data_4ZCP # _model_server_result.job_id KbnXl3cbop2bSiRcSDxyzA _model_server_result.datetime_utc '2024-11-25 10:37:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4zcp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":801}' # _entry.id 4ZCP # _exptl.entry_id 4ZCP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 323.197 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "CYTIDINE-5'-MONOPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4ZCP _cell.length_a 50.52 _cell.length_b 69.3 _cell.length_c 116.44 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4ZCP _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C 1 1 A,B,C 1 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_595 -x,-y+4,z -1 0 0 0 -1 0 0 0 1 0 277.2 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C9 H14 N3 O8 P' _chem_comp.formula_weight 323.197 _chem_comp.id C5P _chem_comp.mon_nstd_flag . _chem_comp.name "CYTIDINE-5'-MONOPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O3P P C5P sing 70 n n O3P HOP3 C5P sing 71 n n P O1P C5P doub 72 n n P O2P C5P sing 73 n n P O5' C5P sing 74 n n O2P HOP2 C5P sing 75 n n O5' C5' C5P sing 76 n n C5' C4' C5P sing 77 n n C5' "H5'1" C5P sing 78 n n C5' "H5'2" C5P sing 79 n n C4' O4' C5P sing 80 n n C4' C3' C5P sing 81 n n C4' H4' C5P sing 82 n n O4' C1' C5P sing 83 n n C3' O3' C5P sing 84 n n C3' C2' C5P sing 85 n n C3' H3' C5P sing 86 n n O3' HO3' C5P sing 87 n n C2' O2' C5P sing 88 n n C2' C1' C5P sing 89 n n C2' "H2'1" C5P sing 90 n n O2' HO2' C5P sing 91 n n C1' N1 C5P sing 92 n n C1' H1' C5P sing 93 n n N1 C2 C5P sing 94 n n N1 C6 C5P sing 95 n n C2 N3 C5P sing 96 n n C2 O2 C5P doub 97 n n N3 C4 C5P doub 98 n n C4 C5 C5P sing 99 n n C4 N4 C5P sing 100 n n C5 C6 C5P doub 101 n n C5 H5 C5P sing 102 n n C6 H6 C5P sing 103 n n N4 HN41 C5P sing 104 n n N4 HN42 C5P sing 105 n n # _atom_sites.entry_id 4ZCP _atom_sites.fract_transf_matrix[1][1] 0.019794 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01443 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008588 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 C5P A 1 801 1 C5P C5P . C 3 HOH A 1 901 43 HOH HOH . C 3 HOH A 2 902 8 HOH HOH . C 3 HOH A 3 903 38 HOH HOH . C 3 HOH A 4 904 22 HOH HOH . C 3 HOH A 5 905 39 HOH HOH . C 3 HOH A 6 906 1 HOH HOH . C 3 HOH A 7 907 30 HOH HOH . C 3 HOH A 8 908 33 HOH HOH . C 3 HOH A 9 909 4 HOH HOH . C 3 HOH A 10 910 35 HOH HOH . C 3 HOH A 11 911 9 HOH HOH . C 3 HOH A 12 912 14 HOH HOH . C 3 HOH A 13 913 10 HOH HOH . C 3 HOH A 14 914 29 HOH HOH . C 3 HOH A 15 915 15 HOH HOH . C 3 HOH A 16 916 3 HOH HOH . C 3 HOH A 17 917 32 HOH HOH . C 3 HOH A 18 918 34 HOH HOH . C 3 HOH A 19 919 11 HOH HOH . C 3 HOH A 20 920 2 HOH HOH . C 3 HOH A 21 921 7 HOH HOH . C 3 HOH A 22 922 5 HOH HOH . C 3 HOH A 23 923 42 HOH HOH . C 3 HOH A 24 924 21 HOH HOH . C 3 HOH A 25 925 12 HOH HOH . C 3 HOH A 26 926 6 HOH HOH . C 3 HOH A 27 927 17 HOH HOH . C 3 HOH A 28 928 13 HOH HOH . C 3 HOH A 29 929 16 HOH HOH . C 3 HOH A 30 930 18 HOH HOH . C 3 HOH A 31 931 36 HOH HOH . C 3 HOH A 32 932 25 HOH HOH . C 3 HOH A 33 933 41 HOH HOH . C 3 HOH A 34 934 27 HOH HOH . C 3 HOH A 35 935 28 HOH HOH . C 3 HOH A 36 936 40 HOH HOH . C 3 HOH A 37 937 37 HOH HOH . C 3 HOH A 38 938 20 HOH HOH . C 3 HOH A 39 939 19 HOH HOH . C 3 HOH A 40 940 31 HOH HOH . C 3 HOH A 41 941 23 HOH HOH . C 3 HOH A 42 942 24 HOH HOH . C 3 HOH A 43 943 26 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O3P C5P . . . B 2 5.226 149.492 15.453 1 40.69 ? O3P C5P 801 A 1 HETATM 2 P P C5P . . . B 2 6.548 150.377 15.404 1 40.21 ? P C5P 801 A 1 HETATM 3 O O1P C5P . . . B 2 7.229 150.349 14.066 1 44.61 -1 O1P C5P 801 A 1 HETATM 4 O O2P C5P . . . B 2 6.034 151.821 15.8 1 38.5 ? O2P C5P 801 A 1 HETATM 5 O O5' C5P . . . B 2 7.5 149.811 16.589 1 39.86 ? O5' C5P 801 A 1 HETATM 6 C C5' C5P . . . B 2 7.041 149.845 17.951 1 36.02 ? C5' C5P 801 A 1 HETATM 7 C C4' C5P . . . B 2 8.134 149.286 18.833 1 35.95 ? C4' C5P 801 A 1 HETATM 8 O O4' C5P . . . B 2 8.396 147.908 18.435 1 34.74 ? O4' C5P 801 A 1 HETATM 9 C C3' C5P . . . B 2 9.432 150.102 18.639 1 36.43 ? C3' C5P 801 A 1 HETATM 10 O O3' C5P . . . B 2 10.122 150.273 19.913 1 34.74 ? O3' C5P 801 A 1 HETATM 11 C C2' C5P . . . B 2 10.228 149.224 17.71 1 36.49 ? C2' C5P 801 A 1 HETATM 12 O O2' C5P . . . B 2 11.624 149.357 17.939 1 37.42 ? O2' C5P 801 A 1 HETATM 13 C C1' C5P . . . B 2 9.813 147.82 18.127 1 37.53 ? C1' C5P 801 A 1 HETATM 14 N N1 C5P . . . B 2 10.091 146.844 17.037 1 39.55 ? N1 C5P 801 A 1 HETATM 15 C C2 C5P . . . B 2 11.005 145.858 17.217 1 39.63 ? C2 C5P 801 A 1 HETATM 16 N N3 C5P . . . B 2 11.274 144.972 16.239 1 38.4 ? N3 C5P 801 A 1 HETATM 17 C C4 C5P . . . B 2 10.636 145.042 15.055 1 43.68 ? C4 C5P 801 A 1 HETATM 18 C C5 C5P . . . B 2 9.691 146.039 14.804 1 43.55 ? C5 C5P 801 A 1 HETATM 19 C C6 C5P . . . B 2 9.415 146.959 15.809 1 40.95 ? C6 C5P 801 A 1 HETATM 20 O O2 C5P . . . B 2 11.602 145.758 18.287 1 35.56 ? O2 C5P 801 A 1 HETATM 21 N N4 C5P . . . B 2 10.906 144.161 14.109 1 43.26 ? N4 C5P 801 A 1 # _model_server_stats.io_time_ms 70 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 267 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 21 #