HOH A 32 432 480 HOH HOH . F 6 HOH A 33 433 447 HOH HOH . F 6 HOH A 34 434 528 HOH HOH . F 6 HOH A 35 435 426 HOH HOH . F 6 HOH A 36 436 403 HOH HOH . F 6 HOH A 37 437 409 HOH HOH . F 6 HOH A 38 438 432 HOH HOH . F 6 HOH A 39 439 560 HOH HOH . F 6 HOH A 40 440 520 HOH HOH . F 6 HOH A 41 441 542 HOH HOH . F 6 HOH A 42 442 510 HOH HOH . F 6 HOH A 43 443 531 HOH HOH . F 6 HOH A 44 444 460 HOH HOH . F 6 HOH A 45 445 494 HOH HOH . F 6 HOH A 46 446 515 HOH HOH . F 6 HOH A 47 447 497 HOH HOH . F 6 HOH A 48 448 526 HOH HOH . F 6 HOH A 49 449 581 HOH HOH . F 6 HOH A 50 450 407 HOH HOH . F 6 HOH A 51 451 453 HOH HOH . F 6 HOH A 52 452 444 HOH HOH . F 6 HOH A 53 453 561 HOH HOH . F 6 HOH A 54 454 562 HOH HOH . F 6 HOH A 55 455 584 HOH HOH . F 6 HOH A 56 456 495 HOH HOH . F 6 HOH A 57 457 570 HOH HOH . F 6 HOH A 58 458 445 HOH HOH . F 6 HOH A 59 459 408 HOH HOH . F 6 HOH A 60 460 429 HOH HOH . F 6 HOH A 61 461 411 HOH HOH . F 6 HOH A 62 462 417 HOH HOH . F 6 HOH A 63 463 415 HOH HOH . F 6 HOH A 64 464 430 HOH HOH . F 6 HOH A 65 465 578 HOH HOH . F 6 HOH A 66 466 446 HOH HOH . F 6 HOH A 67 467 505 HOH HOH . F 6 HOH A 68 468 468 HOH HOH . F 6 HOH A 69 469 533 HOH HOH . F 6 HOH A 70 470 540 HOH HOH . F 6 HOH A 71 471 423 HOH HOH . F 6 HOH A 72 472 476 HOH HOH . F 6 HOH A 73 473 441 HOH HOH . F 6 HOH A 74 474 491 HOH HOH . F 6 HOH A 75 475 583 HOH HOH . F 6 HOH A 76 476 575 HOH HOH . F 6 HOH A 77 477 536 HOH HOH . F 6 HOH A 78 478 537 HOH HOH . F 6 HOH A 79 479 488 HOH HOH . F 6 HOH A 80 480 534 HOH HOH . F 6 HOH A 81 481 412 HOH HOH . F 6 HOH A 82 482 439 HOH HOH . F 6 HOH A 83 483 470 HOH HOH . F 6 HOH A 84 484 410 HOH HOH . F 6 HOH A 85 485 434 HOH HOH . F 6 HOH A 86 486 422 HOH HOH . F 6 HOH A 87 487 449 HOH HOH . F 6 HOH A 88 488 496 HOH HOH . F 6 HOH A 89 489 507 HOH HOH . F 6 HOH A 90 490 483 HOH HOH . F 6 HOH A 91 491 535 HOH HOH . F 6 HOH A 92 492 402 HOH HOH . F 6 HOH A 93 493 493 HOH HOH . F 6 HOH A 94 494 419 HOH HOH . F 6 HOH A 95 495 405 HOH HOH . F 6 HOH A 96 496 503 HOH HOH . F 6 HOH A 97 497 500 HOH HOH . F 6 HOH A 98 498 481 HOH HOH . F 6 HOH A 99 499 539 HOH HOH . F 6 HOH A 100 500 469 HOH HOH . F 6 HOH A 101 501 439 HOH HOH . F 6 HOH A 102 502 532 HOH HOH . F 6 HOH A 103 503 428 HOH HOH . F 6 HOH A 104 504 529 HOH HOH . F 6 HOH A 105 505 433 HOH HOH . F 6 HOH A 106 506 401 HOH HOH . F 6 HOH A 107 507 485 HOH HOH . F 6 HOH A 108 508 448 HOH HOH . F 6 HOH A 109 509 413 HOH HOH . F 6 HOH A 110 510 442 HOH HOH . F 6 HOH A 111 511 551 HOH HOH . F 6 HOH A 112 512 435 HOH HOH . F 6 HOH A 113 513 568 HOH HOH . F 6 HOH A 114 514 456 HOH HOH . F 6 HOH A 115 515 543 HOH HOH . F 6 HOH A 116 516 459 HOH HOH . F 6 HOH A 117 517 569 HOH HOH . F 6 HOH A 118 518 418 HOH HOH . F 6 HOH A 119 519 467 HOH HOH . F 6 HOH A 120 520 508 HOH HOH . F 6 HOH A 121 521 465 HOH HOH . F 6 HOH A 122 522 499 HOH HOH . F 6 HOH A 123 523 437 HOH HOH . F 6 HOH A 124 524 427 HOH HOH . F 6 HOH A 125 525 477 HOH HOH . F 6 HOH A 126 526 407 HOH HOH . F 6 HOH A 127 527 440 HOH HOH . F 6 HOH A 128 528 530 HOH HOH . F 6 HOH A 129 529 420 HOH HOH . F 6 HOH A 130 530 516 HOH HOH . F 6 HOH A 131 531 553 HOH HOH . F 6 HOH A 132 532 475 HOH HOH . F 6 HOH A 133 533 527 HOH HOH . F 6 HOH A 134 534 473 HOH HOH . F 6 HOH A 135 535 582 HOH HOH . F 6 HOH A 136 536 580 HOH HOH . F 6 HOH A 137 537 518 HOH HOH . F 6 HOH A 138 538 509 HOH HOH . F 6 HOH A 139 539 506 HOH HOH . F 6 HOH A 140 540 544 HOH HOH . F 6 HOH A 141 541 438 HOH HOH . F 6 HOH A 142 542 512 HOH HOH . F 6 HOH A 143 543 490 HOH HOH . F 6 HOH A 144 544 486 HOH HOH . F 6 HOH A 145 545 517 HOH HOH . F 6 HOH A 146 546 474 HOH HOH . F 6 HOH A 147 547 556 HOH HOH . F 6 HOH A 148 548 519 HOH HOH . F 6 HOH A 149 549 452 HOH HOH . F 6 HOH A 150 550 443 HOH HOH . F 6 HOH A 151 551 504 HOH HOH . F 6 HOH A 152 552 511 HOH HOH . F 6 HOH A 153 553 521 HOH HOH . F 6 HOH A 154 554 525 HOH HOH . F 6 HOH A 155 555 564 HOH HOH . F 6 HOH A 156 556 463 HOH HOH . F 6 HOH A 157 557 545 HOH HOH . F 6 HOH A 158 558 462 HOH HOH . F 6 HOH A 159 559 571 HOH HOH . F 6 HOH A 160 560 573 HOH HOH . F 6 HOH A 161 561 554 HOH HOH . F 6 HOH A 162 562 585 HOH HOH . F 6 HOH A 163 563 555 HOH HOH . F 6 HOH A 164 564 524 HOH HOH . F 6 HOH A 165 565 498 HOH HOH . F 6 HOH A 166 566 586 HOH HOH . F 6 HOH A 167 567 489 HOH HOH . F 6 HOH A 168 568 492 HOH HOH . F 6 HOH A 169 569 558 HOH HOH . F 6 HOH A 170 570 502 HOH HOH . F 6 HOH A 171 571 559 HOH HOH . F 6 HOH A 172 572 565 HOH HOH . F 6 HOH A 173 573 523 HOH HOH . F 6 HOH A 174 574 459 HOH HOH . F 6 HOH A 175 575 501 HOH HOH . F 6 HOH A 176 576 522 HOH HOH . F 6 HOH A 177 577 455 HOH HOH . F 6 HOH A 178 578 546 HOH HOH . F 6 HOH A 179 579 464 HOH HOH . F 6 HOH A 180 580 437 HOH HOH . F 6 HOH A 181 581 552 HOH HOH . F 6 HOH A 182 582 567 HOH HOH . F 6 HOH A 183 583 487 HOH HOH . F 6 HOH A 184 584 550 HOH HOH . F 6 HOH A 185 585 548 HOH HOH . F 6 HOH A 186 586 572 HOH HOH . F 6 HOH A 187 587 449 HOH HOH . F 6 HOH A 188 588 458 HOH HOH . G 6 HOH B 1 201 414 HOH HOH . G 6 HOH B 2 202 431 HOH HOH . G 6 HOH B 3 203 451 HOH HOH . G 6 HOH B 4 204 409 HOH HOH . G 6 HOH B 5 205 419 HOH HOH . G 6 HOH B 6 206 471 HOH HOH . G 6 HOH B 7 207 422 HOH HOH . G 6 HOH B 8 208 402 HOH HOH . G 6 HOH B 9 209 411 HOH HOH . G 6 HOH B 10 210 428 HOH HOH . G 6 HOH B 11 211 465 HOH HOH . G 6 HOH B 12 212 405 HOH HOH . G 6 HOH B 13 213 457 HOH HOH . G 6 HOH B 14 214 408 HOH HOH . G 6 HOH B 15 215 468 HOH HOH . G 6 HOH B 16 216 403 HOH HOH . G 6 HOH B 17 217 440 HOH HOH . G 6 HOH B 18 218 463 HOH HOH . G 6 HOH B 19 219 478 HOH HOH . G 6 HOH B 20 220 455 HOH HOH . G 6 HOH B 21 221 467 HOH HOH . G 6 HOH B 22 222 458 HOH HOH . G 6 HOH B 23 223 436 HOH HOH . G 6 HOH B 24 224 472 HOH HOH . G 6 HOH B 25 225 412 HOH HOH . G 6 HOH B 26 226 436 HOH HOH . G 6 HOH B 27 227 410 HOH HOH . G 6 HOH B 28 228 432 HOH HOH . G 6 HOH B 29 229 454 HOH HOH . G 6 HOH B 30 230 462 HOH HOH . G 6 HOH B 31 231 434 HOH HOH . G 6 HOH B 32 232 474 HOH HOH . G 6 HOH B 33 233 469 HOH HOH . G 6 HOH B 34 234 435 HOH HOH . G 6 HOH B 35 235 427 HOH HOH . G 6 HOH B 36 236 401 HOH HOH . G 6 HOH B 37 237 442 HOH HOH . G 6 HOH B 38 238 417 HOH HOH . G 6 HOH B 39 239 433 HOH HOH . G 6 HOH B 40 240 473 HOH HOH . G 6 HOH B 41 241 421 HOH HOH . G 6 HOH B 42 242 423 HOH HOH . G 6 HOH B 43 243 415 HOH HOH . G 6 HOH B 44 244 425 HOH HOH . G 6 HOH B 45 245 424 HOH HOH . G 6 HOH B 46 246 441 HOH HOH . G 6 HOH B 47 247 447 HOH HOH . G 6 HOH B 48 248 452 HOH HOH . G 6 HOH B 49 249 414 HOH HOH . G 6 HOH B 50 250 430 HOH HOH . G 6 HOH B 51 251 418 HOH HOH . G 6 HOH B 52 252 438 HOH HOH . G 6 HOH B 53 253 420 HOH HOH . G 6 HOH B 54 254 404 HOH HOH . G 6 HOH B 55 255 466 HOH HOH . G 6 HOH B 56 256 470 HOH HOH . G 6 HOH B 57 257 563 HOH HOH . G 6 HOH B 58 258 444 HOH HOH . G 6 HOH B 59 259 456 HOH HOH . G 6 HOH B 60 260 461 HOH HOH . G 6 HOH B 61 261 445 HOH HOH . G 6 HOH B 62 262 450 HOH HOH . G 6 HOH B 63 263 453 HOH HOH . G 6 HOH B 64 264 479 HOH HOH . G 6 HOH B 65 265 460 HOH HOH . G 6 HOH B 66 266 557 HOH HOH . G 6 HOH B 67 267 426 HOH HOH . G 6 HOH B 68 268 448 HOH HOH . G 6 HOH B 69 269 429 HOH HOH . G 6 HOH B 70 270 464 HOH HOH . G 6 HOH B 71 271 413 HOH HOH . G 6 HOH B 72 272 446 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 4 _atom_site.Cartn_x 4.773 _atom_site.Cartn_y -19.642 _atom_site.Cartn_z -13.313 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 25.86 _atom_site.pdbx_formal_charge 1 _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 302 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 65 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 616 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #