data_4ZBE # _model_server_result.job_id 4VB0WnfmsX4mgyzhQBEprg _model_server_result.datetime_utc '2024-10-19 13:24:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4zbe # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 4ZBE # _exptl.entry_id 4ZBE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 192.124 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CITRIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4ZBE _cell.length_a 51.315 _cell.length_b 66.695 _cell.length_c 73.208 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4ZBE _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 43 A CYS 68 1_555 A SG CYS 212 A CYS 237 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.09 ? covale ? covale1 A OG SER 44 A SER 69 1_555 C CAN NXL . A NXL 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.503 ? # _chem_comp.formula 'C6 H8 O7' _chem_comp.formula_weight 192.124 _chem_comp.id CIT _chem_comp.mon_nstd_flag . _chem_comp.name 'CITRIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 CIT doub 70 n n C1 O2 CIT sing 71 n n C1 C2 CIT sing 72 n n O2 HO2 CIT sing 73 n n C2 C3 CIT sing 74 n n C2 H21 CIT sing 75 n n C2 H22 CIT sing 76 n n C3 O7 CIT sing 77 n n C3 C4 CIT sing 78 n n C3 C6 CIT sing 79 n n O7 HO7 CIT sing 80 n n C4 C5 CIT sing 81 n n C4 H41 CIT sing 82 n n C4 H42 CIT sing 83 n n C5 O3 CIT doub 84 n n C5 O4 CIT sing 85 n n O4 HO4 CIT sing 86 n n C6 O5 CIT doub 87 n n C6 O6 CIT sing 88 n n O6 HO6 CIT sing 89 n n # _atom_sites.entry_id 4ZBE _atom_sites.fract_transf_matrix[1][1] 0.019487 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014994 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01366 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CIT A 1 301 1 CIT CIT . C 3 NXL A 1 302 2 NXL DRG . D 4 HOH A 1 401 64 HOH HOH . D 4 HOH A 2 402 300 HOH HOH . D 4 HOH A 3 403 86 HOH HOH . D 4 HOH A 4 404 118 HOH HOH . D 4 HOH A 5 405 3 HOH HOH . D 4 HOH A 6 406 433 HOH HOH . D 4 HOH A 7 407 291 HOH HOH . D 4 HOH A 8 408 47 HOH HOH . D 4 HOH A 9 409 424 HOH HOH . D 4 HOH A 10 410 102 HOH HOH . D 4 HOH A 11 411 68 HOH HOH . D 4 HOH A 12 412 19 HOH HOH . D 4 HOH A 13 413 175 HOH HOH . D 4 HOH A 14 414 121 HOH HOH . D 4 HOH A 15 415 212 HOH HOH . D 4 HOH A 16 416 145 HOH HOH . D 4 HOH A 17 417 7 HOH HOH . D 4 HOH A 18 418 183 HOH HOH . D 4 HOH A 19 419 264 HOH HOH . D 4 HOH A 20 420 48 HOH HOH . D 4 HOH A 21 421 74 HOH HOH . D 4 HOH A 22 422 2 HOH HOH . D 4 HOH A 23 423 199 HOH HOH . D 4 HOH A 24 424 406 HOH HOH . D 4 HOH A 25 425 178 HOH HOH . D 4 HOH A 26 426 261 HOH HOH . D 4 HOH A 27 427 45 HOH HOH . D 4 HOH A 28 428 294 HOH HOH . D 4 HOH A 29 429 6 HOH HOH . D 4 HOH A 30 430 30 HOH HOH . D 4 HOH A 31 431 160 HOH HOH . D 4 HOH A 32 432 27 HOH HOH . D 4 HOH A 33 433 430 HOH HOH . D 4 HOH A 34 434 34 HOH HOH . D 4 HOH A 35 435 150 HOH HOH . D 4 HOH A 36 436 76 HOH HOH . D 4 HOH A 37 437 97 HOH HOH . D 4 HOH A 38 438 51 HOH HOH . D 4 HOH A 39 439 218 HOH HOH . D 4 HOH A 40 440 42 HOH HOH . D 4 HOH A 41 441 125 HOH HOH . D 4 HOH A 42 442 107 HOH HOH . D 4 HOH A 43 443 113 HOH HOH . D 4 HOH A 44 444 434 HOH HOH . D 4 HOH A 45 445 109 HOH HOH . D 4 HOH A 46 446 176 HOH HOH . D 4 HOH A 47 447 277 HOH HOH . D 4 HOH A 48 448 137 HOH HOH . D 4 HOH A 49 449 290 HOH HOH . D 4 HOH A 50 450 54 HOH HOH . D 4 HOH A 51 451 84 HOH HOH . D 4 HOH A 52 452 63 HOH HOH . D 4 HOH A 53 453 56 HOH HOH . D 4 HOH A 54 454 155 HOH HOH . D 4 HOH A 55 455 95 HOH HOH . D 4 HOH A 56 456 22 HOH HOH . D 4 HOH A 57 457 126 HOH HOH . D 4 HOH A 58 458 435 HOH HOH . D 4 HOH A 59 459 88 HOH HOH . D 4 HOH A 60 460 181 HOH HOH . D 4 HOH A 61 461 421 HOH HOH . D 4 HOH A 62 462 164 HOH HOH . D 4 HOH A 63 463 62 HOH HOH . D 4 HOH A 64 464 138 HOH HOH . D 4 HOH A 65 465 247 HOH HOH . D 4 HOH A 66 466 144 HOH HOH . D 4 HOH A 67 467 31 HOH HOH . D 4 HOH A 68 468 33 HOH HOH . D 4 HOH A 69 469 93 HOH HOH . D 4 HOH A 70 470 158 HOH HOH . D 4 HOH A 71 471 94 HOH HOH . D 4 HOH A 72 472 46 HOH HOH . D 4 HOH A 73 473 55 HOH HOH . D 4 HOH A 74 474 87 HOH HOH . D 4 HOH A 75 475 12 HOH HOH . D 4 HOH A 76 476 43 HOH HOH . D 4 HOH A 77 477 21 HOH HOH . D 4 HOH A 78 478 53 HOH HOH . D 4 HOH A 79 479 242 HOH HOH . D 4 HOH A 80 480 303 HOH HOH . D 4 HOH A 81 481 29 HOH HOH . D 4 HOH A 82 482 16 HOH HOH . D 4 HOH A 83 483 79 HOH HOH . D 4 HOH A 84 484 96 HOH HOH . D 4 HOH A 85 485 163 HOH HOH . D 4 HOH A 86 486 80 HOH HOH . D 4 HOH A 87 487 35 HOH HOH . D 4 HOH A 88 488 405 HOH HOH . D 4 HOH A 89 489 50 HOH HOH . D 4 HOH A 90 490 364 HOH HOH . D 4 HOH A 91 491 263 HOH HOH . D 4 HOH A 92 492 57 HOH HOH . D 4 HOH A 93 493 135 HOH HOH . D 4 HOH A 94 494 238 HOH HOH . D 4 HOH A 95 495 15 HOH HOH . D 4 HOH A 96 496 249 HOH HOH . D 4 HOH A 97 497 8 HOH HOH . D 4 HOH A 98 498 122 HOH HOH . D 4 HOH A 99 499 298 HOH HOH . D 4 HOH A 100 500 26 HOH HOH . D 4 HOH A 101 501 110 HOH HOH . D 4 HOH A 102 502 4 HOH HOH . D 4 HOH A 103 503 127 HOH HOH . D 4 HOH A 104 504 115 HOH HOH . D 4 HOH A 105 505 24 HOH HOH . D 4 HOH A 106 506 408 HOH HOH . D 4 HOH A 107 507 103 HOH HOH . D 4 HOH A 108 508 81 HOH HOH . D 4 HOH A 109 509 32 HOH HOH . D 4 HOH A 110 510 111 HOH HOH . D 4 HOH A 111 511 246 HOH HOH . D 4 HOH A 112 512 124 HOH HOH . D 4 HOH A 113 513 99 HOH HOH . D 4 HOH A 114 514 213 HOH HOH . D 4 HOH A 115 515 269 HOH HOH . D 4 HOH A 116 516 14 HOH HOH . D 4 HOH A 117 517 234 HOH HOH . D 4 HOH A 118 518 154 HOH HOH . D 4 HOH A 119 519 141 HOH HOH . D 4 HOH A 120 520 309 HOH HOH . D 4 HOH A 121 521 18 HOH HOH . D 4 HOH A 122 522 240 HOH HOH . D 4 HOH A 123 523 72 HOH HOH . D 4 HOH A 124 524 89 HOH HOH . D 4 HOH A 125 525 248 HOH HOH . D 4 HOH A 126 526 275 HOH HOH . D 4 HOH A 127 527 60 HOH HOH . D 4 HOH A 128 528 253 HOH HOH . D 4 HOH A 129 529 195 HOH HOH . D 4 HOH A 130 530 17 HOH HOH . D 4 HOH A 131 531 409 HOH HOH . D 4 HOH A 132 532 130 HOH HOH . D 4 HOH A 133 533 83 HOH HOH . D 4 HOH A 134 534 306 HOH HOH . D 4 HOH A 135 535 119 HOH HOH . D 4 HOH A 136 536 152 HOH HOH . D 4 HOH A 137 537 186 HOH HOH . D 4 HOH A 138 538 10 HOH HOH . D 4 HOH A 139 539 78 HOH HOH . D 4 HOH A 140 540 436 HOH HOH . D 4 HOH A 141 541 142 HOH HOH . D 4 HOH A 142 542 98 HOH HOH . D 4 HOH A 143 543 194 HOH HOH . D 4 HOH A 144 544 92 HOH HOH . D 4 HOH A 145 545 105 HOH HOH . D 4 HOH A 146 546 214 HOH HOH . D 4 HOH A 147 547 161 HOH HOH . D 4 HOH A 148 548 41 HOH HOH . D 4 HOH A 149 549 23 HOH HOH . D 4 HOH A 150 550 254 HOH HOH . D 4 HOH A 151 551 407 HOH HOH . D 4 HOH A 152 552 104 HOH HOH . D 4 HOH A 153 553 71 HOH HOH . D 4 HOH A 154 554 411 HOH HOH . D 4 HOH A 155 555 70 HOH HOH . D 4 HOH A 156 556 90 HOH HOH . D 4 HOH A 157 557 65 HOH HOH . D 4 HOH A 158 558 82 HOH HOH . D 4 HOH A 159 559 11 HOH HOH . D 4 HOH A 160 560 190 HOH HOH . D 4 HOH A 161 561 39 HOH HOH . D 4 HOH A 162 562 36 HOH HOH . D 4 HOH A 163 563 322 HOH HOH . D 4 HOH A 164 564 423 HOH HOH . D 4 HOH A 165 565 58 HOH HOH . D 4 HOH A 166 566 38 HOH HOH . D 4 HOH A 167 567 40 HOH HOH . D 4 HOH A 168 568 1 HOH HOH . D 4 HOH A 169 569 420 HOH HOH . D 4 HOH A 170 570 239 HOH HOH . D 4 HOH A 171 571 200 HOH HOH . D 4 HOH A 172 572 244 HOH HOH . D 4 HOH A 173 573 108 HOH HOH . D 4 HOH A 174 574 202 HOH HOH . D 4 HOH A 175 575 75 HOH HOH . D 4 HOH A 176 576 153 HOH HOH . D 4 HOH A 177 577 91 HOH HOH . D 4 HOH A 178 578 5 HOH HOH . D 4 HOH A 179 579 28 HOH HOH . D 4 HOH A 180 580 129 HOH HOH . D 4 HOH A 181 581 101 HOH HOH . D 4 HOH A 182 582 100 HOH HOH . D 4 HOH A 183 583 61 HOH HOH . D 4 HOH A 184 584 173 HOH HOH . D 4 HOH A 185 585 267 HOH HOH . D 4 HOH A 186 586 52 HOH HOH . D 4 HOH A 187 587 281 HOH HOH . D 4 HOH A 188 588 189 HOH HOH . D 4 HOH A 189 589 209 HOH HOH . D 4 HOH A 190 590 66 HOH HOH . D 4 HOH A 191 591 180 HOH HOH . D 4 HOH A 192 592 422 HOH HOH . D 4 HOH A 193 593 73 HOH HOH . D 4 HOH A 194 594 257 HOH HOH . D 4 HOH A 195 595 196 HOH HOH . D 4 HOH A 196 596 265 HOH HOH . D 4 HOH A 197 597 201 HOH HOH . D 4 HOH A 198 598 182 HOH HOH . D 4 HOH A 199 599 114 HOH HOH . D 4 HOH A 200 600 425 HOH HOH . D 4 HOH A 201 601 385 HOH HOH . D 4 HOH A 202 602 44 HOH HOH . D 4 HOH A 203 603 188 HOH HOH . D 4 HOH A 204 604 387 HOH HOH . D 4 HOH A 205 605 140 HOH HOH . D 4 HOH A 206 606 382 HOH HOH . D 4 HOH A 207 607 378 HOH HOH . D 4 HOH A 208 608 123 HOH HOH . D 4 HOH A 209 609 147 HOH HOH . D 4 HOH A 210 610 167 HOH HOH . D 4 HOH A 211 611 49 HOH HOH . D 4 HOH A 212 612 13 HOH HOH . D 4 HOH A 213 613 384 HOH HOH . D 4 HOH A 214 614 428 HOH HOH . D 4 HOH A 215 615 184 HOH HOH . D 4 HOH A 216 616 169 HOH HOH . D 4 HOH A 217 617 9 HOH HOH . D 4 HOH A 218 618 172 HOH HOH . D 4 HOH A 219 619 223 HOH HOH . D 4 HOH A 220 620 231 HOH HOH . D 4 HOH A 221 621 217 HOH HOH . D 4 HOH A 222 622 427 HOH HOH . D 4 HOH A 223 623 187 HOH HOH . D 4 HOH A 224 624 106 HOH HOH . D 4 HOH A 225 625 220 HOH HOH . D 4 HOH A 226 626 69 HOH HOH . D 4 HOH A 227 627 429 HOH HOH . D 4 HOH A 228 628 219 HOH HOH . D 4 HOH A 229 629 432 HOH HOH . D 4 HOH A 230 630 67 HOH HOH . D 4 HOH A 231 631 388 HOH HOH . D 4 HOH A 232 632 171 HOH HOH . D 4 HOH A 233 633 151 HOH HOH . D 4 HOH A 234 634 222 HOH HOH . D 4 HOH A 235 635 136 HOH HOH . D 4 HOH A 236 636 431 HOH HOH . D 4 HOH A 237 637 128 HOH HOH . D 4 HOH A 238 638 157 HOH HOH . D 4 HOH A 239 639 166 HOH HOH . D 4 HOH A 240 640 386 HOH HOH . D 4 HOH A 241 641 225 HOH HOH . D 4 HOH A 242 642 228 HOH HOH . D 4 HOH A 243 643 120 HOH HOH . D 4 HOH A 244 644 426 HOH HOH . D 4 HOH A 245 645 221 HOH HOH . D 4 HOH A 246 646 146 HOH HOH . D 4 HOH A 247 647 148 HOH HOH . D 4 HOH A 248 648 198 HOH HOH . D 4 HOH A 249 649 159 HOH HOH . D 4 HOH A 250 650 391 HOH HOH . D 4 HOH A 251 651 390 HOH HOH . D 4 HOH A 252 652 85 HOH HOH . D 4 HOH A 253 653 215 HOH HOH . D 4 HOH A 254 654 165 HOH HOH . D 4 HOH A 255 655 116 HOH HOH . D 4 HOH A 256 656 132 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CIT . . . B 2 2.529 -10.173 26.207 1 47.85 ? C1 CIT 301 A 1 HETATM 2 O O1 CIT . . . B 2 2.766 -11.086 25.403 1 49.19 ? O1 CIT 301 A 1 HETATM 3 O O2 CIT . . . B 2 1.395 -9.674 26.352 1 52.52 ? O2 CIT 301 A 1 HETATM 4 C C2 CIT . . . B 2 3.624 -9.596 27.066 1 51.12 ? C2 CIT 301 A 1 HETATM 5 C C3 CIT . . . B 2 4.84 -10.482 27.258 1 41.12 ? C3 CIT 301 A 1 HETATM 6 O O7 CIT . . . B 2 5.516 -10.527 26.032 1 42.58 ? O7 CIT 301 A 1 HETATM 7 C C4 CIT . . . B 2 5.774 -9.797 28.202 1 48.04 ? C4 CIT 301 A 1 HETATM 8 C C5 CIT . . . B 2 7.026 -10.555 28.573 1 50.06 ? C5 CIT 301 A 1 HETATM 9 O O3 CIT . . . B 2 7.668 -11.188 27.704 1 47.72 ? O3 CIT 301 A 1 HETATM 10 O O4 CIT . . . B 2 7.395 -10.467 29.77 1 68.61 ? O4 CIT 301 A 1 HETATM 11 C C6 CIT . . . B 2 4.498 -11.842 27.872 1 55.5 ? C6 CIT 301 A 1 HETATM 12 O O5 CIT . . . B 2 5.17 -12.859 27.578 1 51.76 ? O5 CIT 301 A 1 HETATM 13 O O6 CIT . . . B 2 3.56 -11.901 28.698 1 52.38 ? O6 CIT 301 A 1 # _model_server_stats.io_time_ms 66 _model_server_stats.parse_time_ms 25 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 343 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 13 #