data_4ZBQ # _model_server_result.job_id PMWn34hIZ16ENNHrXUlbHg _model_server_result.datetime_utc '2024-11-23 23:25:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4zbq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":604}' # _entry.id 4ZBQ # _exptl.entry_id 4ZBQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 118.088 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SUCCINIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4ZBQ _cell.length_a 93.58 _cell.length_b 93.58 _cell.length_c 141.07 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4ZBQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 61' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 53 A CYS 53 1_555 A SG CYS 62 A CYS 62 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.09 ? disulf ? disulf2 A SG CYS 75 A CYS 75 1_555 A SG CYS 91 A CYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.101 ? disulf ? disulf3 A SG CYS 90 A CYS 90 1_555 A SG CYS 101 A CYS 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.077 ? disulf ? disulf4 A SG CYS 123 A CYS 123 1_555 A SG CYS 168 A CYS 168 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.074 ? disulf ? disulf5 A SG CYS 167 A CYS 167 1_555 A SG CYS 176 A CYS 176 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? disulf ? disulf6 A SG CYS 199 A CYS 199 1_555 A SG CYS 245 A CYS 245 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? disulf ? disulf7 A SG CYS 244 A CYS 244 1_555 A SG CYS 252 A CYS 252 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? disulf ? disulf8 A SG CYS 264 A CYS 264 1_555 A SG CYS 278 A CYS 278 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? disulf ? disulf9 A SG CYS 277 A CYS 277 1_555 A SG CYS 288 A CYS 288 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.135 ? disulf ? disulf10 A SG CYS 315 A CYS 315 1_555 A SG CYS 360 A CYS 360 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? disulf ? disulf11 A SG CYS 359 A CYS 359 1_555 A SG CYS 368 A CYS 368 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.106 ? disulf ? disulf12 A SG CYS 391 A CYS 391 1_555 A SG CYS 437 A CYS 437 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.001 ? disulf ? disulf13 A SG CYS 436 A CYS 436 1_555 A SG CYS 447 A CYS 447 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? disulf ? disulf14 A SG CYS 460 A CYS 460 1_555 A SG CYS 476 A CYS 476 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.005 ? disulf ? disulf15 A SG CYS 475 A CYS 475 1_555 A SG CYS 486 A CYS 486 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.208 ? disulf ? disulf16 A SG CYS 513 A CYS 513 1_555 A SG CYS 558 A CYS 558 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.079 ? disulf ? disulf17 A SG CYS 557 A CYS 557 1_555 A SG CYS 566 A CYS 566 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.181 ? # _chem_comp.formula 'C4 H6 O4' _chem_comp.formula_weight 118.088 _chem_comp.id SIN _chem_comp.mon_nstd_flag . _chem_comp.name 'SUCCINIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 SIN doub 322 n n C1 O2 SIN sing 323 n n C1 C2 SIN sing 324 n n O2 HO2 SIN sing 325 n n C2 C3 SIN sing 326 n n C2 H21 SIN sing 327 n n C2 H22 SIN sing 328 n n C3 C4 SIN sing 329 n n C3 H31 SIN sing 330 n n C3 H32 SIN sing 331 n n C4 O3 SIN doub 332 n n C4 O4 SIN sing 333 n n O4 HO4 SIN sing 334 n n # _atom_sites.entry_id 4ZBQ _atom_sites.fract_transf_matrix[1][1] 0.010686 _atom_sites.fract_transf_matrix[1][2] 0.00617 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012339 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007089 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 DIF A 1 601 1 DIF DIF . C 2 DIF A 1 602 2 DIF DIF . D 3 ACT A 1 603 1 ACT ACT . E 4 SIN A 1 604 2 SIN SIN . F 3 ACT A 1 605 3 ACT ACT . G 5 LMR A 1 606 5 LMR LMR . H 6 TLA A 1 607 1 TLA TLA . I 7 HOH A 1 701 277 HOH HOH . I 7 HOH A 2 702 97 HOH HOH . I 7 HOH A 3 703 77 HOH HOH . I 7 HOH A 4 704 267 HOH HOH . I 7 HOH A 5 705 235 HOH HOH . I 7 HOH A 6 706 22 HOH HOH . I 7 HOH A 7 707 198 HOH HOH . I 7 HOH A 8 708 178 HOH HOH . I 7 HOH A 9 709 33 HOH HOH . I 7 HOH A 10 710 233 HOH HOH . I 7 HOH A 11 711 10 HOH HOH . I 7 HOH A 12 712 159 HOH HOH . I 7 HOH A 13 713 66 HOH HOH . I 7 HOH A 14 714 21 HOH HOH . I 7 HOH A 15 715 199 HOH HOH . I 7 HOH A 16 716 185 HOH HOH . I 7 HOH A 17 717 177 HOH HOH . I 7 HOH A 18 718 168 HOH HOH . I 7 HOH A 19 719 263 HOH HOH . I 7 HOH A 20 720 93 HOH HOH . I 7 HOH A 21 721 148 HOH HOH . I 7 HOH A 22 722 261 HOH HOH . I 7 HOH A 23 723 25 HOH HOH . I 7 HOH A 24 724 169 HOH HOH . I 7 HOH A 25 725 117 HOH HOH . I 7 HOH A 26 726 98 HOH HOH . I 7 HOH A 27 727 142 HOH HOH . I 7 HOH A 28 728 166 HOH HOH . I 7 HOH A 29 729 57 HOH HOH . I 7 HOH A 30 730 81 HOH HOH . I 7 HOH A 31 731 124 HOH HOH . I 7 HOH A 32 732 250 HOH HOH . I 7 HOH A 33 733 96 HOH HOH . I 7 HOH A 34 734 7 HOH HOH . I 7 HOH A 35 735 106 HOH HOH . I 7 HOH A 36 736 140 HOH HOH . I 7 HOH A 37 737 2 HOH HOH . I 7 HOH A 38 738 83 HOH HOH . I 7 HOH A 39 739 29 HOH HOH . I 7 HOH A 40 740 109 HOH HOH . I 7 HOH A 41 741 91 HOH HOH . I 7 HOH A 42 742 3 HOH HOH . I 7 HOH A 43 743 13 HOH HOH . I 7 HOH A 44 744 104 HOH HOH . I 7 HOH A 45 745 160 HOH HOH . I 7 HOH A 46 746 165 HOH HOH . I 7 HOH A 47 747 108 HOH HOH . I 7 HOH A 48 748 69 HOH HOH . I 7 HOH A 49 749 149 HOH HOH . I 7 HOH A 50 750 129 HOH HOH . I 7 HOH A 51 751 162 HOH HOH . I 7 HOH A 52 752 121 HOH HOH . I 7 HOH A 53 753 46 HOH HOH . I 7 HOH A 54 754 101 HOH HOH . I 7 HOH A 55 755 152 HOH HOH . I 7 HOH A 56 756 35 HOH HOH . I 7 HOH A 57 757 43 HOH HOH . I 7 HOH A 58 758 120 HOH HOH . I 7 HOH A 59 759 88 HOH HOH . I 7 HOH A 60 760 89 HOH HOH . I 7 HOH A 61 761 103 HOH HOH . I 7 HOH A 62 762 6 HOH HOH . I 7 HOH A 63 763 111 HOH HOH . I 7 HOH A 64 764 8 HOH HOH . I 7 HOH A 65 765 86 HOH HOH . I 7 HOH A 66 766 174 HOH HOH . I 7 HOH A 67 767 19 HOH HOH . I 7 HOH A 68 768 90 HOH HOH . I 7 HOH A 69 769 99 HOH HOH . I 7 HOH A 70 770 100 HOH HOH . I 7 HOH A 71 771 164 HOH HOH . I 7 HOH A 72 772 26 HOH HOH . I 7 HOH A 73 773 156 HOH HOH . I 7 HOH A 74 774 84 HOH HOH . I 7 HOH A 75 775 5 HOH HOH . I 7 HOH A 76 776 49 HOH HOH . I 7 HOH A 77 777 175 HOH HOH . I 7 HOH A 78 778 119 HOH HOH . I 7 HOH A 79 779 94 HOH HOH . I 7 HOH A 80 780 208 HOH HOH . I 7 HOH A 81 781 95 HOH HOH . I 7 HOH A 82 782 116 HOH HOH . I 7 HOH A 83 783 145 HOH HOH . I 7 HOH A 84 784 87 HOH HOH . I 7 HOH A 85 785 139 HOH HOH . I 7 HOH A 86 786 36 HOH HOH . I 7 HOH A 87 787 102 HOH HOH . I 7 HOH A 88 788 147 HOH HOH . I 7 HOH A 89 789 153 HOH HOH . I 7 HOH A 90 790 31 HOH HOH . I 7 HOH A 91 791 112 HOH HOH . I 7 HOH A 92 792 62 HOH HOH . I 7 HOH A 93 793 187 HOH HOH . I 7 HOH A 94 794 27 HOH HOH . I 7 HOH A 95 795 242 HOH HOH . I 7 HOH A 96 796 47 HOH HOH . I 7 HOH A 97 797 134 HOH HOH . I 7 HOH A 98 798 157 HOH HOH . I 7 HOH A 99 799 41 HOH HOH . I 7 HOH A 100 800 180 HOH HOH . I 7 HOH A 101 801 193 HOH HOH . I 7 HOH A 102 802 65 HOH HOH . I 7 HOH A 103 803 151 HOH HOH . I 7 HOH A 104 804 30 HOH HOH . I 7 HOH A 105 805 59 HOH HOH . I 7 HOH A 106 806 20 HOH HOH . I 7 HOH A 107 807 113 HOH HOH . I 7 HOH A 108 808 1 HOH HOH . I 7 HOH A 109 809 146 HOH HOH . I 7 HOH A 110 810 132 HOH HOH . I 7 HOH A 111 811 207 HOH HOH . I 7 HOH A 112 812 14 HOH HOH . I 7 HOH A 113 813 24 HOH HOH . I 7 HOH A 114 814 34 HOH HOH . I 7 HOH A 115 815 64 HOH HOH . I 7 HOH A 116 816 78 HOH HOH . I 7 HOH A 117 817 58 HOH HOH . I 7 HOH A 118 818 228 HOH HOH . I 7 HOH A 119 819 76 HOH HOH . I 7 HOH A 120 820 190 HOH HOH . I 7 HOH A 121 821 189 HOH HOH . I 7 HOH A 122 822 23 HOH HOH . I 7 HOH A 123 823 73 HOH HOH . I 7 HOH A 124 824 138 HOH HOH . I 7 HOH A 125 825 118 HOH HOH . I 7 HOH A 126 826 110 HOH HOH . I 7 HOH A 127 827 38 HOH HOH . I 7 HOH A 128 828 234 HOH HOH . I 7 HOH A 129 829 155 HOH HOH . I 7 HOH A 130 830 74 HOH HOH . I 7 HOH A 131 831 16 HOH HOH . I 7 HOH A 132 832 80 HOH HOH . I 7 HOH A 133 833 9 HOH HOH . I 7 HOH A 134 834 150 HOH HOH . I 7 HOH A 135 835 200 HOH HOH . I 7 HOH A 136 836 126 HOH HOH . I 7 HOH A 137 837 276 HOH HOH . I 7 HOH A 138 838 192 HOH HOH . I 7 HOH A 139 839 75 HOH HOH . I 7 HOH A 140 840 130 HOH HOH . I 7 HOH A 141 841 48 HOH HOH . I 7 HOH A 142 842 122 HOH HOH . I 7 HOH A 143 843 188 HOH HOH . I 7 HOH A 144 844 251 HOH HOH . I 7 HOH A 145 845 92 HOH HOH . I 7 HOH A 146 846 141 HOH HOH . I 7 HOH A 147 847 18 HOH HOH . I 7 HOH A 148 848 45 HOH HOH . I 7 HOH A 149 849 161 HOH HOH . I 7 HOH A 150 850 28 HOH HOH . I 7 HOH A 151 851 202 HOH HOH . I 7 HOH A 152 852 39 HOH HOH . I 7 HOH A 153 853 219 HOH HOH . I 7 HOH A 154 854 61 HOH HOH . I 7 HOH A 155 855 217 HOH HOH . I 7 HOH A 156 856 123 HOH HOH . I 7 HOH A 157 857 68 HOH HOH . I 7 HOH A 158 858 12 HOH HOH . I 7 HOH A 159 859 70 HOH HOH . I 7 HOH A 160 860 128 HOH HOH . I 7 HOH A 161 861 184 HOH HOH . I 7 HOH A 162 862 4 HOH HOH . I 7 HOH A 163 863 50 HOH HOH . I 7 HOH A 164 864 195 HOH HOH . I 7 HOH A 165 865 71 HOH HOH . I 7 HOH A 166 866 206 HOH HOH . I 7 HOH A 167 867 32 HOH HOH . I 7 HOH A 168 868 154 HOH HOH . I 7 HOH A 169 869 143 HOH HOH . I 7 HOH A 170 870 79 HOH HOH . I 7 HOH A 171 871 85 HOH HOH . I 7 HOH A 172 872 82 HOH HOH . I 7 HOH A 173 873 11 HOH HOH . I 7 HOH A 174 874 257 HOH HOH . I 7 HOH A 175 875 52 HOH HOH . I 7 HOH A 176 876 53 HOH HOH . I 7 HOH A 177 877 105 HOH HOH . I 7 HOH A 178 878 167 HOH HOH . I 7 HOH A 179 879 170 HOH HOH . I 7 HOH A 180 880 37 HOH HOH . I 7 HOH A 181 881 44 HOH HOH . I 7 HOH A 182 882 51 HOH HOH . I 7 HOH A 183 883 183 HOH HOH . I 7 HOH A 184 884 232 HOH HOH . I 7 HOH A 185 885 63 HOH HOH . I 7 HOH A 186 886 136 HOH HOH . I 7 HOH A 187 887 227 HOH HOH . I 7 HOH A 188 888 131 HOH HOH . I 7 HOH A 189 889 254 HOH HOH . I 7 HOH A 190 890 231 HOH HOH . I 7 HOH A 191 891 270 HOH HOH . I 7 HOH A 192 892 173 HOH HOH . I 7 HOH A 193 893 221 HOH HOH . I 7 HOH A 194 894 172 HOH HOH . I 7 HOH A 195 895 54 HOH HOH . I 7 HOH A 196 896 191 HOH HOH . I 7 HOH A 197 897 182 HOH HOH . I 7 HOH A 198 898 144 HOH HOH . I 7 HOH A 199 899 181 HOH HOH . I 7 HOH A 200 900 205 HOH HOH . I 7 HOH A 201 901 163 HOH HOH . I 7 HOH A 202 902 197 HOH HOH . I 7 HOH A 203 903 171 HOH HOH . I 7 HOH A 204 904 114 HOH HOH . I 7 HOH A 205 905 158 HOH HOH . I 7 HOH A 206 906 135 HOH HOH . I 7 HOH A 207 907 215 HOH HOH . I 7 HOH A 208 908 204 HOH HOH . I 7 HOH A 209 909 15 HOH HOH . I 7 HOH A 210 910 67 HOH HOH . I 7 HOH A 211 911 179 HOH HOH . I 7 HOH A 212 912 56 HOH HOH . I 7 HOH A 213 913 17 HOH HOH . I 7 HOH A 214 914 107 HOH HOH . I 7 HOH A 215 915 42 HOH HOH . I 7 HOH A 216 916 125 HOH HOH . I 7 HOH A 217 917 137 HOH HOH . I 7 HOH A 218 918 72 HOH HOH . I 7 HOH A 219 919 55 HOH HOH . I 7 HOH A 220 920 229 HOH HOH . I 7 HOH A 221 921 133 HOH HOH . I 7 HOH A 222 922 210 HOH HOH . I 7 HOH A 223 923 201 HOH HOH . I 7 HOH A 224 924 40 HOH HOH . I 7 HOH A 225 925 236 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 SIN . . . E 4 47.759 21.093 79.214 1 68.92 ? C1 SIN 604 A 1 HETATM 2 O O1 SIN . . . E 4 46.618 20.759 78.708 1 68.08 ? O1 SIN 604 A 1 HETATM 3 O O2 SIN . . . E 4 48.313 22.215 79.085 1 62.64 ? O2 SIN 604 A 1 HETATM 4 C C2 SIN . . . E 4 48.559 20.059 79.967 1 60.83 ? C2 SIN 604 A 1 HETATM 5 C C3 SIN . . . E 4 48.484 20.03 81.489 1 67.14 ? C3 SIN 604 A 1 HETATM 6 C C4 SIN . . . E 4 48.264 18.631 82.043 1 69.54 ? C4 SIN 604 A 1 HETATM 7 O O3 SIN . . . E 4 48.022 17.68 81.273 1 63.09 ? O3 SIN 604 A 1 HETATM 8 O O4 SIN . . . E 4 48.329 18.457 83.287 1 74.38 ? O4 SIN 604 A 1 # _model_server_stats.io_time_ms 32 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 657 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 8 #