data_4ZCF # _model_server_result.job_id OBm3Pdvj5jobHQEfoKlSEQ _model_server_result.datetime_utc '2024-10-28 02:23:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4zcf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":702}' # _entry.id 4ZCF # _exptl.entry_id 4ZCF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 54.938 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MANGANESE (II) ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4ZCF _cell.length_a 101.838 _cell.length_b 101.838 _cell.length_c 533.031 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4ZCF _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 F N N ? 5 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 201 A HIS 201 1_555 F MN MN . A MN 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.656 ? metalc ? metalc2 A OE2 GLU 213 A GLU 213 1_555 G MN MN . A MN 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.363 ? metalc ? metalc3 G MN MN . A MN 702 1_555 C NE2 HIS 168 C HIS 168 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.741 ? metalc ? metalc4 K O HOH . B HOH 717 1_555 I CA CA . D CA 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.349 ? metalc ? metalc5 K O HOH . B HOH 723 1_555 I CA CA . D CA 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.374 ? metalc ? metalc6 D OP1 DA 8 D DA 8 1_555 I CA CA . D CA 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.146 ? metalc ? metalc7 I CA CA . D CA 101 1_555 M O HOH . D HOH 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.104 ? hydrog WATSON-CRICK hydrog1 D N3 DT 2 D DT 2 1_555 E N1 DA 20 E DA 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 D O4 DT 2 D DT 2 1_555 E N6 DA 20 E DA 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 D N1 DA 3 D DA 3 1_555 E N3 DT 19 E DT 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 D N6 DA 3 D DA 3 1_555 E O4 DT 19 E DT 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 D N3 DC 4 D DC 4 1_555 E N1 DG 18 E DG 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 D N4 DC 4 D DC 4 1_555 E O6 DG 18 E DG 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 D O2 DC 4 D DC 4 1_555 E N2 DG 18 E DG 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 D N1 DA 5 D DA 5 1_555 E N3 DT 17 E DT 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 D N6 DA 5 D DA 5 1_555 E O4 DT 17 E DT 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 D N1 DG 6 D DG 6 1_555 E N3 DC 16 E DC 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 D N2 DG 6 D DG 6 1_555 E O2 DC 16 E DC 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 D O6 DG 6 D DG 6 1_555 E N4 DC 16 E DC 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 D N3 DC 7 D DC 7 1_555 E N1 DG 15 E DG 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 D N4 DC 7 D DC 7 1_555 E O6 DG 15 E DG 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 D O2 DC 7 D DC 7 1_555 E N2 DG 15 E DG 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 D N1 DG 9 D DG 9 1_555 E N3 DC 13 E DC 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 D N2 DG 9 D DG 9 1_555 E O2 DC 13 E DC 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 D O6 DG 9 D DG 9 1_555 E N4 DC 13 E DC 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 D N3 DT 10 D DT 10 1_555 E N1 DA 12 E DA 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 D O4 DT 10 D DT 10 1_555 E N6 DA 12 E DA 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog21 D N1 DA 11 D DA 11 1_555 E N3 DT 11 E DT 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog22 D N6 DA 11 D DA 11 1_555 E O4 DT 11 E DT 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog23 D N1 DG 12 D DG 12 1_555 E N3 DC 10 E DC 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog24 D N2 DG 12 D DG 12 1_555 E O2 DC 10 E DC 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog25 D O6 DG 12 D DG 12 1_555 E N4 DC 10 E DC 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog26 D N1 DA 13 D DA 13 1_555 E N3 DT 9 E DT 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog27 D N6 DA 13 D DA 13 1_555 E O4 DT 9 E DT 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog28 D N3 DC 14 D DC 14 1_555 E N1 DG 8 E DG 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog29 D N4 DC 14 D DC 14 1_555 E O6 DG 8 E DG 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog30 D O2 DC 14 D DC 14 1_555 E N2 DG 8 E DG 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog31 D N3 DT 15 D DT 15 1_555 E N1 DA 7 E DA 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog32 D O4 DT 15 D DT 15 1_555 E N6 DA 7 E DA 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog33 D N1 DA 16 D DA 16 1_555 E N3 DT 6 E DT 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog34 D N6 DA 16 D DA 16 1_555 E O4 DT 6 E DT 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog35 D N3 DT 17 D DT 17 1_555 E N1 DA 5 E DA 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog36 D O4 DT 17 D DT 17 1_555 E N6 DA 5 E DA 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog37 D N1 DG 18 D DG 18 1_555 E N3 DC 4 E DC 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog38 D N2 DG 18 D DG 18 1_555 E O2 DC 4 E DC 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog39 D O6 DG 18 D DG 18 1_555 E N4 DC 4 E DC 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog40 D N1 DA 19 D DA 19 1_555 E N3 DT 3 E DT 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog41 D N6 DA 19 D DA 19 1_555 E O4 DT 3 E DT 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog42 D N3 DT 20 D DT 20 1_555 E N1 DA 2 E DA 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog43 D O4 DT 20 D DT 20 1_555 E N6 DA 2 E DA 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'Mn 2' _chem_comp.formula_weight 54.938 _chem_comp.id MN _chem_comp.mon_nstd_flag . _chem_comp.name 'MANGANESE (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4ZCF _atom_sites.fract_transf_matrix[1][1] 0.00982 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00982 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.001876 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 5 MN A 1 701 1 MN MN . G 5 MN A 1 702 1 MN MN . H 6 AMP C 1 1001 1 AMP AMP . I 7 CA D 1 101 1 CA CA . J 8 HOH A 1 801 98 HOH HOH . J 8 HOH A 2 802 99 HOH HOH . J 8 HOH A 3 803 92 HOH HOH . J 8 HOH A 4 804 46 HOH HOH . J 8 HOH A 5 805 96 HOH HOH . J 8 HOH A 6 806 16 HOH HOH . J 8 HOH A 7 807 4 HOH HOH . J 8 HOH A 8 808 57 HOH HOH . J 8 HOH A 9 809 100 HOH HOH . J 8 HOH A 10 810 19 HOH HOH . J 8 HOH A 11 811 22 HOH HOH . J 8 HOH A 12 812 18 HOH HOH . J 8 HOH A 13 813 101 HOH HOH . J 8 HOH A 14 814 102 HOH HOH . J 8 HOH A 15 815 20 HOH HOH . J 8 HOH A 16 816 72 HOH HOH . J 8 HOH A 17 817 50 HOH HOH . J 8 HOH A 18 818 80 HOH HOH . J 8 HOH A 19 819 45 HOH HOH . J 8 HOH A 20 820 21 HOH HOH . J 8 HOH A 21 821 49 HOH HOH . J 8 HOH A 22 822 17 HOH HOH . J 8 HOH A 23 823 60 HOH HOH . J 8 HOH A 24 824 95 HOH HOH . J 8 HOH A 25 825 10 HOH HOH . J 8 HOH A 26 826 42 HOH HOH . J 8 HOH A 27 827 55 HOH HOH . J 8 HOH A 28 828 97 HOH HOH . J 8 HOH A 29 829 66 HOH HOH . J 8 HOH A 30 830 41 HOH HOH . J 8 HOH A 31 831 12 HOH HOH . J 8 HOH A 32 832 6 HOH HOH . J 8 HOH A 33 833 70 HOH HOH . J 8 HOH A 34 834 25 HOH HOH . J 8 HOH A 35 835 56 HOH HOH . J 8 HOH A 36 836 75 HOH HOH . J 8 HOH A 37 837 93 HOH HOH . J 8 HOH A 38 838 5 HOH HOH . J 8 HOH A 39 839 13 HOH HOH . J 8 HOH A 40 840 1 HOH HOH . J 8 HOH A 41 841 76 HOH HOH . J 8 HOH A 42 842 34 HOH HOH . J 8 HOH A 43 843 82 HOH HOH . K 8 HOH B 1 701 94 HOH HOH . K 8 HOH B 2 702 7 HOH HOH . K 8 HOH B 3 703 28 HOH HOH . K 8 HOH B 4 704 31 HOH HOH . K 8 HOH B 5 705 89 HOH HOH . K 8 HOH B 6 706 68 HOH HOH . K 8 HOH B 7 707 3 HOH HOH . K 8 HOH B 8 708 9 HOH HOH . K 8 HOH B 9 709 85 HOH HOH . K 8 HOH B 10 710 47 HOH HOH . K 8 HOH B 11 711 36 HOH HOH . K 8 HOH B 12 712 35 HOH HOH . K 8 HOH B 13 713 67 HOH HOH . K 8 HOH B 14 714 8 HOH HOH . K 8 HOH B 15 715 52 HOH HOH . K 8 HOH B 16 716 54 HOH HOH . K 8 HOH B 17 717 39 HOH HOH . K 8 HOH B 18 718 26 HOH HOH . K 8 HOH B 19 719 11 HOH HOH . K 8 HOH B 20 720 84 HOH HOH . K 8 HOH B 21 721 29 HOH HOH . K 8 HOH B 22 722 2 HOH HOH . K 8 HOH B 23 723 40 HOH HOH . K 8 HOH B 24 724 27 HOH HOH . K 8 HOH B 25 725 51 HOH HOH . K 8 HOH B 26 726 77 HOH HOH . K 8 HOH B 27 727 88 HOH HOH . K 8 HOH B 28 728 86 HOH HOH . K 8 HOH B 29 729 15 HOH HOH . K 8 HOH B 30 730 53 HOH HOH . K 8 HOH B 31 731 30 HOH HOH . K 8 HOH B 32 732 33 HOH HOH . K 8 HOH B 33 733 62 HOH HOH . K 8 HOH B 34 734 58 HOH HOH . K 8 HOH B 35 735 71 HOH HOH . K 8 HOH B 36 736 64 HOH HOH . L 8 HOH C 1 1101 69 HOH HOH . L 8 HOH C 2 1102 87 HOH HOH . L 8 HOH C 3 1103 32 HOH HOH . L 8 HOH C 4 1104 59 HOH HOH . M 8 HOH D 1 201 91 HOH HOH . M 8 HOH D 2 202 38 HOH HOH . M 8 HOH D 3 203 90 HOH HOH . M 8 HOH D 4 204 44 HOH HOH . M 8 HOH D 5 205 14 HOH HOH . M 8 HOH D 6 206 43 HOH HOH . M 8 HOH D 7 207 37 HOH HOH . N 8 HOH E 1 101 23 HOH HOH . N 8 HOH E 2 102 103 HOH HOH . N 8 HOH E 3 103 24 HOH HOH . N 8 HOH E 4 104 63 HOH HOH . N 8 HOH E 5 105 81 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MN _atom_site.label_atom_id MN _atom_site.label_comp_id MN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id G _atom_site.label_entity_id 5 _atom_site.Cartn_x 82.576 _atom_site.Cartn_y 41.521 _atom_site.Cartn_z 244.137 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 75.95 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MN _atom_site.auth_comp_id MN _atom_site.auth_seq_id 702 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 59 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 24 _model_server_stats.query_time_ms 223 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #