data_4ZAW # _model_server_result.job_id '_FS7BS-YImG1Tu8c5dlUtg' _model_server_result.datetime_utc '2024-11-07 00:29:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4zaw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 4ZAW # _exptl.entry_id 4ZAW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 525.469 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '1-deoxy-5-O-phosphono-1-(3,3,4,5-tetramethyl-9,11-dioxo-2,3,8,9,10,11-hexahydro-7H-quinolino[1,8-fg]pteridin-12-ium-7-y l)-D-ribitol' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4ZAW _cell.length_a 142.74 _cell.length_b 142.74 _cell.length_c 142.74 _cell.Z_PDB 48 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4ZAW _symmetry.cell_setting ? _symmetry.Int_Tables_number 196 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'F 2 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dodecameric _pdbx_struct_assembly.oligomeric_count 12 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6,7,8,9,10,11,12 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 4 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 5 'crystal symmetry operation' 5_555 z,x,y 0 0 1 1 0 0 0 1 0 0 0 0 6 'crystal symmetry operation' 6_555 z,-x,-y 0 0 1 -1 0 0 0 -1 0 0 0 0 7 'crystal symmetry operation' 7_555 -z,-x,y 0 0 -1 -1 0 0 0 1 0 0 0 0 8 'crystal symmetry operation' 8_555 -z,x,-y 0 0 -1 1 0 0 0 -1 0 0 0 0 9 'crystal symmetry operation' 9_555 y,z,x 0 1 0 0 0 1 1 0 0 0 0 0 10 'crystal symmetry operation' 10_555 -y,z,-x 0 -1 0 0 0 1 -1 0 0 0 0 0 11 'crystal symmetry operation' 11_555 y,-z,-x 0 1 0 0 0 -1 -1 0 0 0 0 0 12 'crystal symmetry operation' 12_555 -y,-z,x 0 -1 0 0 0 -1 1 0 0 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C22 H30 N4 O9 P 1' _chem_comp.formula_weight 525.469 _chem_comp.id 4LU _chem_comp.mon_nstd_flag . _chem_comp.name '1-deoxy-5-O-phosphono-1-(3,3,4,5-tetramethyl-9,11-dioxo-2,3,8,9,10,11-hexahydro-7H-quinolino[1,8-fg]pteridin-12-ium-7-y l)-D-ribitol' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'prenylated-FMN iminium form' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C7M C7 4LU sing 1 n n C12 C5 4LU sing 2 n n C8M C8 4LU sing 3 n n C7 C8 4LU doub 4 n y C7 C6 4LU sing 5 n y C8 C9 4LU sing 6 n y C13 C5 4LU sing 7 n n C5 C6 4LU sing 8 n n C5 C3 4LU sing 9 n n C6 C5A 4LU doub 10 n y C9 C9A 4LU doub 11 n y C3 C1 4LU sing 12 n n C5A C9A 4LU sing 13 n y C5A N5 4LU sing 14 n n C9A N10 4LU sing 15 n n C1 N5 4LU doub 16 n n N5 C4A 4LU sing 17 n n O2' C2' 4LU sing 18 n n N10 C1' 4LU sing 19 n n N10 C10 4LU sing 20 n n C4A C10 4LU doub 21 n n C4A C4 4LU sing 22 n n C1' C2' 4LU sing 23 n n C10 N1 4LU sing 24 n n C2' C3' 4LU sing 25 n n O4 C4 4LU doub 26 n n C3' C4' 4LU sing 27 n n C3' O3' 4LU sing 28 n n C4 N3 4LU sing 29 n n C4' O4' 4LU sing 30 n n C4' C5' 4LU sing 31 n n O5' C5' 4LU sing 32 n n O5' P 4LU sing 33 n n N1 C2 4LU sing 34 n n N3 C2 4LU sing 35 n n O2P P 4LU doub 36 n n C2 O2 4LU doub 37 n n P O3P 4LU sing 38 n n P O1P 4LU sing 39 n n C9 H1 4LU sing 40 n n N3 H2 4LU sing 41 n n C13 H3 4LU sing 42 n n C13 H4 4LU sing 43 n n C13 H5 4LU sing 44 n n C1 H6 4LU sing 45 n n C3 H9 4LU sing 46 n n C3 H10 4LU sing 47 n n C12 H11 4LU sing 48 n n C12 H12 4LU sing 49 n n C12 H13 4LU sing 50 n n C7M H14 4LU sing 51 n n C7M H15 4LU sing 52 n n C7M H16 4LU sing 53 n n C8M H17 4LU sing 54 n n C8M H18 4LU sing 55 n n C8M H19 4LU sing 56 n n C1' H20 4LU sing 57 n n C1' H21 4LU sing 58 n n C2' H22 4LU sing 59 n n O2' H23 4LU sing 60 n n C3' H24 4LU sing 61 n n O3' H25 4LU sing 62 n n C4' H26 4LU sing 63 n n O4' H27 4LU sing 64 n n C5' H28 4LU sing 65 n n C5' H29 4LU sing 66 n n O3P H30 4LU sing 67 n n O1P H31 4LU sing 68 n n N1 H7 4LU sing 69 n n # _atom_sites.entry_id 4ZAW _atom_sites.fract_transf_matrix[1][1] 0.007006 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007006 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007006 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 4LU A 1 301 1 4LU FMQ . C 3 SCN A 1 302 1 SCN SCN . D 4 PO4 A 1 303 2 PO4 PO4 . E 4 PO4 A 1 304 3 PO4 PO4 . F 5 HOH A 1 401 90 HOH HOH . F 5 HOH A 2 402 83 HOH HOH . F 5 HOH A 3 403 51 HOH HOH . F 5 HOH A 4 404 99 HOH HOH . F 5 HOH A 5 405 95 HOH HOH . F 5 HOH A 6 406 96 HOH HOH . F 5 HOH A 7 407 55 HOH HOH . F 5 HOH A 8 408 62 HOH HOH . F 5 HOH A 9 409 89 HOH HOH . F 5 HOH A 10 410 53 HOH HOH . F 5 HOH A 11 411 40 HOH HOH . F 5 HOH A 12 412 47 HOH HOH . F 5 HOH A 13 413 31 HOH HOH . F 5 HOH A 14 414 4 HOH HOH . F 5 HOH A 15 415 19 HOH HOH . F 5 HOH A 16 416 26 HOH HOH . F 5 HOH A 17 417 72 HOH HOH . F 5 HOH A 18 418 11 HOH HOH . F 5 HOH A 19 419 36 HOH HOH . F 5 HOH A 20 420 39 HOH HOH . F 5 HOH A 21 421 67 HOH HOH . F 5 HOH A 22 422 97 HOH HOH . F 5 HOH A 23 423 43 HOH HOH . F 5 HOH A 24 424 58 HOH HOH . F 5 HOH A 25 425 30 HOH HOH . F 5 HOH A 26 426 13 HOH HOH . F 5 HOH A 27 427 88 HOH HOH . F 5 HOH A 28 428 64 HOH HOH . F 5 HOH A 29 429 74 HOH HOH . F 5 HOH A 30 430 17 HOH HOH . F 5 HOH A 31 431 44 HOH HOH . F 5 HOH A 32 432 35 HOH HOH . F 5 HOH A 33 433 21 HOH HOH . F 5 HOH A 34 434 86 HOH HOH . F 5 HOH A 35 435 92 HOH HOH . F 5 HOH A 36 436 48 HOH HOH . F 5 HOH A 37 437 15 HOH HOH . F 5 HOH A 38 438 2 HOH HOH . F 5 HOH A 39 439 8 HOH HOH . F 5 HOH A 40 440 77 HOH HOH . F 5 HOH A 41 441 57 HOH HOH . F 5 HOH A 42 442 28 HOH HOH . F 5 HOH A 43 443 56 HOH HOH . F 5 HOH A 44 444 87 HOH HOH . F 5 HOH A 45 445 16 HOH HOH . F 5 HOH A 46 446 46 HOH HOH . F 5 HOH A 47 447 6 HOH HOH . F 5 HOH A 48 448 59 HOH HOH . F 5 HOH A 49 449 24 HOH HOH . F 5 HOH A 50 450 25 HOH HOH . F 5 HOH A 51 451 18 HOH HOH . F 5 HOH A 52 452 85 HOH HOH . F 5 HOH A 53 453 69 HOH HOH . F 5 HOH A 54 454 32 HOH HOH . F 5 HOH A 55 455 10 HOH HOH . F 5 HOH A 56 456 5 HOH HOH . F 5 HOH A 57 457 81 HOH HOH . F 5 HOH A 58 458 49 HOH HOH . F 5 HOH A 59 459 37 HOH HOH . F 5 HOH A 60 460 12 HOH HOH . F 5 HOH A 61 461 80 HOH HOH . F 5 HOH A 62 462 52 HOH HOH . F 5 HOH A 63 463 60 HOH HOH . F 5 HOH A 64 464 27 HOH HOH . F 5 HOH A 65 465 78 HOH HOH . F 5 HOH A 66 466 22 HOH HOH . F 5 HOH A 67 467 42 HOH HOH . F 5 HOH A 68 468 14 HOH HOH . F 5 HOH A 69 469 23 HOH HOH . F 5 HOH A 70 470 79 HOH HOH . F 5 HOH A 71 471 76 HOH HOH . F 5 HOH A 72 472 1 HOH HOH . F 5 HOH A 73 473 7 HOH HOH . F 5 HOH A 74 474 20 HOH HOH . F 5 HOH A 75 475 3 HOH HOH . F 5 HOH A 76 476 50 HOH HOH . F 5 HOH A 77 477 29 HOH HOH . F 5 HOH A 78 478 82 HOH HOH . F 5 HOH A 79 479 34 HOH HOH . F 5 HOH A 80 480 61 HOH HOH . F 5 HOH A 81 481 38 HOH HOH . F 5 HOH A 82 482 9 HOH HOH . F 5 HOH A 83 483 63 HOH HOH . F 5 HOH A 84 484 65 HOH HOH . F 5 HOH A 85 485 66 HOH HOH . F 5 HOH A 86 486 54 HOH HOH . F 5 HOH A 87 487 100 HOH HOH . F 5 HOH A 88 488 75 HOH HOH . F 5 HOH A 89 489 33 HOH HOH . F 5 HOH A 90 490 84 HOH HOH . F 5 HOH A 91 491 41 HOH HOH . F 5 HOH A 92 492 45 HOH HOH . F 5 HOH A 93 493 68 HOH HOH . F 5 HOH A 94 494 73 HOH HOH . F 5 HOH A 95 495 91 HOH HOH . F 5 HOH A 96 496 70 HOH HOH . F 5 HOH A 97 497 94 HOH HOH . F 5 HOH A 98 498 98 HOH HOH . F 5 HOH A 99 499 93 HOH HOH . F 5 HOH A 100 500 71 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C9 4LU . . . B 2 -8.416 29.861 14.733 1 19.3 ? C9 4LU 301 A 1 HETATM 2 C C8 4LU . . . B 2 -8.733 31.163 15.191 1 21.56 ? C8 4LU 301 A 1 HETATM 3 C C7 4LU . . . B 2 -7.923 32.241 14.819 1 20.16 ? C7 4LU 301 A 1 HETATM 4 C C10 4LU . . . B 2 -6.447 28.241 12.187 1 18.26 ? C10 4LU 301 A 1 HETATM 5 C C6 4LU . . . B 2 -6.809 32.031 13.933 1 19.25 ? C6 4LU 301 A 1 HETATM 6 N N3 4LU . . . B 2 -5.344 28.004 9.718 1 17.42 ? N3 4LU 301 A 1 HETATM 7 C C2 4LU . . . B 2 -5.96 26.947 10.212 1 15.74 ? C2 4LU 301 A 1 HETATM 8 C C13 4LU . . . B 2 -6.227 33.874 12.323 1 19.92 ? C13 4LU 301 A 1 HETATM 9 C C5 4LU . . . B 2 -5.864 33.037 13.549 1 19.83 ? C5 4LU 301 A 1 HETATM 10 C C1 4LU . . . B 2 -4.56 31.39 12.188 1 21.43 ? C1 4LU 301 A 1 HETATM 11 O O2 4LU . . . B 2 -6.068 25.91 9.539 1 16.12 ? O2 4LU 301 A 1 HETATM 12 N N1 4LU . . . B 2 -6.513 27.043 11.436 1 16.61 ? N1 4LU 301 A 1 HETATM 13 C C4 4LU . . . B 2 -5.26 29.247 10.384 1 19.13 ? C4 4LU 301 A 1 HETATM 14 O O4 4LU . . . B 2 -4.702 30.175 9.734 1 16.17 ? O4 4LU 301 A 1 HETATM 15 C C4A 4LU . . . B 2 -5.79 29.362 11.675 1 18.37 ? C4A 4LU 301 A 1 HETATM 16 N N5 4LU . . . B 2 -5.521 30.38 12.583 1 20.28 ? N5 4LU 301 A 1 HETATM 17 C C3 4LU . . . B 2 -4.485 32.364 13.387 1 19.52 ? C3 4LU 301 A 1 HETATM 18 C C12 4LU . . . B 2 -5.507 34.06 14.756 1 22.72 ? C12 4LU 301 A 1 HETATM 19 C C5A 4LU . . . B 2 -6.527 30.678 13.477 1 19.32 ? C5A 4LU 301 A 1 HETATM 20 C C7M 4LU . . . B 2 -8.384 33.566 15.171 1 23.08 ? C7M 4LU 301 A 1 HETATM 21 C C8M 4LU . . . B 2 -10.033 31.304 15.851 1 23.21 ? C8M 4LU 301 A 1 HETATM 22 C C9A 4LU . . . B 2 -7.315 29.606 13.897 1 18.37 ? C9A 4LU 301 A 1 HETATM 23 N N10 4LU . . . B 2 -7.056 28.327 13.407 1 18.7 ? N10 4LU 301 A 1 HETATM 24 C C1' 4LU . . . B 2 -7.741 27.109 13.969 1 18.89 ? C1' 4LU 301 A 1 HETATM 25 C C2' 4LU . . . B 2 -9.112 26.739 13.531 1 19.67 ? C2' 4LU 301 A 1 HETATM 26 O O2' 4LU . . . B 2 -10.076 27.822 13.59 1 18.69 ? O2' 4LU 301 A 1 HETATM 27 C C3' 4LU . . . B 2 -9.629 25.547 14.305 1 19.85 ? C3' 4LU 301 A 1 HETATM 28 O O3' 4LU . . . B 2 -8.782 24.435 14.54 1 21.13 ? O3' 4LU 301 A 1 HETATM 29 C C4' 4LU . . . B 2 -11.094 25.403 14.452 1 20.21 ? C4' 4LU 301 A 1 HETATM 30 O O4' 4LU . . . B 2 -11.479 24.298 15.251 1 19.97 ? O4' 4LU 301 A 1 HETATM 31 C C5' 4LU . . . B 2 -11.582 25.135 13.075 1 19.74 ? C5' 4LU 301 A 1 HETATM 32 O O5' 4LU . . . B 2 -13.002 24.991 13.115 1 17.71 ? O5' 4LU 301 A 1 HETATM 33 P P 4LU . . . B 2 -13.773 25.258 11.716 1 18.94 ? P 4LU 301 A 1 HETATM 34 O O2P 4LU . . . B 2 -13.142 24.342 10.61 1 19.87 ? O2P 4LU 301 A 1 HETATM 35 O O3P 4LU . . . B 2 -15.18 24.737 12.031 1 17.72 ? O3P 4LU 301 A 1 HETATM 36 O O1P 4LU . . . B 2 -13.772 26.686 11.287 1 17.42 ? O1P 4LU 301 A 1 # _model_server_stats.io_time_ms 57 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 310 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 36 #