data_4ZAF # _model_server_result.job_id FAV7YHPRVla8nWZ2SYNwhQ _model_server_result.datetime_utc '2024-11-12 21:45:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4zaf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":302}' # _entry.id 4ZAF # _exptl.entry_id 4ZAF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 456.344 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN MONONUCLEOTIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4ZAF _cell.length_a 141.9 _cell.length_b 141.9 _cell.length_c 141.9 _cell.Z_PDB 48 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4ZAF _symmetry.cell_setting ? _symmetry.Int_Tables_number 196 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'F 2 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dodecameric _pdbx_struct_assembly.oligomeric_count 12 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6,7,8,9,10,11,12 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 4 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 5 'crystal symmetry operation' 5_555 z,x,y 0 0 1 1 0 0 0 1 0 0 0 0 6 'crystal symmetry operation' 6_555 z,-x,-y 0 0 1 -1 0 0 0 -1 0 0 0 0 7 'crystal symmetry operation' 7_555 -z,-x,y 0 0 -1 -1 0 0 0 1 0 0 0 0 8 'crystal symmetry operation' 8_555 -z,x,-y 0 0 -1 1 0 0 0 -1 0 0 0 0 9 'crystal symmetry operation' 9_555 y,z,x 0 1 0 0 0 1 1 0 0 0 0 0 10 'crystal symmetry operation' 10_555 -y,z,-x 0 -1 0 0 0 1 -1 0 0 0 0 0 11 'crystal symmetry operation' 11_555 y,-z,-x 0 1 0 0 0 -1 -1 0 0 0 0 0 12 'crystal symmetry operation' 12_555 -y,-z,x 0 -1 0 0 0 -1 1 0 0 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 D S SCN . A SCN 303 1_555 E S SCN . A SCN 304 9_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? metalc ? metalc1 H K K . A K 307 1_555 I O HOH . A HOH 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.697 ? metalc ? metalc2 H K K . A K 307 1_555 I O HOH . A HOH 469 3_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.482 ? metalc ? metalc3 H K K . A K 307 1_555 I O HOH . A HOH 539 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.381 ? # _chem_comp.formula 'C17 H21 N4 O9 P' _chem_comp.formula_weight 456.344 _chem_comp.id FMN _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN MONONUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'RIBOFLAVIN MONOPHOSPHATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 FMN sing 103 n n N1 C10 FMN doub 104 n n C2 O2 FMN doub 105 n n C2 N3 FMN sing 106 n n N3 C4 FMN sing 107 n n N3 HN3 FMN sing 108 n n C4 O4 FMN doub 109 n n C4 C4A FMN sing 110 n n C4A N5 FMN doub 111 n n C4A C10 FMN sing 112 n n N5 C5A FMN sing 113 n n C5A C6 FMN doub 114 n y C5A C9A FMN sing 115 n y C6 C7 FMN sing 116 n y C6 H6 FMN sing 117 n n C7 C7M FMN sing 118 n n C7 C8 FMN doub 119 n y C7M HM71 FMN sing 120 n n C7M HM72 FMN sing 121 n n C7M HM73 FMN sing 122 n n C8 C8M FMN sing 123 n n C8 C9 FMN sing 124 n y C8M HM81 FMN sing 125 n n C8M HM82 FMN sing 126 n n C8M HM83 FMN sing 127 n n C9 C9A FMN doub 128 n y C9 H9 FMN sing 129 n n C9A N10 FMN sing 130 n n N10 C10 FMN sing 131 n n N10 C1' FMN sing 132 n n C1' C2' FMN sing 133 n n C1' "H1'1" FMN sing 134 n n C1' "H1'2" FMN sing 135 n n C2' O2' FMN sing 136 n n C2' C3' FMN sing 137 n n C2' H2' FMN sing 138 n n O2' HO2' FMN sing 139 n n C3' O3' FMN sing 140 n n C3' C4' FMN sing 141 n n C3' H3' FMN sing 142 n n O3' HO3' FMN sing 143 n n C4' O4' FMN sing 144 n n C4' C5' FMN sing 145 n n C4' H4' FMN sing 146 n n O4' HO4' FMN sing 147 n n C5' O5' FMN sing 148 n n C5' "H5'1" FMN sing 149 n n C5' "H5'2" FMN sing 150 n n O5' P FMN sing 151 n n P O1P FMN doub 152 n n P O2P FMN sing 153 n n P O3P FMN sing 154 n n O2P HOP2 FMN sing 155 n n O3P HOP3 FMN sing 156 n n # _atom_sites.entry_id 4ZAF _atom_sites.fract_transf_matrix[1][1] 0.007047 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007047 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007047 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 4LR A 1 301 1 4LR DMA . C 3 FMN A 1 302 1 FMN FMN . D 4 SCN A 1 303 1 SCN SCN . E 4 SCN A 1 304 2 SCN SCN . F 4 SCN A 1 305 4 SCN SCN . G 4 SCN A 1 306 5 SCN SCN . H 5 K A 1 307 3 K K . I 6 HOH A 1 401 31 HOH HOH . I 6 HOH A 2 402 59 HOH HOH . I 6 HOH A 3 403 89 HOH HOH . I 6 HOH A 4 404 123 HOH HOH . I 6 HOH A 5 405 82 HOH HOH . I 6 HOH A 6 406 35 HOH HOH . I 6 HOH A 7 407 103 HOH HOH . I 6 HOH A 8 408 1 HOH HOH . I 6 HOH A 9 409 125 HOH HOH . I 6 HOH A 10 410 112 HOH HOH . I 6 HOH A 11 411 74 HOH HOH . I 6 HOH A 12 412 81 HOH HOH . I 6 HOH A 13 413 76 HOH HOH . I 6 HOH A 14 414 63 HOH HOH . I 6 HOH A 15 415 104 HOH HOH . I 6 HOH A 16 416 118 HOH HOH . I 6 HOH A 17 417 141 HOH HOH . I 6 HOH A 18 418 113 HOH HOH . I 6 HOH A 19 419 26 HOH HOH . I 6 HOH A 20 420 20 HOH HOH . I 6 HOH A 21 421 69 HOH HOH . I 6 HOH A 22 422 10 HOH HOH . I 6 HOH A 23 423 121 HOH HOH . I 6 HOH A 24 424 50 HOH HOH . I 6 HOH A 25 425 17 HOH HOH . I 6 HOH A 26 426 25 HOH HOH . I 6 HOH A 27 427 132 HOH HOH . I 6 HOH A 28 428 78 HOH HOH . I 6 HOH A 29 429 29 HOH HOH . I 6 HOH A 30 430 116 HOH HOH . I 6 HOH A 31 431 40 HOH HOH . I 6 HOH A 32 432 101 HOH HOH . I 6 HOH A 33 433 128 HOH HOH . I 6 HOH A 34 434 79 HOH HOH . I 6 HOH A 35 435 11 HOH HOH . I 6 HOH A 36 436 6 HOH HOH . I 6 HOH A 37 437 51 HOH HOH . I 6 HOH A 38 438 142 HOH HOH . I 6 HOH A 39 439 120 HOH HOH . I 6 HOH A 40 440 4 HOH HOH . I 6 HOH A 41 441 108 HOH HOH . I 6 HOH A 42 442 126 HOH HOH . I 6 HOH A 43 443 13 HOH HOH . I 6 HOH A 44 444 91 HOH HOH . I 6 HOH A 45 445 124 HOH HOH . I 6 HOH A 46 446 62 HOH HOH . I 6 HOH A 47 447 65 HOH HOH . I 6 HOH A 48 448 109 HOH HOH . I 6 HOH A 49 449 57 HOH HOH . I 6 HOH A 50 450 127 HOH HOH . I 6 HOH A 51 451 60 HOH HOH . I 6 HOH A 52 452 23 HOH HOH . I 6 HOH A 53 453 30 HOH HOH . I 6 HOH A 54 454 53 HOH HOH . I 6 HOH A 55 455 107 HOH HOH . I 6 HOH A 56 456 47 HOH HOH . I 6 HOH A 57 457 22 HOH HOH . I 6 HOH A 58 458 24 HOH HOH . I 6 HOH A 59 459 52 HOH HOH . I 6 HOH A 60 460 119 HOH HOH . I 6 HOH A 61 461 5 HOH HOH . I 6 HOH A 62 462 56 HOH HOH . I 6 HOH A 63 463 15 HOH HOH . I 6 HOH A 64 464 37 HOH HOH . I 6 HOH A 65 465 9 HOH HOH . I 6 HOH A 66 466 32 HOH HOH . I 6 HOH A 67 467 27 HOH HOH . I 6 HOH A 68 468 7 HOH HOH . I 6 HOH A 69 469 19 HOH HOH . I 6 HOH A 70 470 44 HOH HOH . I 6 HOH A 71 471 42 HOH HOH . I 6 HOH A 72 472 36 HOH HOH . I 6 HOH A 73 473 90 HOH HOH . I 6 HOH A 74 474 133 HOH HOH . I 6 HOH A 75 475 38 HOH HOH . I 6 HOH A 76 476 33 HOH HOH . I 6 HOH A 77 477 46 HOH HOH . I 6 HOH A 78 478 139 HOH HOH . I 6 HOH A 79 479 96 HOH HOH . I 6 HOH A 80 480 3 HOH HOH . I 6 HOH A 81 481 77 HOH HOH . I 6 HOH A 82 482 45 HOH HOH . I 6 HOH A 83 483 8 HOH HOH . I 6 HOH A 84 484 34 HOH HOH . I 6 HOH A 85 485 88 HOH HOH . I 6 HOH A 86 486 54 HOH HOH . I 6 HOH A 87 487 43 HOH HOH . I 6 HOH A 88 488 28 HOH HOH . I 6 HOH A 89 489 39 HOH HOH . I 6 HOH A 90 490 99 HOH HOH . I 6 HOH A 91 491 75 HOH HOH . I 6 HOH A 92 492 41 HOH HOH . I 6 HOH A 93 493 115 HOH HOH . I 6 HOH A 94 494 129 HOH HOH . I 6 HOH A 95 495 64 HOH HOH . I 6 HOH A 96 496 85 HOH HOH . I 6 HOH A 97 497 2 HOH HOH . I 6 HOH A 98 498 94 HOH HOH . I 6 HOH A 99 499 16 HOH HOH . I 6 HOH A 100 500 55 HOH HOH . I 6 HOH A 101 501 80 HOH HOH . I 6 HOH A 102 502 58 HOH HOH . I 6 HOH A 103 503 18 HOH HOH . I 6 HOH A 104 504 145 HOH HOH . I 6 HOH A 105 505 111 HOH HOH . I 6 HOH A 106 506 72 HOH HOH . I 6 HOH A 107 507 95 HOH HOH . I 6 HOH A 108 508 86 HOH HOH . I 6 HOH A 109 509 106 HOH HOH . I 6 HOH A 110 510 83 HOH HOH . I 6 HOH A 111 511 137 HOH HOH . I 6 HOH A 112 512 48 HOH HOH . I 6 HOH A 113 513 131 HOH HOH . I 6 HOH A 114 514 138 HOH HOH . I 6 HOH A 115 515 114 HOH HOH . I 6 HOH A 116 516 122 HOH HOH . I 6 HOH A 117 517 100 HOH HOH . I 6 HOH A 118 518 87 HOH HOH . I 6 HOH A 119 519 134 HOH HOH . I 6 HOH A 120 520 61 HOH HOH . I 6 HOH A 121 521 67 HOH HOH . I 6 HOH A 122 522 144 HOH HOH . I 6 HOH A 123 523 66 HOH HOH . I 6 HOH A 124 524 73 HOH HOH . I 6 HOH A 125 525 14 HOH HOH . I 6 HOH A 126 526 130 HOH HOH . I 6 HOH A 127 527 117 HOH HOH . I 6 HOH A 128 528 84 HOH HOH . I 6 HOH A 129 529 49 HOH HOH . I 6 HOH A 130 530 135 HOH HOH . I 6 HOH A 131 531 92 HOH HOH . I 6 HOH A 132 532 140 HOH HOH . I 6 HOH A 133 533 70 HOH HOH . I 6 HOH A 134 534 136 HOH HOH . I 6 HOH A 135 535 110 HOH HOH . I 6 HOH A 136 536 93 HOH HOH . I 6 HOH A 137 537 105 HOH HOH . I 6 HOH A 138 538 97 HOH HOH . I 6 HOH A 139 539 143 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 FMN . . . C 3 -6.466 27.216 11.678 1 18.16 ? N1 FMN 302 A 1 HETATM 2 C C2 FMN . . . C 3 -5.855 26.887 10.465 1 19.07 ? C2 FMN 302 A 1 HETATM 3 O O2 FMN . . . C 3 -5.929 25.677 10.06 1 21.95 ? O2 FMN 302 A 1 HETATM 4 N N3 FMN . . . C 3 -5.188 27.789 9.717 1 20.42 ? N3 FMN 302 A 1 HETATM 5 C C4 FMN . . . C 3 -5.094 29.118 10.128 1 20.73 ? C4 FMN 302 A 1 HETATM 6 O O4 FMN . . . C 3 -4.513 29.957 9.412 1 19.93 ? O4 FMN 302 A 1 HETATM 7 C C4A FMN . . . C 3 -5.749 29.482 11.321 1 18.48 ? C4A FMN 302 A 1 HETATM 8 N N5 FMN . . . C 3 -5.679 30.817 11.706 1 19.89 ? N5 FMN 302 A 1 HETATM 9 C C5A FMN . . . C 3 -6.465 31.131 12.783 1 19.01 ? C5A FMN 302 A 1 HETATM 10 C C6 FMN . . . C 3 -6.508 32.486 13.144 1 20.83 ? C6 FMN 302 A 1 HETATM 11 C C7 FMN . . . C 3 -7.268 32.888 14.238 1 21.54 ? C7 FMN 302 A 1 HETATM 12 C C7M FMN . . . C 3 -7.28 34.311 14.614 1 23.55 ? C7M FMN 302 A 1 HETATM 13 C C8 FMN . . . C 3 -7.991 31.978 14.953 1 19.28 ? C8 FMN 302 A 1 HETATM 14 C C8M FMN . . . C 3 -8.764 32.375 16.096 1 25.46 ? C8M FMN 302 A 1 HETATM 15 C C9 FMN . . . C 3 -7.92 30.576 14.648 1 19.45 ? C9 FMN 302 A 1 HETATM 16 C C9A FMN . . . C 3 -7.149 30.162 13.549 1 17.35 ? C9A FMN 302 A 1 HETATM 17 N N10 FMN . . . C 3 -7.028 28.846 13.199 1 18.71 ? N10 FMN 302 A 1 HETATM 18 C C10 FMN . . . C 3 -6.426 28.538 12.103 1 18.43 ? C10 FMN 302 A 1 HETATM 19 C C1' FMN . . . C 3 -7.66 27.805 14.055 1 19.58 ? C1' FMN 302 A 1 HETATM 20 C C2' FMN . . . C 3 -9.016 27.267 13.899 1 20.16 ? C2' FMN 302 A 1 HETATM 21 O O2' FMN . . . C 3 -9.869 28.348 13.749 1 18.7 ? O2' FMN 302 A 1 HETATM 22 C C3' FMN . . . C 3 -9.31 26.078 14.716 1 21.11 ? C3' FMN 302 A 1 HETATM 23 O O3' FMN . . . C 3 -8.449 24.923 14.543 1 19.33 ? O3' FMN 302 A 1 HETATM 24 C C4' FMN . . . C 3 -10.754 25.719 14.514 1 20.38 ? C4' FMN 302 A 1 HETATM 25 O O4' FMN . . . C 3 -11.033 24.52 15.323 1 19.96 ? O4' FMN 302 A 1 HETATM 26 C C5' FMN . . . C 3 -11.198 25.562 13.093 1 19.57 ? C5' FMN 302 A 1 HETATM 27 O O5' FMN . . . C 3 -12.597 25.221 13.176 1 19.14 ? O5' FMN 302 A 1 HETATM 28 P P FMN . . . C 3 -13.529 25.276 11.868 1 18.07 ? P FMN 302 A 1 HETATM 29 O O1P FMN . . . C 3 -14.892 24.702 12.348 1 18.39 ? O1P FMN 302 A 1 HETATM 30 O O2P FMN . . . C 3 -13.642 26.704 11.321 1 19.67 ? O2P FMN 302 A 1 HETATM 31 O O3P FMN . . . C 3 -12.857 24.325 10.82 1 18.53 ? O3P FMN 302 A 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 28 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 326 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 31 #