data_4ZAL
#
_model_server_result.job_id            yqFiqQq7ODx9_L9hBCG_BA 
_model_server_result.datetime_utc      '2024-11-28 10:21:25' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4zal 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":302}' 
#
_entry.id    4ZAL 
#
_exptl.entry_id    4ZAL 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              458.36 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1-DEOXY-1-(7,8-DIMETHYL-2,4-DIOXO-3,4-DIHYDRO-2H-BENZO[G]PTERIDIN-1-ID-10(5H)-YL)-5-O-PHOSPHONATO-D-RIBITOL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4ZAL 
_cell.length_a            142.07 
_cell.length_b            142.07 
_cell.length_c            142.07 
_cell.Z_PDB               48 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4ZAL 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        196 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'F 2 3' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dodecameric 
_pdbx_struct_assembly.oligomeric_count      12 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2,3,4,5,6,7,8,9,10,11,12 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 
3 'crystal symmetry operation' 3_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 
4 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 
5 'crystal symmetry operation' 5_555 z,x,y 0 0 1 1 0 0 0 1 0 0 0 0 
6 'crystal symmetry operation' 6_555 z,-x,-y 0 0 1 -1 0 0 0 -1 0 0 0 0 
7 'crystal symmetry operation' 7_555 -z,-x,y 0 0 -1 -1 0 0 0 1 0 0 0 0 
8 'crystal symmetry operation' 8_555 -z,x,-y 0 0 -1 1 0 0 0 -1 0 0 0 0 
9 'crystal symmetry operation' 9_555 y,z,x 0 1 0 0 0 1 1 0 0 0 0 0 
10 'crystal symmetry operation' 10_555 -y,z,-x 0 -1 0 0 0 1 -1 0 0 0 0 0 
11 'crystal symmetry operation' 11_555 y,-z,-x 0 1 0 0 0 -1 -1 0 0 0 0 0 
12 'crystal symmetry operation' 12_555 -y,-z,x 0 -1 0 0 0 -1 1 0 0 0 0 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C17 H23 N4 O9 P' 
_chem_comp.formula_weight    458.36 
_chem_comp.id                FNR 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1-DEOXY-1-(7,8-DIMETHYL-2,4-DIOXO-3,4-DIHYDRO-2H-BENZO[G]PTERIDIN-1-ID-10(5H)-YL)-5-O-PHOSPHONATO-D-RIBITOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'TWO ELECTRON REDUCED FLAVIN MONONUCLEOTIDE' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C9A N10 FNR sing 103 n n 
C9A C5A FNR doub 104 n y 
C9A C9 FNR sing 105 n y 
N10 CAA FNR sing 106 n n 
N10 C1' FNR sing 107 n n 
CAA N1 FNR sing 108 n n 
CAA C4A FNR doub 109 n n 
N1 C2 FNR sing 110 n n 
N1 HN1 FNR sing 111 n n 
C2 O2 FNR doub 112 n n 
C2 N3 FNR sing 113 n n 
N3 C4 FNR sing 114 n n 
N3 H3 FNR sing 115 n n 
C4 O4 FNR doub 116 n n 
C4 C4A FNR sing 117 n n 
C4A N5 FNR sing 118 n n 
N5 C5A FNR sing 119 n n 
N5 H5 FNR sing 120 n n 
C5A C6 FNR sing 121 n y 
C6 C7 FNR doub 122 n y 
C6 H7 FNR sing 123 n n 
C7 C7M FNR sing 124 n n 
C7 C8 FNR sing 125 n y 
C7M H7M1 FNR sing 126 n n 
C7M H7M2 FNR sing 127 n n 
C7M H7M3 FNR sing 128 n n 
C8 C8M FNR sing 129 n n 
C8 C9 FNR doub 130 n y 
C8M H8M1 FNR sing 131 n n 
C8M H8M2 FNR sing 132 n n 
C8M H8M3 FNR sing 133 n n 
C9 H9 FNR sing 134 n n 
C1' C2' FNR sing 135 n n 
C1' "H1'1" FNR sing 136 n n 
C1' "H1'2" FNR sing 137 n n 
C2' O2' FNR sing 138 n n 
C2' C3' FNR sing 139 n n 
C2' H6 FNR sing 140 n n 
O2' H2' FNR sing 141 n n 
C3' O3' FNR sing 142 n n 
C3' C4' FNR sing 143 n n 
C3' H4 FNR sing 144 n n 
O3' H3' FNR sing 145 n n 
C4' O4' FNR sing 146 n n 
C4' C5' FNR sing 147 n n 
C4' H2 FNR sing 148 n n 
O4' H4' FNR sing 149 n n 
C5' O5' FNR sing 150 n n 
C5' "H5'1" FNR sing 151 n n 
C5' "H5'2" FNR sing 152 n n 
O5' P FNR sing 153 n n 
P O1P FNR sing 154 n n 
P O2P FNR doub 155 n n 
P O3P FNR sing 156 n n 
O1P H1 FNR sing 157 n n 
O3P H3P FNR sing 158 n n 
#
_atom_sites.entry_id                     4ZAL 
_atom_sites.fract_transf_matrix[1][1]    0.007039 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007039 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007039 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 4LR A 1 301 1 4LR DMA . 
C 3 FNR A 1 302 1 FNR FMN . 
D 4 SCN A 1 303 1 SCN SCN . 
E 4 SCN A 1 304 2 SCN SCN . 
F 5 HOH A 1 401 111 HOH HOH . 
F 5 HOH A 2 402 110 HOH HOH . 
F 5 HOH A 3 403 119 HOH HOH . 
F 5 HOH A 4 404 74 HOH HOH . 
F 5 HOH A 5 405 120 HOH HOH . 
F 5 HOH A 6 406 122 HOH HOH . 
F 5 HOH A 7 407 4 HOH HOH . 
F 5 HOH A 8 408 83 HOH HOH . 
F 5 HOH A 9 409 121 HOH HOH . 
F 5 HOH A 10 410 129 HOH HOH . 
F 5 HOH A 11 411 102 HOH HOH . 
F 5 HOH A 12 412 141 HOH HOH . 
F 5 HOH A 13 413 18 HOH HOH . 
F 5 HOH A 14 414 95 HOH HOH . 
F 5 HOH A 15 415 94 HOH HOH . 
F 5 HOH A 16 416 135 HOH HOH . 
F 5 HOH A 17 417 32 HOH HOH . 
F 5 HOH A 18 418 55 HOH HOH . 
F 5 HOH A 19 419 139 HOH HOH . 
F 5 HOH A 20 420 70 HOH HOH . 
F 5 HOH A 21 421 47 HOH HOH . 
F 5 HOH A 22 422 113 HOH HOH . 
F 5 HOH A 23 423 48 HOH HOH . 
F 5 HOH A 24 424 64 HOH HOH . 
F 5 HOH A 25 425 75 HOH HOH . 
F 5 HOH A 26 426 5 HOH HOH . 
F 5 HOH A 27 427 85 HOH HOH . 
F 5 HOH A 28 428 24 HOH HOH . 
F 5 HOH A 29 429 11 HOH HOH . 
F 5 HOH A 30 430 125 HOH HOH . 
F 5 HOH A 31 431 30 HOH HOH . 
F 5 HOH A 32 432 2 HOH HOH . 
F 5 HOH A 33 433 51 HOH HOH . 
F 5 HOH A 34 434 103 HOH HOH . 
F 5 HOH A 35 435 9 HOH HOH . 
F 5 HOH A 36 436 36 HOH HOH . 
F 5 HOH A 37 437 78 HOH HOH . 
F 5 HOH A 38 438 7 HOH HOH . 
F 5 HOH A 39 439 8 HOH HOH . 
F 5 HOH A 40 440 118 HOH HOH . 
F 5 HOH A 41 441 41 HOH HOH . 
F 5 HOH A 42 442 6 HOH HOH . 
F 5 HOH A 43 443 37 HOH HOH . 
F 5 HOH A 44 444 59 HOH HOH . 
F 5 HOH A 45 445 86 HOH HOH . 
F 5 HOH A 46 446 130 HOH HOH . 
F 5 HOH A 47 447 117 HOH HOH . 
F 5 HOH A 48 448 28 HOH HOH . 
F 5 HOH A 49 449 124 HOH HOH . 
F 5 HOH A 50 450 46 HOH HOH . 
F 5 HOH A 51 451 100 HOH HOH . 
F 5 HOH A 52 452 39 HOH HOH . 
F 5 HOH A 53 453 79 HOH HOH . 
F 5 HOH A 54 454 33 HOH HOH . 
F 5 HOH A 55 455 66 HOH HOH . 
F 5 HOH A 56 456 29 HOH HOH . 
F 5 HOH A 57 457 137 HOH HOH . 
F 5 HOH A 58 458 19 HOH HOH . 
F 5 HOH A 59 459 27 HOH HOH . 
F 5 HOH A 60 460 99 HOH HOH . 
F 5 HOH A 61 461 22 HOH HOH . 
F 5 HOH A 62 462 53 HOH HOH . 
F 5 HOH A 63 463 68 HOH HOH . 
F 5 HOH A 64 464 25 HOH HOH . 
F 5 HOH A 65 465 106 HOH HOH . 
F 5 HOH A 66 466 133 HOH HOH . 
F 5 HOH A 67 467 15 HOH HOH . 
F 5 HOH A 68 468 60 HOH HOH . 
F 5 HOH A 69 469 140 HOH HOH . 
F 5 HOH A 70 470 14 HOH HOH . 
F 5 HOH A 71 471 17 HOH HOH . 
F 5 HOH A 72 472 105 HOH HOH . 
F 5 HOH A 73 473 127 HOH HOH . 
F 5 HOH A 74 474 23 HOH HOH . 
F 5 HOH A 75 475 81 HOH HOH . 
F 5 HOH A 76 476 128 HOH HOH . 
F 5 HOH A 77 477 69 HOH HOH . 
F 5 HOH A 78 478 1 HOH HOH . 
F 5 HOH A 79 479 136 HOH HOH . 
F 5 HOH A 80 480 56 HOH HOH . 
F 5 HOH A 81 481 12 HOH HOH . 
F 5 HOH A 82 482 77 HOH HOH . 
F 5 HOH A 83 483 34 HOH HOH . 
F 5 HOH A 84 484 98 HOH HOH . 
F 5 HOH A 85 485 67 HOH HOH . 
F 5 HOH A 86 486 73 HOH HOH . 
F 5 HOH A 87 487 104 HOH HOH . 
F 5 HOH A 88 488 87 HOH HOH . 
F 5 HOH A 89 489 44 HOH HOH . 
F 5 HOH A 90 490 43 HOH HOH . 
F 5 HOH A 91 491 84 HOH HOH . 
F 5 HOH A 92 492 90 HOH HOH . 
F 5 HOH A 93 493 42 HOH HOH . 
F 5 HOH A 94 494 71 HOH HOH . 
F 5 HOH A 95 495 72 HOH HOH . 
F 5 HOH A 96 496 54 HOH HOH . 
F 5 HOH A 97 497 76 HOH HOH . 
F 5 HOH A 98 498 45 HOH HOH . 
F 5 HOH A 99 499 50 HOH HOH . 
F 5 HOH A 100 500 91 HOH HOH . 
F 5 HOH A 101 501 89 HOH HOH . 
F 5 HOH A 102 502 31 HOH HOH . 
F 5 HOH A 103 503 13 HOH HOH . 
F 5 HOH A 104 504 134 HOH HOH . 
F 5 HOH A 105 505 123 HOH HOH . 
F 5 HOH A 106 506 3 HOH HOH . 
F 5 HOH A 107 507 52 HOH HOH . 
F 5 HOH A 108 508 97 HOH HOH . 
F 5 HOH A 109 509 115 HOH HOH . 
F 5 HOH A 110 510 143 HOH HOH . 
F 5 HOH A 111 511 40 HOH HOH . 
F 5 HOH A 112 512 38 HOH HOH . 
F 5 HOH A 113 513 108 HOH HOH . 
F 5 HOH A 114 514 116 HOH HOH . 
F 5 HOH A 115 515 101 HOH HOH . 
F 5 HOH A 116 516 107 HOH HOH . 
F 5 HOH A 117 517 126 HOH HOH . 
F 5 HOH A 118 518 65 HOH HOH . 
F 5 HOH A 119 519 92 HOH HOH . 
F 5 HOH A 120 520 80 HOH HOH . 
F 5 HOH A 121 521 132 HOH HOH . 
F 5 HOH A 122 522 57 HOH HOH . 
F 5 HOH A 123 523 21 HOH HOH . 
F 5 HOH A 124 524 20 HOH HOH . 
F 5 HOH A 125 525 112 HOH HOH . 
F 5 HOH A 126 526 35 HOH HOH . 
F 5 HOH A 127 527 61 HOH HOH . 
F 5 HOH A 128 528 62 HOH HOH . 
F 5 HOH A 129 529 142 HOH HOH . 
F 5 HOH A 130 530 138 HOH HOH . 
F 5 HOH A 131 531 96 HOH HOH . 
F 5 HOH A 132 532 49 HOH HOH . 
F 5 HOH A 133 533 131 HOH HOH . 
F 5 HOH A 134 534 82 HOH HOH . 
F 5 HOH A 135 535 109 HOH HOH . 
F 5 HOH A 136 536 88 HOH HOH . 
F 5 HOH A 137 537 114 HOH HOH . 
F 5 HOH A 138 538 26 HOH HOH . 
F 5 HOH A 139 539 63 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C9A FNR . . . C 3 -7.278 30.048 13.693 1 22.39 ? C9A FNR 302 A 1 
HETATM 2 N N10 FNR . . . C 3 -7.085 28.733 13.221 1 22.48 ? N10 FNR 302 A 1 
HETATM 3 C CAA FNR . . . C 3 -6.423 28.568 12.063 1 20.1 ? CAA FNR 302 A 1 
HETATM 4 N N1 FNR . . . C 3 -6.478 27.305 11.463 1 20.99 ? N1 FNR 302 A 1 
HETATM 5 C C2 FNR . . . C 3 -5.805 27.119 10.287 1 19.61 ? C2 FNR 302 A 1 
HETATM 6 O O2 FNR . . . C 3 -5.914 26.01 9.679 1 21.38 ? O2 FNR 302 A 1 
HETATM 7 N N3 FNR . . . C 3 -5.117 28.127 9.63 1 20.52 ? N3 FNR 302 A 1 
HETATM 8 C C4 FNR . . . C 3 -5.115 29.444 10.2 1 21.06 ? C4 FNR 302 A 1 
HETATM 9 O O4 FNR . . . C 3 -4.591 30.326 9.506 1 20.04 ? O4 FNR 302 A 1 
HETATM 10 C C4A FNR . . . C 3 -5.794 29.631 11.394 1 22.37 ? C4A FNR 302 A 1 
HETATM 11 N N5 FNR . . . C 3 -5.832 30.946 11.917 1 24.47 ? N5 FNR 302 A 1 
HETATM 12 C C5A FNR . . . C 3 -6.629 31.06 13.032 1 22.08 ? C5A FNR 302 A 1 
HETATM 13 C C6 FNR . . . C 3 -6.734 32.41 13.509 1 25.49 ? C6 FNR 302 A 1 
HETATM 14 C C7 FNR . . . C 3 -7.531 32.658 14.568 1 25.47 ? C7 FNR 302 A 1 
HETATM 15 C C7M FNR . . . C 3 -7.597 34.089 15.024 1 30.49 ? C7M FNR 302 A 1 
HETATM 16 C C8 FNR . . . C 3 -8.229 31.664 15.169 1 27.16 ? C8 FNR 302 A 1 
HETATM 17 C C8M FNR . . . C 3 -9.011 31.901 16.291 1 31.68 ? C8M FNR 302 A 1 
HETATM 18 C C9 FNR . . . C 3 -8.149 30.282 14.781 1 24.68 ? C9 FNR 302 A 1 
HETATM 19 C C1' FNR . . . C 3 -7.752 27.618 13.948 1 25.4 ? C1' FNR 302 A 1 
HETATM 20 C C2' FNR . . . C 3 -9.049 27.038 13.777 1 25.38 ? C2' FNR 302 A 1 
HETATM 21 O O2' FNR . . . C 3 -9.887 28.145 13.62 1 22.19 ? O2' FNR 302 A 1 
HETATM 22 C C3' FNR . . . C 3 -9.383 25.945 14.67 1 23.09 ? C3' FNR 302 A 1 
HETATM 23 O O3' FNR . . . C 3 -8.537 24.778 14.568 1 22.76 ? O3' FNR 302 A 1 
HETATM 24 C C4' FNR . . . C 3 -10.873 25.599 14.472 1 21.8 ? C4' FNR 302 A 1 
HETATM 25 O O4' FNR . . . C 3 -11.183 24.476 15.332 1 23.08 ? O4' FNR 302 A 1 
HETATM 26 C C5' FNR . . . C 3 -11.333 25.446 13.034 1 21.12 ? C5' FNR 302 A 1 
HETATM 27 O O5' FNR . . . C 3 -12.754 25.154 13.113 1 21.97 ? O5' FNR 302 A 1 
HETATM 28 P P FNR . . . C 3 -13.611 25.362 11.811 1 20.06 ? P FNR 302 A 1 
HETATM 29 O O1P FNR . . . C 3 -15.009 24.848 12.243 1 22.48 ? O1P FNR 302 A 1 
HETATM 30 O O2P FNR . . . C 3 -13.676 26.795 11.375 1 20.8 ? O2P FNR 302 A 1 
HETATM 31 O O3P FNR . . . C 3 -12.963 24.426 10.739 1 23.58 ? O3P FNR 302 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           297 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           31 
#