data_4ZD5
#
_model_server_result.job_id            TxA92k6RsjaHTSvVJnP6kA 
_model_server_result.datetime_utc      '2024-11-08 03:14:03' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4zd5 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":504}' 
#
_entry.id    4ZD5 
#
_exptl.entry_id    4ZD5 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          112.91 
_cell.angle_gamma         90 
_cell.entry_id            4ZD5 
_cell.length_a            57.646 
_cell.length_b            74.898 
_cell.length_c            64.587 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4ZD5 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,H,L 1 1 
B,I,J,K,M 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 F N N 
? 3 G N N 
? 3 H N N 
? 3 K N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 50 A CYS 288 1_555 A SG CYS 79 A CYS 317 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.055 ? 
disulf ? disulf2 B SG CYS 50 B CYS 288 1_555 B SG CYS 79 B CYS 317 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.072 ? 
metalc ? metalc1 A NE2 HIS 103 A HIS 341 1_555 C ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? 
metalc ? metalc2 A NE2 HIS 105 A HIS 343 1_555 C ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.111 ? 
metalc ? metalc3 A OD2 ASP 116 A ASP 354 1_555 C ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.901 ? 
metalc ? metalc4 A NE2 HIS 118 A HIS 356 1_555 D ZN ZN . A ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? 
metalc ? metalc5 A SG CYS 159 A CYS 397 1_555 D ZN ZN . A ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.392 ? 
metalc ? metalc6 A NE2 HIS 166 A HIS 404 1_555 D ZN ZN . A ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.905 ? 
metalc ? metalc7 A NE2 HIS 168 A HIS 406 1_555 D ZN ZN . A ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.966 ? 
metalc ? metalc8 C ZN ZN . A ZN 501 1_555 L O HOH . A HOH 608 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.961 ? 
metalc ? metalc9 B NE2 HIS 103 B HIS 341 1_555 J ZN ZN . B ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.104 ? 
metalc ? metalc10 B NE2 HIS 105 B HIS 343 1_555 J ZN ZN . B ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.124 ? 
metalc ? metalc11 B OD1 ASP 116 B ASP 354 1_555 J ZN ZN . B ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.566 ? 
metalc ? metalc12 B OD2 ASP 116 B ASP 354 1_555 J ZN ZN . B ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.889 ? 
metalc ? metalc13 B NE2 HIS 118 B HIS 356 1_555 I ZN ZN . B ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.09 ? 
metalc ? metalc14 B SG CYS 159 B CYS 397 1_555 I ZN ZN . B ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.349 ? 
metalc ? metalc15 B NE2 HIS 168 B HIS 406 1_555 I ZN ZN . B ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
metalc ? metalc16 J ZN ZN . B ZN 502 1_555 M O HOH . B HOH 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.791 ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 83 n n 
C1 C2 EDO sing 84 n n 
C1 H11 EDO sing 85 n n 
C1 H12 EDO sing 86 n n 
O1 HO1 EDO sing 87 n n 
C2 O2 EDO sing 88 n n 
C2 H21 EDO sing 89 n n 
C2 H22 EDO sing 90 n n 
O2 HO2 EDO sing 91 n n 
#
_atom_sites.entry_id                     4ZD5 
_atom_sites.fract_transf_matrix[1][1]    0.017347 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.007332 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013351 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.016809 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 ZN A 1 501 1 ZN ZN . 
D 2 ZN A 1 502 2 ZN ZN . 
E 3 EDO A 1 503 1 EDO EDO . 
F 3 EDO A 1 504 3 EDO EDO . 
G 3 EDO A 1 505 4 EDO EDO . 
H 3 EDO A 1 506 5 EDO EDO . 
I 2 ZN B 1 501 3 ZN ZN . 
J 2 ZN B 1 502 4 ZN ZN . 
K 3 EDO B 1 503 2 EDO EDO . 
L 4 HOH A 1 601 47 HOH HOH . 
L 4 HOH A 2 602 21 HOH HOH . 
L 4 HOH A 3 603 72 HOH HOH . 
L 4 HOH A 4 604 9 HOH HOH . 
L 4 HOH A 5 605 52 HOH HOH . 
L 4 HOH A 6 606 70 HOH HOH . 
L 4 HOH A 7 607 53 HOH HOH . 
L 4 HOH A 8 608 56 HOH HOH . 
L 4 HOH A 9 609 14 HOH HOH . 
L 4 HOH A 10 610 73 HOH HOH . 
L 4 HOH A 11 611 18 HOH HOH . 
L 4 HOH A 12 612 57 HOH HOH . 
L 4 HOH A 13 613 36 HOH HOH . 
L 4 HOH A 14 614 85 HOH HOH . 
L 4 HOH A 15 615 6 HOH HOH . 
L 4 HOH A 16 616 16 HOH HOH . 
L 4 HOH A 17 617 75 HOH HOH . 
L 4 HOH A 18 618 7 HOH HOH . 
L 4 HOH A 19 619 22 HOH HOH . 
L 4 HOH A 20 620 38 HOH HOH . 
L 4 HOH A 21 621 5 HOH HOH . 
L 4 HOH A 22 622 93 HOH HOH . 
L 4 HOH A 23 623 4 HOH HOH . 
L 4 HOH A 24 624 29 HOH HOH . 
L 4 HOH A 25 625 13 HOH HOH . 
L 4 HOH A 26 626 2 HOH HOH . 
L 4 HOH A 27 627 78 HOH HOH . 
L 4 HOH A 28 628 77 HOH HOH . 
L 4 HOH A 29 629 33 HOH HOH . 
L 4 HOH A 30 630 8 HOH HOH . 
L 4 HOH A 31 631 25 HOH HOH . 
L 4 HOH A 32 632 3 HOH HOH . 
L 4 HOH A 33 633 17 HOH HOH . 
L 4 HOH A 34 634 1 HOH HOH . 
L 4 HOH A 35 635 69 HOH HOH . 
L 4 HOH A 36 636 89 HOH HOH . 
L 4 HOH A 37 637 15 HOH HOH . 
L 4 HOH A 38 638 91 HOH HOH . 
L 4 HOH A 39 639 42 HOH HOH . 
L 4 HOH A 40 640 19 HOH HOH . 
L 4 HOH A 41 641 46 HOH HOH . 
L 4 HOH A 42 642 32 HOH HOH . 
L 4 HOH A 43 643 84 HOH HOH . 
L 4 HOH A 44 644 39 HOH HOH . 
L 4 HOH A 45 645 86 HOH HOH . 
L 4 HOH A 46 646 48 HOH HOH . 
L 4 HOH A 47 647 20 HOH HOH . 
L 4 HOH A 48 648 60 HOH HOH . 
L 4 HOH A 49 649 59 HOH HOH . 
L 4 HOH A 50 650 71 HOH HOH . 
L 4 HOH A 51 651 12 HOH HOH . 
M 4 HOH B 1 601 79 HOH HOH . 
M 4 HOH B 2 602 24 HOH HOH . 
M 4 HOH B 3 603 55 HOH HOH . 
M 4 HOH B 4 604 50 HOH HOH . 
M 4 HOH B 5 605 88 HOH HOH . 
M 4 HOH B 6 606 40 HOH HOH . 
M 4 HOH B 7 607 80 HOH HOH . 
M 4 HOH B 8 608 65 HOH HOH . 
M 4 HOH B 9 609 35 HOH HOH . 
M 4 HOH B 10 610 74 HOH HOH . 
M 4 HOH B 11 611 37 HOH HOH . 
M 4 HOH B 12 612 34 HOH HOH . 
M 4 HOH B 13 613 61 HOH HOH . 
M 4 HOH B 14 614 51 HOH HOH . 
M 4 HOH B 15 615 26 HOH HOH . 
M 4 HOH B 16 616 62 HOH HOH . 
M 4 HOH B 17 617 49 HOH HOH . 
M 4 HOH B 18 618 81 HOH HOH . 
M 4 HOH B 19 619 66 HOH HOH . 
M 4 HOH B 20 620 82 HOH HOH . 
M 4 HOH B 21 621 63 HOH HOH . 
M 4 HOH B 22 622 92 HOH HOH . 
M 4 HOH B 23 623 30 HOH HOH . 
M 4 HOH B 24 624 67 HOH HOH . 
M 4 HOH B 25 625 90 HOH HOH . 
M 4 HOH B 26 626 27 HOH HOH . 
M 4 HOH B 27 627 44 HOH HOH . 
M 4 HOH B 28 628 11 HOH HOH . 
M 4 HOH B 29 629 28 HOH HOH . 
M 4 HOH B 30 630 64 HOH HOH . 
M 4 HOH B 31 631 41 HOH HOH . 
M 4 HOH B 32 632 43 HOH HOH . 
M 4 HOH B 33 633 23 HOH HOH . 
M 4 HOH B 34 634 54 HOH HOH . 
M 4 HOH B 35 635 76 HOH HOH . 
M 4 HOH B 36 636 31 HOH HOH . 
M 4 HOH B 37 637 10 HOH HOH . 
M 4 HOH B 38 638 68 HOH HOH . 
M 4 HOH B 39 639 87 HOH HOH . 
M 4 HOH B 40 640 83 HOH HOH . 
M 4 HOH B 41 641 45 HOH HOH . 
M 4 HOH B 42 642 58 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . F 3 12.588 -2.416 -0.019 1 44.64 ? C1 EDO 504 A 1 
HETATM 2 O O1 EDO . . . F 3 13.474 -1.417 -0.474 1 38.61 ? O1 EDO 504 A 1 
HETATM 3 C C2 EDO . . . F 3 11.783 -1.924 1.191 1 44.54 ? C2 EDO 504 A 1 
HETATM 4 O O2 EDO . . . F 3 11.194 -3.113 1.714 1 39.3 ? O2 EDO 504 A 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    18 
_model_server_stats.query_time_ms           222 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           4 
#