data_4ZB9 # _model_server_result.job_id 5PmLHVIJbeZHFgcNpfaUEg _model_server_result.datetime_utc '2024-11-25 08:39:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4zb9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":300}' # _entry.id 4ZB9 # _exptl.entry_id 4ZB9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 612.631 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'OXIDIZED GLUTATHIONE DISULFIDE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4ZB9 _cell.length_a 88.913 _cell.length_b 88.913 _cell.length_c 240.426 _cell.Z_PDB 32 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4ZB9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 software_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,H,I 1 1 C,D,F,G,J,K 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 G N N # _chem_comp.formula 'C20 H32 N6 O12 S2' _chem_comp.formula_weight 612.631 _chem_comp.id GDS _chem_comp.mon_nstd_flag . _chem_comp.name 'OXIDIZED GLUTATHIONE DISULFIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 CA1 GDS sing 70 n n N1 HN11 GDS sing 71 n n N1 HN12 GDS sing 72 n n CA1 C1 GDS sing 73 n n CA1 CB1 GDS sing 74 n n CA1 HA1 GDS sing 75 n n C1 OE1 GDS doub 76 n n C1 OE2 GDS sing 77 n n OE2 HO2 GDS sing 78 n n CB1 CG1 GDS sing 79 n n CB1 HB11 GDS sing 80 n n CB1 HB12 GDS sing 81 n n CG1 CD1 GDS sing 82 n n CG1 HG11 GDS sing 83 n n CG1 HG12 GDS sing 84 n n CD1 O1 GDS doub 85 n n CD1 N2 GDS sing 86 n n N2 CA2 GDS sing 87 n n N2 HN2 GDS sing 88 n n CA2 C2 GDS sing 89 n n CA2 CB2 GDS sing 90 n n CA2 HA2 GDS sing 91 n n C2 O2 GDS doub 92 n n C2 N3 GDS sing 93 n n CB2 SG2 GDS sing 94 n n CB2 HB21 GDS sing 95 n n CB2 HB22 GDS sing 96 n n SG2 SG5 GDS sing 97 n n N3 CA3 GDS sing 98 n n N3 HN3 GDS sing 99 n n CA3 C3 GDS sing 100 n n CA3 HA31 GDS sing 101 n n CA3 HA32 GDS sing 102 n n C3 OE3 GDS doub 103 n n C3 OE4 GDS sing 104 n n OE4 HO4 GDS sing 105 n n N4 CA4 GDS sing 106 n n N4 C5 GDS sing 107 n n N4 HN4 GDS sing 108 n n CA4 C4 GDS sing 109 n n CA4 HA41 GDS sing 110 n n CA4 HA42 GDS sing 111 n n C4 OE5 GDS doub 112 n n C4 OE6 GDS sing 113 n n OE6 HO6 GDS sing 114 n n C5 O5 GDS doub 115 n n C5 CA5 GDS sing 116 n n CA5 N5 GDS sing 117 n n CA5 CB5 GDS sing 118 n n CA5 HA5 GDS sing 119 n n N5 CD6 GDS sing 120 n n N5 HN5 GDS sing 121 n n CB5 SG5 GDS sing 122 n n CB5 HB51 GDS sing 123 n n CB5 HB52 GDS sing 124 n n CA6 C6 GDS sing 125 n n CA6 N6 GDS sing 126 n n CA6 CB6 GDS sing 127 n n CA6 HA6 GDS sing 128 n n C6 OE7 GDS doub 129 n n C6 OE8 GDS sing 130 n n OE8 HO8 GDS sing 131 n n N6 HN61 GDS sing 132 n n N6 HN62 GDS sing 133 n n CB6 CG6 GDS sing 134 n n CB6 HB61 GDS sing 135 n n CB6 HB62 GDS sing 136 n n CG6 CD6 GDS sing 137 n n CG6 HG61 GDS sing 138 n n CG6 HG62 GDS sing 139 n n CD6 O6 GDS doub 140 n n # _atom_sites.entry_id 4ZB9 _atom_sites.fract_transf_matrix[1][1] 0.011247 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011247 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004159 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 GDS A 1 300 300 GDS GDS . F 3 CL C 1 301 301 CL CL . G 2 GDS D 1 300 300 GDS GDS . H 4 HOH A 1 401 95 HOH HOH . H 4 HOH A 2 402 62 HOH HOH . H 4 HOH A 3 403 111 HOH HOH . H 4 HOH A 4 404 28 HOH HOH . H 4 HOH A 5 405 120 HOH HOH . H 4 HOH A 6 406 58 HOH HOH . H 4 HOH A 7 407 117 HOH HOH . H 4 HOH A 8 408 21 HOH HOH . H 4 HOH A 9 409 155 HOH HOH . H 4 HOH A 10 410 55 HOH HOH . H 4 HOH A 11 411 157 HOH HOH . H 4 HOH A 12 412 67 HOH HOH . H 4 HOH A 13 413 23 HOH HOH . H 4 HOH A 14 414 6 HOH HOH . H 4 HOH A 15 415 50 HOH HOH . H 4 HOH A 16 416 44 HOH HOH . H 4 HOH A 17 417 3 HOH HOH . H 4 HOH A 18 418 98 HOH HOH . H 4 HOH A 19 419 106 HOH HOH . H 4 HOH A 20 420 19 HOH HOH . H 4 HOH A 21 421 182 HOH HOH . H 4 HOH A 22 422 105 HOH HOH . H 4 HOH A 23 423 88 HOH HOH . H 4 HOH A 24 424 31 HOH HOH . H 4 HOH A 25 425 156 HOH HOH . H 4 HOH A 26 426 1 HOH HOH . H 4 HOH A 27 427 115 HOH HOH . H 4 HOH A 28 428 122 HOH HOH . H 4 HOH A 29 429 141 HOH HOH . H 4 HOH A 30 430 84 HOH HOH . H 4 HOH A 31 431 187 HOH HOH . H 4 HOH A 32 432 132 HOH HOH . H 4 HOH A 33 433 4 HOH HOH . H 4 HOH A 34 434 38 HOH HOH . H 4 HOH A 35 435 8 HOH HOH . H 4 HOH A 36 436 87 HOH HOH . H 4 HOH A 37 437 79 HOH HOH . H 4 HOH A 38 438 183 HOH HOH . H 4 HOH A 39 439 181 HOH HOH . H 4 HOH A 40 440 133 HOH HOH . H 4 HOH A 41 441 93 HOH HOH . H 4 HOH A 42 442 148 HOH HOH . H 4 HOH A 43 443 172 HOH HOH . H 4 HOH A 44 444 171 HOH HOH . H 4 HOH A 45 445 81 HOH HOH . I 4 HOH B 1 301 123 HOH HOH . I 4 HOH B 2 302 142 HOH HOH . I 4 HOH B 3 303 96 HOH HOH . I 4 HOH B 4 304 138 HOH HOH . I 4 HOH B 5 305 49 HOH HOH . I 4 HOH B 6 306 78 HOH HOH . I 4 HOH B 7 307 128 HOH HOH . I 4 HOH B 8 308 64 HOH HOH . I 4 HOH B 9 309 15 HOH HOH . I 4 HOH B 10 310 24 HOH HOH . I 4 HOH B 11 311 110 HOH HOH . I 4 HOH B 12 312 136 HOH HOH . I 4 HOH B 13 313 61 HOH HOH . I 4 HOH B 14 314 13 HOH HOH . I 4 HOH B 15 315 99 HOH HOH . I 4 HOH B 16 316 5 HOH HOH . I 4 HOH B 17 317 140 HOH HOH . I 4 HOH B 18 318 119 HOH HOH . I 4 HOH B 19 319 39 HOH HOH . I 4 HOH B 20 320 116 HOH HOH . I 4 HOH B 21 321 77 HOH HOH . I 4 HOH B 22 322 103 HOH HOH . I 4 HOH B 23 323 11 HOH HOH . I 4 HOH B 24 324 60 HOH HOH . I 4 HOH B 25 325 25 HOH HOH . I 4 HOH B 26 326 149 HOH HOH . I 4 HOH B 27 327 66 HOH HOH . I 4 HOH B 28 328 134 HOH HOH . I 4 HOH B 29 329 146 HOH HOH . I 4 HOH B 30 330 104 HOH HOH . I 4 HOH B 31 331 30 HOH HOH . I 4 HOH B 32 332 101 HOH HOH . I 4 HOH B 33 333 33 HOH HOH . I 4 HOH B 34 334 112 HOH HOH . I 4 HOH B 35 335 53 HOH HOH . I 4 HOH B 36 336 152 HOH HOH . I 4 HOH B 37 337 127 HOH HOH . I 4 HOH B 38 338 73 HOH HOH . I 4 HOH B 39 339 166 HOH HOH . I 4 HOH B 40 340 178 HOH HOH . I 4 HOH B 41 341 131 HOH HOH . I 4 HOH B 42 342 100 HOH HOH . I 4 HOH B 43 343 175 HOH HOH . I 4 HOH B 44 344 167 HOH HOH . I 4 HOH B 45 345 2 HOH HOH . I 4 HOH B 46 346 184 HOH HOH . I 4 HOH B 47 347 54 HOH HOH . J 4 HOH C 1 401 65 HOH HOH . J 4 HOH C 2 402 47 HOH HOH . J 4 HOH C 3 403 176 HOH HOH . J 4 HOH C 4 404 57 HOH HOH . J 4 HOH C 5 405 14 HOH HOH . J 4 HOH C 6 406 63 HOH HOH . J 4 HOH C 7 407 16 HOH HOH . J 4 HOH C 8 408 40 HOH HOH . J 4 HOH C 9 409 36 HOH HOH . J 4 HOH C 10 410 108 HOH HOH . J 4 HOH C 11 411 45 HOH HOH . J 4 HOH C 12 412 70 HOH HOH . J 4 HOH C 13 413 27 HOH HOH . J 4 HOH C 14 414 74 HOH HOH . J 4 HOH C 15 415 29 HOH HOH . J 4 HOH C 16 416 154 HOH HOH . J 4 HOH C 17 417 121 HOH HOH . J 4 HOH C 18 418 159 HOH HOH . J 4 HOH C 19 419 80 HOH HOH . J 4 HOH C 20 420 42 HOH HOH . J 4 HOH C 21 421 46 HOH HOH . J 4 HOH C 22 422 17 HOH HOH . J 4 HOH C 23 423 185 HOH HOH . J 4 HOH C 24 424 89 HOH HOH . J 4 HOH C 25 425 151 HOH HOH . J 4 HOH C 26 426 170 HOH HOH . J 4 HOH C 27 427 186 HOH HOH . J 4 HOH C 28 428 59 HOH HOH . J 4 HOH C 29 429 130 HOH HOH . J 4 HOH C 30 430 135 HOH HOH . J 4 HOH C 31 431 48 HOH HOH . J 4 HOH C 32 432 158 HOH HOH . J 4 HOH C 33 433 162 HOH HOH . J 4 HOH C 34 434 139 HOH HOH . J 4 HOH C 35 435 129 HOH HOH . J 4 HOH C 36 436 109 HOH HOH . J 4 HOH C 37 437 126 HOH HOH . K 4 HOH D 1 401 137 HOH HOH . K 4 HOH D 2 402 161 HOH HOH . K 4 HOH D 3 403 114 HOH HOH . K 4 HOH D 4 404 125 HOH HOH . K 4 HOH D 5 405 82 HOH HOH . K 4 HOH D 6 406 56 HOH HOH . K 4 HOH D 7 407 153 HOH HOH . K 4 HOH D 8 408 147 HOH HOH . K 4 HOH D 9 409 51 HOH HOH . K 4 HOH D 10 410 34 HOH HOH . K 4 HOH D 11 411 113 HOH HOH . K 4 HOH D 12 412 71 HOH HOH . K 4 HOH D 13 413 164 HOH HOH . K 4 HOH D 14 414 97 HOH HOH . K 4 HOH D 15 415 43 HOH HOH . K 4 HOH D 16 416 76 HOH HOH . K 4 HOH D 17 417 107 HOH HOH . K 4 HOH D 18 418 52 HOH HOH . K 4 HOH D 19 419 7 HOH HOH . K 4 HOH D 20 420 26 HOH HOH . K 4 HOH D 21 421 102 HOH HOH . K 4 HOH D 22 422 83 HOH HOH . K 4 HOH D 23 423 92 HOH HOH . K 4 HOH D 24 424 37 HOH HOH . K 4 HOH D 25 425 86 HOH HOH . K 4 HOH D 26 426 32 HOH HOH . K 4 HOH D 27 427 41 HOH HOH . K 4 HOH D 28 428 72 HOH HOH . K 4 HOH D 29 429 179 HOH HOH . K 4 HOH D 30 430 68 HOH HOH . K 4 HOH D 31 431 35 HOH HOH . K 4 HOH D 32 432 18 HOH HOH . K 4 HOH D 33 433 163 HOH HOH . K 4 HOH D 34 434 69 HOH HOH . K 4 HOH D 35 435 22 HOH HOH . K 4 HOH D 36 436 9 HOH HOH . K 4 HOH D 37 437 174 HOH HOH . K 4 HOH D 38 438 75 HOH HOH . K 4 HOH D 39 439 20 HOH HOH . K 4 HOH D 40 440 10 HOH HOH . K 4 HOH D 41 441 177 HOH HOH . K 4 HOH D 42 442 90 HOH HOH . K 4 HOH D 43 443 85 HOH HOH . K 4 HOH D 44 444 150 HOH HOH . K 4 HOH D 45 445 145 HOH HOH . K 4 HOH D 46 446 165 HOH HOH . K 4 HOH D 47 447 180 HOH HOH . K 4 HOH D 48 448 124 HOH HOH . K 4 HOH D 49 449 94 HOH HOH . K 4 HOH D 50 450 144 HOH HOH . K 4 HOH D 51 451 12 HOH HOH . K 4 HOH D 52 452 169 HOH HOH . K 4 HOH D 53 453 118 HOH HOH . K 4 HOH D 54 454 168 HOH HOH . K 4 HOH D 55 455 91 HOH HOH . K 4 HOH D 56 456 173 HOH HOH . K 4 HOH D 57 457 160 HOH HOH . K 4 HOH D 58 458 143 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 GDS . . . E 2 4.93 1.277 29.36 1 37.79 ? N1 GDS 300 A 1 HETATM 2 C CA1 GDS . . . E 2 5.936 2.302 29.714 1 37.5 ? CA1 GDS 300 A 1 HETATM 3 C C1 GDS . . . E 2 5.291 3.494 30.457 1 36.76 ? C1 GDS 300 A 1 HETATM 4 O OE1 GDS . . . E 2 4.193 3.915 29.996 1 36.73 ? OE1 GDS 300 A 1 HETATM 5 O OE2 GDS . . . E 2 5.867 3.932 31.454 1 36.45 ? OE2 GDS 300 A 1 HETATM 6 C CB1 GDS . . . E 2 6.617 2.851 28.457 1 37.16 ? CB1 GDS 300 A 1 HETATM 7 C CG1 GDS . . . E 2 7.948 3.449 28.891 1 37.24 ? CG1 GDS 300 A 1 HETATM 8 C CD1 GDS . . . E 2 8.767 3.838 27.672 1 37.07 ? CD1 GDS 300 A 1 HETATM 9 O O1 GDS . . . E 2 8.474 3.528 26.511 1 37.91 ? O1 GDS 300 A 1 HETATM 10 N N2 GDS . . . E 2 9.925 4.579 27.936 1 35.32 ? N2 GDS 300 A 1 HETATM 11 C CA2 GDS . . . E 2 10.812 5.03 26.872 1 35.27 ? CA2 GDS 300 A 1 HETATM 12 C C2 GDS . . . E 2 12.268 4.676 27.252 1 36.06 ? C2 GDS 300 A 1 HETATM 13 O O2 GDS . . . E 2 12.662 4.848 28.419 1 37.09 ? O2 GDS 300 A 1 HETATM 14 C CB2 GDS . . . E 2 10.66 6.53 26.745 1 35.79 ? CB2 GDS 300 A 1 HETATM 15 S SG2 GDS . . . E 2 12.083 7.133 25.829 1 26.99 ? SG2 GDS 300 A 1 HETATM 16 N N3 GDS . . . E 2 13.081 4.19 26.277 1 35.38 ? N3 GDS 300 A 1 HETATM 17 C CA3 GDS . . . E 2 14.459 3.849 26.645 1 35.59 ? CA3 GDS 300 A 1 HETATM 18 C C3 GDS . . . E 2 14.695 2.38 26.648 1 36.46 ? C3 GDS 300 A 1 HETATM 19 O OE3 GDS . . . E 2 13.679 1.664 26.451 1 37.02 ? OE3 GDS 300 A 1 HETATM 20 O OE4 GDS . . . E 2 15.821 1.95 26.855 1 36.32 ? OE4 GDS 300 A 1 HETATM 21 N N4 GDS . . . E 2 12.163 3.409 21.667 1 43.22 ? N4 GDS 300 A 1 HETATM 22 C CA4 GDS . . . E 2 11.998 1.973 21.54 1 44.14 ? CA4 GDS 300 A 1 HETATM 23 C C4 GDS . . . E 2 10.512 1.642 21.534 1 45.48 ? C4 GDS 300 A 1 HETATM 24 O OE5 GDS . . . E 2 9.728 2.629 21.665 1 46.05 ? OE5 GDS 300 A 1 HETATM 25 O OE6 GDS . . . E 2 10.185 0.467 21.424 1 46.19 ? OE6 GDS 300 A 1 HETATM 26 C C5 GDS . . . E 2 12.284 3.907 22.913 1 43.47 ? C5 GDS 300 A 1 HETATM 27 O O5 GDS . . . E 2 12.232 3.17 23.906 1 43.39 ? O5 GDS 300 A 1 HETATM 28 C CA5 GDS . . . E 2 12.447 5.437 23.091 1 43.37 ? CA5 GDS 300 A 1 HETATM 29 N N5 GDS . . . E 2 13.196 6.056 21.983 1 43.94 ? N5 GDS 300 A 1 HETATM 30 C CB5 GDS . . . E 2 11.067 6.043 23.135 1 42.33 ? CB5 GDS 300 A 1 HETATM 31 S SG5 GDS . . . E 2 11.202 7.618 23.993 1 45.67 ? SG5 GDS 300 A 1 HETATM 32 C CA6 GDS . . . E 2 17.258 7.987 20.355 1 49.03 ? CA6 GDS 300 A 1 HETATM 33 C C6 GDS . . . E 2 18.231 8.872 21.131 1 49.82 ? C6 GDS 300 A 1 HETATM 34 O OE7 GDS . . . E 2 17.738 9.472 22.127 1 50.58 ? OE7 GDS 300 A 1 HETATM 35 O OE8 GDS . . . E 2 19.399 8.934 20.748 1 49.07 ? OE8 GDS 300 A 1 HETATM 36 N N6 GDS . . . E 2 17.833 6.642 20.101 1 48.03 ? N6 GDS 300 A 1 HETATM 37 C CB6 GDS . . . E 2 15.94 7.896 21.176 1 47.7 ? CB6 GDS 300 A 1 HETATM 38 C CG6 GDS . . . E 2 15.195 6.645 20.688 1 46.26 ? CG6 GDS 300 A 1 HETATM 39 C CD6 GDS . . . E 2 14.565 5.938 21.871 1 44.32 ? CD6 GDS 300 A 1 HETATM 40 O O6 GDS . . . E 2 15.186 5.267 22.693 1 43.75 ? O6 GDS 300 A 1 # _model_server_stats.io_time_ms 22 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 378 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 40 #